CmaCh08G009850 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G009850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr08: 6154636 .. 6156423 (-)
RNA-Seq ExpressionCmaCh08G009850
SyntenyCmaCh08G009850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATATGCTCTTCGCTCATAACCCAATTGGTTACAGCTGTTTACACGATTTCTCTCTCTCTCTCCATCGCTATTCCTCTATTCAAACTCCTAATCAGAGTAAAAAATCGCTTAAACTCTCTCTTTTCTCTATTGGGTCTAAATATTTCGCCTCAGTTCTATCGATTATTCTCTCATTTTGTTGTTGTTTCTTCTGAAAATCGAAGGGGTTTTAGATTATATATTATCCATCGCTTTCTTTAGTAGATTTAAGGCATTGAACTGTTCGATGTTGTGAGAAAATTAAGCAAGAACAAACCCTCTTCCCCCTTAAATTTCTCCGTCTATTTCGTGACAAATAATGCGGAGTTCTGTGAGAGAAAAGGGTATTTTATATGCTTCTCTTATCGATTTGCGTGAGTGAGATACAGAAATTGGGAGTTTGGGTTTATTTTGGGGTTTGTGAAGCGGCCTCGTTTGCTGTGAAGTCTCCTCTTCTTGGTTCATATGGGGATTGGGTTTGGGGGATTGGGGCCATTATTGGATCTTTGTTTGATTATTTGGTGGAAATGGTGCTGTTCTTCTTCTTGTTCTTCACGGATTCTGGCTGTTCTGCTTTCTGTGGAGCACTGAAGAACTTGTTGTTCTTGGCTACTGATCACAAGGTTAGTGGAATTCAAGTCATTTTGGGTTTTCTTTTTGGATGAATCTTGTTTAGTCATGAATGATGATTGTGAACTTGGCTCTGCTGAGTTGTTTTTGTTTCAATGAGTCGTTTCTGTGGTTAAAAATGGATGGATTTACTTATATGTTTCCTTTGATTCTGTTCTTCCCAGCTGAAATTGGATGGATTCATCAAATTTTCTAGAGTTGTTTTAAGTTGAATGGCAGTGAATTTGTGAGTAAAGATGAATTTCAAAGATGAGACTCGGTTCATAACATGTTTTTGTTCATGTTTTTTTAGAAAGTAGTTTGATTACTTTAAAGTTTCGTGTTTGCACATCGGTTGGAGAGAAGAACAAAGCACAAAACCCAAAGAAGATAATATCGACTAGCGGTGGGCTTGTGCTGTTATAAATGGTGGGCAACGTGGTATTCTTGAAAGTTATATCAGCTAGTAGTGGGCTTGGGCTGTTACAAATGGTGGGTGACGTGGTATTCTTGAAAGTTATATCGGCTAGCTGTGGACTTGGGCTATTACAAATGGTGGGCAGTATGTTATTGTCGAAAGTTGCCCCAATGAAAAGTGTTTTAAGGTTTGGACGCAAAAGCAAGTTAAGTCTACGCTTTATAGGACCTACAATCCAAGCCCACCACTAGTAGTTATTGTTCTCTATGGGCTTTTCCTTTCGGGCTTCCTCTCAAAGCTTTTAAAACACGTTTGCTAGTGAGAGATTTCCACACCGAATGTTTCATTCTCCTACCCAACTAATGTGGGATCTCACAATCTCCTTGCTAAACAAGCGGTTTAATTCTTCAAATATGATTATTTAGGGGCTTAAGAATCTTACTTTCCTAGTTTTAAAGCGTTCGAGAATCAGTTCATCGTTGTTTCTAAACTAGTTTCATTTGTCCATCAAATGGTTTATTCGATGTCTCGTGTTCAAGTCTTCTGATAGATTTAATCAATGTTGAAGTTACCTTTGCTATGCTTAGTTGATCAGTAGATGGAAGTTTTCCCTTCTGATCTCTGTTCTGAGTTGAAATTTAATGGTAGTTCTTGTATTCTTTGAAACAAGGACTTATCAAGCAATACATAAGCTGTTTTTGTATGTGATGATCTTTTTTGTGTTGGTTCAGGATACTTGA

mRNA sequence

TCAATATGCTCTTCGCTCATAACCCAATTGGTTACAGCTGTTTACACGATTTCTCTCTCTCTCTCCATCGCTATTCCTCTATTCAAACTCCTAATCAGAGTAAAAAATCGCTTAAACTCTCTCTTTTCTCTATTGGGTCTAAATATTTCGCCTCAGTTCTATCGATTATTCTCTCATTTTGTTGTTGTTTCTTCTGAAAATCGAAGGGGTTTTAGATTATATATTATCCATCGCTTTCTTTAGTAGATTTAAGGCATTGAACTGTTCGATGTTGTGAGAAAATTAAGCAAGAACAAACCCTCTTCCCCCTTAAATTTCTCCGTCTATTTCGTGACAAATAATGCGGAGTTCTGTGAGAGAAAAGGGTATTTTATATGCTTCTCTTATCGATTTGCGTGAGTGAGATACAGAAATTGGGAGTTTGGGTTTATTTTGGGGTTTGTGAAGCGGCCTCGTTTGCTGTGAAGTCTCCTCTTCTTGGTTCATATGGGGATTGGGTTTGGGGGATTGGGGCCATTATTGGATCTTTGTTTGATTATTTGGTGGAAATGGTGCTGTTCTTCTTCTTGTTCTTCACGGATTCTGGCTGTTCTGCTTTCTGTGGAGCACTGAAGAACTTGTTGTTCTTGGCTACTGATCACAAGGATACTTGA

Coding sequence (CDS)

ATGCTTCTCTTATCGATTTGCGTGAGTGAGATACAGAAATTGGGAGTTTGGGTTTATTTTGGGGTTTGTGAAGCGGCCTCGTTTGCTGTGAAGTCTCCTCTTCTTGGTTCATATGGGGATTGGGTTTGGGGGATTGGGGCCATTATTGGATCTTTGTTTGATTATTTGGTGGAAATGGTGCTGTTCTTCTTCTTGTTCTTCACGGATTCTGGCTGTTCTGCTTTCTGTGGAGCACTGAAGAACTTGTTGTTCTTGGCTACTGATCACAAGGATACTTGA

Protein sequence

MLLLSICVSEIQKLGVWVYFGVCEAASFAVKSPLLGSYGDWVWGIGAIIGSLFDYLVEMVLFFFLFFTDSGCSAFCGALKNLLFLATDHKDT
Homology
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BLAST of CmaCh08G009850 vs. NCBI nr
Match: KAG6593742.1 (hypothetical protein SDJN03_13218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 24 EAASFAVKSPLLGSYGDWVWGIGAIIGSLFDYLVEMVLFFFLFFTDSGCSAFCGALKNLL 83
          +AASFAVKSPL+GS+GDWVWGIGAIIGS+FDYLVEMVL FFLFFTDSGCSAFCGALKNLL
Sbjct: 8  KAASFAVKSPLVGSHGDWVWGIGAIIGSVFDYLVEMVL-FFLFFTDSGCSAFCGALKNLL 67

Query: 84 FLATDHKDT 93
          FLATDHKDT
Sbjct: 68 FLATDHKDT 75

The following BLAST results are available for this feature:
BLAST of CmaCh08G009850 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh08G009850 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh08G009850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593742.13.2e-2792.75hypothetical protein SDJN03_13218, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh08G009850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G009850.1CmaCh08G009850.1mRNA