CmaCh08G009850.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G009850.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr08: 6154636 .. 6156423 (-)
Sequence length653
RNA-Seq ExpressionCmaCh08G009850.1
SyntenyCmaCh08G009850.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATATGCTCTTCGCTCATAACCCAATTGGTTACAGCTGTTTACACGATTTCTCTCTCTCTCTCCATCGCTATTCCTCTATTCAAACTCCTAATCAGAGTAAAAAATCGCTTAAACTCTCTCTTTTCTCTATTGGGTCTAAATATTTCGCCTCAGTTCTATCGATTATTCTCTCATTTTGTTGTTGTTTCTTCTGAAAATCGAAGGGGTTTTAGATTATATATTATCCATCGCTTTCTTTAGTAGATTTAAGGCATTGAACTGTTCGATGTTGTGAGAAAATTAAGCAAGAACAAACCCTCTTCCCCCTTAAATTTCTCCGTCTATTTCGTGACAAATAATGCGGAGTTCTGTGAGAGAAAAGGGTATTTTATATGCTTCTCTTATCGATTTGCGTGAGTGAGATACAGAAATTGGGAGTTTGGGTTTATTTTGGGGTTTGTGAAGCGGCCTCGTTTGCTGTGAAGTCTCCTCTTCTTGGTTCATATGGGGATTGGGTTTGGGGGATTGGGGCCATTATTGGATCTTTGTTTGATTATTTGGTGGAAATGGTGCTGTTCTTCTTCTTGTTCTTCACGGATTCTGGCTGTTCTGCTTTCTGTGGAGCACTGAAGAACTTGTTGTTCTTGGCTACTGATCACAAGGTTAGTGGAATTCAAGTCATTTTGGGTTTTCTTTTTGGATGAATCTTGTTTAGTCATGAATGATGATTGTGAACTTGGCTCTGCTGAGTTGTTTTTGTTTCAATGAGTCGTTTCTGTGGTTAAAAATGGATGGATTTACTTATATGTTTCCTTTGATTCTGTTCTTCCCAGCTGAAATTGGATGGATTCATCAAATTTTCTAGAGTTGTTTTAAGTTGAATGGCAGTGAATTTGTGAGTAAAGATGAATTTCAAAGATGAGACTCGGTTCATAACATGTTTTTGTTCATGTTTTTTTAGAAAGTAGTTTGATTACTTTAAAGTTTCGTGTTTGCACATCGGTTGGAGAGAAGAACAAAGCACAAAACCCAAAGAAGATAATATCGACTAGCGGTGGGCTTGTGCTGTTATAAATGGTGGGCAACGTGGTATTCTTGAAAGTTATATCAGCTAGTAGTGGGCTTGGGCTGTTACAAATGGTGGGTGACGTGGTATTCTTGAAAGTTATATCGGCTAGCTGTGGACTTGGGCTATTACAAATGGTGGGCAGTATGTTATTGTCGAAAGTTGCCCCAATGAAAAGTGTTTTAAGGTTTGGACGCAAAAGCAAGTTAAGTCTACGCTTTATAGGACCTACAATCCAAGCCCACCACTAGTAGTTATTGTTCTCTATGGGCTTTTCCTTTCGGGCTTCCTCTCAAAGCTTTTAAAACACGTTTGCTAGTGAGAGATTTCCACACCGAATGTTTCATTCTCCTACCCAACTAATGTGGGATCTCACAATCTCCTTGCTAAACAAGCGGTTTAATTCTTCAAATATGATTATTTAGGGGCTTAAGAATCTTACTTTCCTAGTTTTAAAGCGTTCGAGAATCAGTTCATCGTTGTTTCTAAACTAGTTTCATTTGTCCATCAAATGGTTTATTCGATGTCTCGTGTTCAAGTCTTCTGATAGATTTAATCAATGTTGAAGTTACCTTTGCTATGCTTAGTTGATCAGTAGATGGAAGTTTTCCCTTCTGATCTCTGTTCTGAGTTGAAATTTAATGGTAGTTCTTGTATTCTTTGAAACAAGGACTTATCAAGCAATACATAAGCTGTTTTTGTATGTGATGATCTTTTTTGTGTTGGTTCAGGATACTTGA

