CmaCh00G003010 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G003010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II protein D1
Location	Cma_Chr00: 22719154 .. 22719644 (+)
RNA-Seq Expression	CmaCh00G003010
Synteny	CmaCh00G003010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAA

mRNA sequence

ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAA

Coding sequence (CDS)

ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAA

Protein sequence

MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE

Homology

[Close]

BLAST of CmaCh00G003010 vs. ExPASy Swiss-Prot
Match: Q70Y17 (Photosystem II protein D1 OS=Amborella trichopoda OX=13333 GN=psbA PE=3 SV=2)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy Swiss-Prot
Match: Q7YJY8 (Photosystem II protein D1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy Swiss-Prot
Match: A6MMA2 (Photosystem II protein D1 OS=Chloranthus spicatus OX=13006 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy Swiss-Prot
Match: A6MMS4 (Photosystem II protein D1 OS=Illicium oligandrum OX=145286 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy Swiss-Prot
Match: Q09FY1 (Photosystem II protein D1 OS=Nandina domestica OX=41776 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy TrEMBL
Match: A0A343UJQ8 (Photosystem II protein D1 OS=Asarum sieboldii OX=76098 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy TrEMBL
Match: E1AXP0 (Photosystem II protein D1 OS=Vitis betulifolia OX=345145 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy TrEMBL
Match: G0WVK2 (Photosystem II protein D1 OS=Magnolia kwangsiensis OX=86722 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy TrEMBL
Match: E1AXK0 (Photosystem II protein D1 OS=Vitis x champinii OX=884146 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. ExPASy TrEMBL
Match: A0A143FWX2 (Photosystem II protein D1 OS=Brahea brandegeei OX=674193 GN=psbA PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. NCBI nr
Match: NP_862734.1 (photosystem II protein D1 [Calycanthus floridus var. glaucus] >YP_004769694.1 photosystem II protein D1 [Magnolia kwangsiensis] >YP_006073084.1 photosystem II protein D1 [Elaeis guineensis] >YP_008578265.1 photosystem II protein D1 [Cocos nucifera] >YP_009170157.1 photosystem II protein D1 [Colpothrinax cookii] >YP_009229361.1 photosystem II protein D1 [Syagrus coronata] >YP_009247132.1 photosystem II protein D1 [Caryota mitis] >YP_009247218.1 photosystem II protein D1 [Wallichia densiflora] >YP_009247475.1 photosystem II protein D1 [Tahina spectabilis] >YP_009247555.1 photosystem II protein D1 [Serenoa repens] >YP_009247727.1 photosystem II protein D1 [Pritchardia thurstonii] >YP_009248158.1 photosystem II protein D1 [Lodoicea maldivica] >YP_009248584.1 photosystem II protein D1 [Corypha lecomtei] >YP_009248756.1 photosystem II protein D1 [Chamaerops humilis] >YP_009248842.1 photosystem II protein D1 [Brahea brandegeei] >YP_009248928.1 photosystem II protein D1 [Borassodendron machadonis] >YP_009249100.1 photosystem II protein D1 [Arenga caudata] >YP_009249351.1 photosystem II protein D1 [Washingtonia robusta] >YP_009298520.1 photosystem II protein D1 [Persea americana] >YP_009390456.1 photosystem II protein D1 [Cinnamomum verum] >YP_009423891.1 photosystem II protein D1 [Cinnamomum micranthum] >YP_009428352.1 photosystem II protein D1 [Cinnamomum camphora] >YP_009466687.1 photosystem II protein D1 [Acrocomia aculeata] >YP_009478728.1 photosystem II protein D1 [Alseodaphne gracilis] >YP_009478809.1 photosystem