CmaCh00G002470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cyclopropane-fatty-acyl-phospholipid synthase
Location	Cma_Chr00: 18245664 .. 18246486 (-)
RNA-Seq Expression	CmaCh00G002470
Synteny	CmaCh00G002470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGCATCAAGGCTTTGGTAAATAGTTAATTTATGTTCTTCATTTTCAACAATAATTATTAACAAATAATGAAAAAAGTCCTTTGGATACAGTGTGGAGCACTTGGAAAATATTGGAATTCATTACTATCAAACATTGAGGTGTTGGAGAAAGAATTTCTTGAACAATCAAAGGTAAGAAACCATTATTATAATAAATGATTTTGAACAATCAAATGTAAGAAACCATTATCATAGTAAATGATTTCGAATCGAAATCTAATTTATATTTTGTTTCAGCAAAATACTTCAACTCGGGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTATTGCGCTGCTCGGTTTAAATCACGAACCCTTGAAGATTATCAGGTAATCATATTTTTACATAAGATATCAAATTAATGTTAAGAATTGTAACAACCCTAGTTTTCTAGGGATCTAAAGTCGCTACAGTATGTACGACGTAGCTTTTCATGCATAAATATTTGCCAACATTTTCATAAAACAATTTCATAAACTTAGAAATATTAGATAAAAGAAAATAGATATTAAAAGTGACAATGCTCTATTGTAACCAAATGTCTAAGAATTTAAATACAATTGTCATATGCATGTGTCATAATCTTTACTTGCGATATCGTTGTCAGCTGTACATGGACCGGTAATTATATATATCAGACTAAATATGCAATTGAAGTCATAATCTAAAACTTTATTGCAGATTGTGTTTTCAAGGGCGGGTAATGTGGCAACTTTCAACAATTCATATGAAGAAATAGCTTCAGCATTCAAACTCCTTTGA

mRNA sequence

ATGGCTTCTGCATCAAGGCTTTGCAAAATACTTCAACTCGGGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTATTGCGCTGCTCGGTTTAAATCACGAACCCTTGAAGATTATCAGATTGTGTTTTCAAGGGCGGGTAATGTGGCAACTTTCAACAATTCATATGAAGAAATAGCTTCAGCATTCAAACTCCTTTGA

Coding sequence (CDS)

ATGGCTTCTGCATCAAGGCTTTGCAAAATACTTCAACTCGGGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTATTGCGCTGCTCGGTTTAAATCACGAACCCTTGAAGATTATCAGATTGTGTTTTCAAGGGCGGGTAATGTGGCAACTTTCAACAATTCATATGAAGAAATAGCTTCAGCATTCAAACTCCTTTGA

Protein sequence

MASASRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL

Homology

[Close]

BLAST of CmaCh00G002470 vs. ExPASy TrEMBL
Match: A0A6J1IB85 (LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 OS=Cucurbita maxima OX=3661 GN=LOC111473548 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 69/96 (71.88%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGFDQGFIRTWEYYFDYCAAR
Sbjct: 277 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEYYFDYCAAR 336

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL
Sbjct: 337 FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 372

[Close]

BLAST of CmaCh00G002470 vs. ExPASy TrEMBL
Match: A0A6J1IFX4 (uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 67/96 (69.79%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGFDQGFIRTWEYYFDYCAA 
Sbjct: 332 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEYYFDYCAAG 391

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 392 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 427

[Close]

BLAST of CmaCh00G002470 vs. ExPASy TrEMBL
Match: A0A6J1ICH0 (uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 67/96 (69.79%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGFDQGFIRTWEYYFDYCAA 
Sbjct: 353 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEYYFDYCAAG 412

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 413 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 448

[Close]

BLAST of CmaCh00G002470 vs. ExPASy TrEMBL
Match: A0A6J1IB60 (uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 66/96 (68.75%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGF+QGFIRTWEYYFDYCAA 
Sbjct: 353 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFNQGFIRTWEYYFDYCAAG 412

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 413 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 448

[Close]

BLAST of CmaCh00G002470 vs. ExPASy TrEMBL
Match: A0A6J1IA38 (uncharacterized protein LOC111473008 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 66/96 (68.75%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGF+QGFIRTWEYYFDYCAA 
Sbjct: 332 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFNQGFIRTWEYYFDYCAAG 391

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 392 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 427

[Close]

BLAST of CmaCh00G002470 vs. NCBI nr
Match: XP_022974792.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 69/96 (71.88%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGFDQGFIRTWEYYFDYCAAR
Sbjct: 277 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEYYFDYCAAR 336

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL
Sbjct: 337 FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 372

[Close]

BLAST of CmaCh00G002470 vs. NCBI nr
Match: XP_022973880.1 (uncharacterized protein LOC111472470 isoform X2 [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 6.5e-25
Identity = 67/96 (69.79%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGFDQGFIRTWEYYFDYCAA 
Sbjct: 353 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEYYFDYCAAG 412

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 413 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 448

[Close]

BLAST of CmaCh00G002470 vs. NCBI nr
Match: XP_022973879.1 (uncharacterized protein LOC111472470 isoform X1 [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 6.5e-25
Identity = 67/96 (69.79%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGFDQGFIRTWEYYFDYCAA 
Sbjct: 332 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFDQGFIRTWEYYFDYCAAG 391

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 392 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 427

[Close]

BLAST of CmaCh00G002470 vs. NCBI nr
Match: XP_022974371.1 (uncharacterized protein LOC111473008 isoform X1 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 66/96 (68.75%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGF+QGFIRTWEYYFDYCAA 
Sbjct: 353 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFNQGFIRTWEYYFDYCAAG 412

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 413 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 448

[Close]

BLAST of CmaCh00G002470 vs. NCBI nr
Match: XP_022974372.1 (uncharacterized protein LOC111473008 isoform X2 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 66/96 (68.75%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1   MASASRLC---------------------------KILQLGFDQGFIRTWEYYFDYCAAR 60
           MASASRLC                           KILQLGF+QGFIRTWEYYFDYCAA 
Sbjct: 332 MASASRLCVEHLENIGIHYYQTLRCWRKNFLNNQSKILQLGFNQGFIRTWEYYFDYCAAG 391

Query: 61  FKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL 70
           FKSRTLEDYQIVFSRAGNVATFNN YEEIASAFKLL
Sbjct: 392 FKSRTLEDYQIVFSRAGNVATFNNPYEEIASAFKLL 427

[Close]

BLAST of CmaCh00G002470 vs. TAIR 10
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-18
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAF 67
           +I+ LGFD  F+RTWEYYFDYCAA FK+RTL DYQ+VFSR GNVA F +SY    SA+
Sbjct: 807 QIMALGFDDKFVRTWEYYFDYCAAGFKTRTLGDYQLVFSRPGNVAAFADSYRGFPSAY 864

[Close]

BLAST of CmaCh00G002470 vs. TAIR 10
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 83.2 bits (204), Expect = 9.1e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 5   SRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIAS 64
           +R  +I+ LGFD  F+RTWEYYFDYCAA FK+ TL +YQ+VFSR GNVA F +SY    S
Sbjct: 803 ARQKQIMALGFDDKFVRTWEYYFDYCAAGFKTLTLGNYQLVFSRPGNVAAFADSYRGFPS 862

Query: 65  AF 67
           A+
Sbjct: 863 AY 864

[Close]

BLAST of CmaCh00G002470 vs. TAIR 10
Match: AT3G23480.2 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNN 58
           +I+ LGFD+ F+RTWEYYFDYCAA FK+ TL +YQIVFSR GNVA F N
Sbjct: 376 QIIDLGFDEKFLRTWEYYFDYCAAGFKTLTLRNYQIVFSRPGNVAAFGN 424

[Close]

BLAST of CmaCh00G002470 vs. TAIR 10
Match: AT3G23470.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-15
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNN 58
           +I+ LGFD  FIRTWEYYFDYCAA FK+ TL  YQIVFSR GNVA F +
Sbjct: 399 QIIDLGFDDKFIRTWEYYFDYCAAGFKTLTLRSYQIVFSRPGNVAAFGD 447

[Close]

BLAST of CmaCh00G002470 vs. TAIR 10
Match: AT3G23460.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 6.1e-13
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNV 53
           +I  LGFD  F+RT EYYFDYCAA FK+RT+ DYQIVFSR GNV
Sbjct: 236 QITDLGFDDRFVRTCEYYFDYCAAGFKTRTVGDYQIVFSRPGNV 279

The following BLAST results are available for this feature:

BLAST of CmaCh00G002470 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G002470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IB85	1.3e-26	71.88	LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 OS=Cucurbita maxima OX...	[more]
A0A6J1IFX4	3.1e-25	69.79	uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ICH0	3.1e-25	69.79	uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IB60	1.2e-24	68.75	uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IA38	1.2e-24	68.75	uncharacterized protein LOC111473008 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh00G002470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974792.1	2.6e-26	71.88	LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 [Cucurbita maxima]	[more]
XP_022973880.1	6.5e-25	69.79	uncharacterized protein LOC111472470 isoform X2 [Cucurbita maxima]	[more]
XP_022973879.1	6.5e-25	69.79	uncharacterized protein LOC111472470 isoform X1 [Cucurbita maxima]	[more]
XP_022974371.1	2.5e-24	68.75	uncharacterized protein LOC111473008 isoform X1 [Cucurbita maxima]	[more]
XP_022974372.1	2.5e-24	68.75	uncharacterized protein LOC111473008 isoform X2 [Cucurbita maxima]	[more]

BLAST of CmaCh00G002470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23510.1	4.8e-18	67.24	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23530.1	9.1e-17	61.29	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23480.2	5.9e-16	71.43	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23470.1	2.9e-15	71.43	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23460.1	6.1e-13	72.73	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 2..53 e-value: 1.6E-7 score: 32.9
None	No IPR available	PANTHER	PTHR43675:SF19	BNACNNG54600D PROTEIN	coord: 1..66
IPR026669	Arsenite methyltransferase-like	PANTHER	PTHR43675	ARSENITE METHYLTRANSFERASE	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002470.1	CmaCh00G002470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008610	lipid biosynthetic process
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016491	oxidoreductase activity