mRNA sequence

TCAATATGCTCTTCGCTCATAACCCAATTGGTTACAGCTGTTTACACGATTTCTCTCTCTCTCTCCATCGCTATTCCTCTATTCAAACTCCTAATCAGAGTAAAAAATCGCTTAAACTCTCTCTTTTCTCTATTGGGTCTAAATATTTCGCCTCAGTTCTATCGATTATTCTCTCATTTTGTTGTTGTTTCTTCTGAAAATCGAAGGGGTTTTAGATTATATATTATCCATCGCTTTCTTTAGTAGATTTAAGGCATTGAACTGTTCGATGTTGTGAGAAAATTAAGCAAGAACAAACCCTCTTCCCCCTTAAATTTCTCCGTCTATTTCGTGACAAATAATGCGGAGTTCTGTGAGAGAAAAGGGTATTTTATATGCTTCTCTTATCGATTTGCGTGAGTGAGATACAGAAATTGGGAGTTTGGGTTTATTTTGGGGTTTGTGAAGCGGCCTCGTTTGCTGTGAAGTCTCCTCTTCTTGGTTCATATGGGGATTGGGTTTGGGGGATTGGGGCCATTATTGGATCTTTGTTTGATTATTTGGTGGAAATGGTGCTGTTCTTCTTCTTGTTCTTCACGGATTCTGGCTGTTCTGCTTTCTGTGGAGCACTGAAGAACTTGTTGTTCTTGGCTACTGATCACAAGGATACTTGA

Coding sequence (CDS)

ATGCTTCTCTTATCGATTTGCGTGAGTGAGATACAGAAATTGGGAGTTTGGGTTTATTTTGGGGTTTGTGAAGCGGCCTCGTTTGCTGTGAAGTCTCCTCTTCTTGGTTCATATGGGGATTGGGTTTGGGGGATTGGGGCCATTATTGGATCTTTGTTTGATTATTTGGTGGAAATGGTGCTGTTCTTCTTCTTGTTCTTCACGGATTCTGGCTGTTCTGCTTTCTGTGGAGCACTGAAGAACTTGTTGTTCTTGGCTACTGATCACAAGGATACTTGA

Protein sequence

MLLLSICVSEIQKLGVWVYFGVCEAASFAVKSPLLGSYGDWVWGIGAIIGSLFDYLVEMVLFFFLFFTDSGCSAFCGALKNLLFLATDHKDT
Homology
[Close]
BLAST of CmaCh08G009850.1 vs. NCBI nr
Match: KAG6593742.1 (hypothetical protein SDJN03_13218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 24 EAASFAVKSPLLGSYGDWVWGIGAIIGSLFDYLVEMVLFFFLFFTDSGCSAFCGALKNLL 83
          +AASFAVKSPL+GS+GDWVWGIGAIIGS+FDYLVEMVL FFLFFTDSGCSAFCGALKNLL
Sbjct: 8  KAASFAVKSPLVGSHGDWVWGIGAIIGSVFDYLVEMVL-FFLFFTDSGCSAFCGALKNLL 67

Query: 84 FLATDHKDT 93
          FLATDHKDT
Sbjct: 68 FLATDHKDT 75

The following BLAST results are available for this feature:
BLAST of CmaCh08G009850.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh08G009850.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh08G009850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593742.13.2e-2792.75hypothetical protein SDJN03_13218, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh08G009850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh08G009850CmaCh08G009850gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G009850.1:exon:1555CmaCh08G009850.1:exon:1555exon
CmaCh08G009850.1:exon:1554CmaCh08G009850.1:exon:1554exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G009850.1:cdsCmaCh08G009850.1:cds_2CDS
CmaCh08G009850.1:cdsCmaCh08G009850.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G009850.1:five_prime_utrCmaCh08G009850.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh08G009850.1CmaCh08G009850.1-proteinpolypeptide