II protein D1 [Alseodaphne huanglianshanensis] >YP_009479408.1 photosystem II protein D1 [Calycanthus chinensis] >YP_009651832.1 photosystem II protein D1 [Chimonanthus praecox] >YP_009651915.1 photosystem II protein D1 [Chimonanthus nitens] >YP_009700261.1 photosystem II protein D1 [Cinnamomum yabunikkei] >YP_009706809.1 photosystem II protein D1 [Brahea aculeata] >YP_009706895.1 photosystem II protein D1 [Brahea armata] >YP_009706981.1 photosystem II protein D1 [Brahea edulis] >YP_009707067.1 photosystem II protein D1 [Brahea sarukhanii] >YP_009728714.1 photosystem II protein D1 [Arenga pinnata] >YP_009731115.1 photosystem II protein D1 [Archontophoenix alexandrae] >YP_009731286.1 photosystem II protein D1 [Cinnamomum aromaticum] >YP_009827251.1 photosystem II protein D1 [Dracaena draco] >YP_009861593.1 photosystem II protein D1 [Cinnamomum pittosporoides] >YP_010010598.1 photosystem II protein D1 [Trachycarpus fortunei] >YP_010042141.1 photosystem II protein D1 [Caryota obtusa] >YP_010146841.1 photosystem II protein D1 [Cinnamomum tenuipile] >YP_010154309.1 photosystem II protein D1 [Dryobalanops aromatica] >YP_010155662.1 photosystem II protein D1 [Cinnamomum glanduliferum] >YP_010160294.1 photosystem II protein D1 [Magnolia duperreana] >Q7YJY8.1 RecName: Full=Photosystem II protein D1; Short=PSII D1 protein; AltName: Full=Photosystem II Q(B) protein; Flags: Precursor [Calycanthus floridus var. glaucus] >AFA27363.1 photosystem II protein D1, partial [Ravenea hildebrandtii] >AKF00483.1 photosystem II protein D1 [Roystonea regia] >AKF00757.1 photosystem II protein D1 [Sclerosperma profizianum] >AKF01132.1 photosystem II protein D1 [Beccariophoenix madagascariensis] >AKF01214.1 photosystem II protein D1 [Burretiokentia grandiflora] >AKF01278.1 photosystem II protein D1 [Dictyosperma album] >AKF01428.1 photosystem II protein D1 [Dypsis decaryi] >AKF01749.1 photosystem II protein D1 [Iriartea deltoidea] >AKF01834.1 photosystem II protein D1 [Kentiopsis piersoniorum] >AKF01898.1 photosystem II protein D1 [Leopoldinia pulchra] >AKF01973.1 photosystem II protein D1 [Manicaria saccifera] >AKF02059.1 photosystem II protein D1 [Oenocarpus bataua] >AKF02121.1 photosystem II protein D1 [Oenocarpus minor] >AKQ51139.1 photosystem II protein D1 [Borassus flabellifer] >AKU70954.1 photosystem II protein D1 [Cinnamomum micranthum f. kanehirae] >ATL22191.1 photosystem II protein D1 [Nectandra angustifolia] >ATL22832.1 photosystem II protein D1 [Cryptocarya hainanensis] >ATL22898.1 photosystem II protein D1 [Eusideroxylon zwageri] >AXF46989.1 photosystem II protein D1 [Lindera benzoin] >AXR93632.1 photosystem II protein D1 [Cinnamomum bodinieri] >AZQ08831.1 photosystem II protein D1 [Cinnamomum parthenoxylon] >QEP49984.1 photosystem II protein D1 [Brahea dulcis] >QEP50156.1 photosystem II protein D1 [Brahea decumbens] >QEP50411.1 photosystem II protein D1 [Brahea moorei] >QEP50494.1 photosystem II protein D1 [Brahea calcarea] >QEP50579.1 photosystem II protein D1 [Brahea pimo] >QEP50658.1 photosystem II protein D1 [Brahea salvadorensis] >QRZ59177.1 photosystem II protein D1 [Trachycarpus nanus] >QRZ59263.1 photosystem II protein D1 [Caryota urens] >QRZ59888.1 photosystem II protein D1 [Euterpe edulis] >QRZ59974.1 photosystem II protein D1 [Euterpe oleracea] >QUI75981.1 photosystem II protein D1 [Cinnamomum osmophloeum] >QVX27373.1 photosystem II protein D1 [Cinnamomum chago] >QWK41334.1 photosystem II protein D1 [Cinnamomum septentrionale] >QWL19429.1 photosystem II protein D1 [Cinnamomum tamala] >QWL19916.1 photosystem II protein D1 [Cryptocarya yunnanensis] >QWL19999.1 photosystem II protein D1 [Cryptocarya brachythyrsa] >QWL20973.1 photosystem II protein D1 [Cinnamomum burmannii] >QWL21527.1 photosystem II protein D1 [Cryptocarya depauperata] >QWL22539.1 photosystem II protein D1 [Cinnamomum caudiferum] >QWL23011.1 photosystem II protein D1 [Cinnamomum insularimontanum] >QWW89781.1 photosystem II protein D1 [Arenga micrantha] >QZM06667.1 photosystem II protein D1 [Chimonanthus nitens var. salicifolius])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. NCBI nr
Match: YP_009163460.1 (photosystem II protein D1 [Eugenia uniflora] >YP_009338817.1 photosystem II protein D1 [Psidium guajava] >YP_009365308.1 photosystem II protein D1 [Pimenta dioica] >YP_009370877.1 photosystem II protein D1 [Plinia trunciflora] >YP_009486524.1 photosystem II protein D1 [Griffonia simplicifolia] >YP_009515329.1 photosystem II protein D1 [Plinia cauliflora] >YP_009520388.1 photosystem II protein D1 [Plinia aureana] >YP_009640153.1 photosystem II protein D1 [Menispermum dauricum] >YP_009755384.1 photosystem II protein D1 [Sinomenium acutum] >YP_009825155.1 photosystem II protein D1 [Menispermum canadense] >YP_009894519.1 PSII 32 KDa protein [Crateva tapia] >YP_009920512.1 photosystem II protein D1 [Crateva unilocularis] >YP_009975066.1 photosystem II protein D1 [Drypetes chevalieri] >YP_009975141.1 photosystem II protein D1 [Drypetes diopa] >YP_009975517.1 photosystem II protein D1 [Sibangea similis] >YP_740630.1 photosystem II protein D1 [Nandina domestica] >Q09FY1.1 RecName: Full=Photosystem II protein D1; Short=PSII D1 protein; AltName: Full=Photosystem II Q(B) protein; Flags: Precursor [Nandina domestica] >AFU95410.1 PsbA, partial [Microdesmis caseariifolia] >API83216.1 photosystem II protein D1 [Acca sellowiana] >ARX63739.1 photosystem II protein D1 [Plinia sp. DVPR3003] >AXP24445.1 photosystem II protein D1 [Psidium galapageium] >AXP24527.1 photosystem II protein D1 [Psidium sp. BR-2018] >QJE70851.1 photosystem II protein D1 [Eugenia brasiliensis] >QJE70934.1 photosystem II protein D1 [Plinia edulis] >QJE71018.1 photosystem II protein D1 [Myrcianthes pungens] >QJE71102.1 photosystem II protein D1 [Eugenia pyriformis] >QJE71186.1 photosystem II protein D1 [Eugenia selloi] >QJE71355.1 photosystem II protein D1 [Psidium cattleyanum])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. NCBI nr
Match: YP_009938868.1 (photosystem II protein D1 [Stephania tetrandra] >QNV47101.1 photosystem II protein D1 [Stephania tetrandra])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. NCBI nr
Match: AFU95398.1 (PsbA, partial [Galearia maingayi])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. NCBI nr
Match: YP_009234789.1 (photosystem II protein D1 [Stephania japonica] >YP_009829131.1 photosystem II protein D1 [Stephania kwangsiensis] >YP_010047450.1 photosystem II protein D1 [Stephania dielsiana] >AMD08507.1 photosystem II protein D1 [Stephania japonica] >QJC59649.1 photosystem II protein D1 [Stephania kwangsiensis] >QPK41988.1 photosystem II protein D1 [Stephania dielsiana])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN+GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 309.3 bits (791), Expect = 1.8e-84
Identity = 157/165 (95.15%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFGQE 60
           MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN GYRFGQE
Sbjct: 183 MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQE 242

Query: 61  EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV-------GISTMAFNLNGFNF 120
           EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVV       GISTMAFNLNGFNF
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

Query: 121 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 159
           NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE
Sbjct: 303 NQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVE 347

[Close]

BLAST of CmaCh00G003010 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 1   MIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANSGYRFG-- 60
           ++ FQ  HN  ++PFHM+GVAGV G +L  A+HG+ V ++L     + + AN+   F   
Sbjct: 183 ILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPT 242

Query: 61  QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGISTMAFNLNGFNFNQSVV 120
           Q EETY++V A+ ++ ++     +F+N R LHFF+   PV G+   A  + G   N    
Sbjct: 243 QAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAY 302

Query: 121 DSQGRVINTWAD 131
           D   + I    D
Sbjct: 303 DFVSQEIRAAED 309

The following BLAST results are available for this feature:

BLAST of CmaCh00G003010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70Y17	1.9e-83	95.15	Photosystem II protein D1 OS=Amborella trichopoda OX=13333 GN=psbA PE=3 SV=2	[more]
Q7YJY8	1.9e-83	95.15	Photosystem II protein D1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psbA...	[more]
A6MMA2	1.9e-83	95.15	Photosystem II protein D1 OS=Chloranthus spicatus OX=13006 GN=psbA PE=3 SV=1	[more]
A6MMS4	1.9e-83	95.15	Photosystem II protein D1 OS=Illicium oligandrum OX=145286 GN=psbA PE=3 SV=1	[more]
Q09FY1	1.9e-83	95.15	Photosystem II protein D1 OS=Nandina domestica OX=41776 GN=psbA PE=3 SV=1	[more]

BLAST of CmaCh00G003010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343UJQ8	7.1e-81	95.15	Photosystem II protein D1 OS=Asarum sieboldii OX=76098 GN=psbA PE=3 SV=1	[more]
E1AXP0	7.1e-81	95.15	Photosystem II protein D1 OS=Vitis betulifolia OX=345145 GN=psbA PE=3 SV=1	[more]
G0WVK2	7.1e-81	95.15	Photosystem II protein D1 OS=Magnolia kwangsiensis OX=86722 GN=psbA PE=3 SV=1	[more]
E1AXK0	7.1e-81	95.15	Photosystem II protein D1 OS=Vitis x champinii OX=884146 GN=psbA PE=3 SV=1	[more]
A0A143FWX2	7.1e-81	95.15	Photosystem II protein D1 OS=Brahea brandegeei OX=674193 GN=psbA PE=3 SV=1	[more]

BLAST of CmaCh00G003010 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_862734.1	1.5e-80	95.15	photosystem II protein D1 [Calycanthus floridus var. glaucus] >YP_004769694.1 ph...	[more]
YP_009163460.1	1.5e-80	95.15	photosystem II protein D1 [Eugenia uniflora] >YP_009338817.1 photosystem II prot...	[more]
YP_009938868.1	1.5e-80	95.15	photosystem II protein D1 [Stephania tetrandra] >QNV47101.1 photosystem II prote...	[more]
AFU95398.1	1.5e-80	95.15	PsbA, partial [Galearia maingayi]	[more]
YP_009234789.1	1.5e-80	95.15	photosystem II protein D1 [Stephania japonica] >YP_009829131.1 photosystem II pr...	[more]

BLAST of CmaCh00G003010 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	1.8e-84	95.15	photosystem II reaction center protein A	[more]
ATCG00270.1	1.3e-13	34.85	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 1..131 e-value: 2.2E-17 score: 65.2
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..154
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..138 e-value: 1.9E-33 score: 115.8
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..139
IPR000484	Photosynthetic reaction centre, L/M	PROSITE	PS00244	REACTION_CENTER	coord: 9..35
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003010.1	CmaCh00G003010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity