CmoCh18G003730.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAATGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGGTCATTTGAGGGATCACACCTAATAGATTAACATGGAGCCTTCATGTCAGGACTCATAACAGAGTAATTCATGGTCTTTGCACTATCAACGATTCGCATCGAGCATTTCAGCTGTATCTTAGTGTCCAGACCGTGGTATTAATGTCACTGTTTATACTTCTTATTCTTTATTCAAATGCTTCTGTAACAAAAGAGATCTTTATAAAACTTCTAGATTTCTGGATAGTACCATGGCTGATTGCTTTTTACTGCTTGAAAATATCATTAGCCATCTCAACAACATTATCAGTCTTCTTGATGGTAGTTTCTGTATAATCATGGTGTCTATGGGAAGCGAAACAGAACATTGGCATACCAATTGGGATGATTTGCCTTGCTCCATTTATATCCTTACACCCAGACATTTTTGTAGGTAGCTTTTGGAGTAAAGCCATGCGAATTGCCACTTGCATGGTACGTATTATTAGCCTTGTTTTGAACTATTCTCGTTGCCTATACATCTTTCTCATGCACGTCTTGAGTTGTTTGTAACTTTGTAGTAGTAGTAGAAACATTACGTGACAGATAATGCAAGAGCTTATCATTTGATTTCTATTTACTTTTTTCATGGTTTTGAAGGGCTTTGTTCATGTAATGGAACTTTTATGCTTTCATATTCTCTTTTAGCGTAGATGGGCTGACTTTGCATGCATACATAAATGCTCATTAGAATGATTGATGTGCTATACTTTCTAGAAGTGGCTAACATTAGAATGATTGATGCTACTCTAGATTTGGTCTTTAATCAGTTGGCTTTGCACAAAACAAAGACAACCTATTCATATAGAAATCTATTGCTAGCCCTTCATAGATGAGTTTTGTGAACTCTGAATATGAATCCCATCCATGAAATCGTCCCACTCGAGTTTTTTGGTTCTACAATTGTGTTTCTGAGTTCTGATTAGCATCTTCCAAAAGAAGTAATAGTTCAGTTTTTTATAGAATAAGCTTTCATTATGTCACCACCACTACTATCTACAAATGGTCTCATGATTAAATTTCTGTGTGATCTATGAACTCCTCTGCATTCTGATCCATACCAAATGAGATATAGTGCTCAAGGAGAAAGAAGTTAAAGCCATACTGGATAATTGTGAGCTTTTTGAGCTAGATATGTGCCTTTTCACCAACTCTATTAGCAATAGGACCATATTTTGAATATTTTAGCCTATGCTTATTATGATTTGAACCTATAACGTGTACCAGGATCATAAAACTATTAAGATGATTAATCTGCTCTCTTTTTAGTGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGAATAATTAATGACAAGCACATTAAGGAACTTGGTCCCAATGGTTAGGTAGCTCTAATTTATCCATTCTAGGGAGGAAGAAGTTATGGGCCATCTATCTGTTTGTCAAATTATTACCCAATGGAATAATTGATATCTAAAACATGAGGCGTGGATTTAATTGGCCATTCTTATAACATGCTTTAAACCTTACCAAGTTGACCACCACAAGCTAGCCATTAGTGTTTGGTGGTTGCAACAGGGACTCAATGGTAGTGGGAGTTGGAGGCCCTCATTATGCAGTCATGTGCCTCTCCCTTACCAGGAACTCCCAACCAGGAACTCCCAAGATTTTTTTTAACGGCTCAAGCCTATCGCTAGCAAATATTGTCATCTTAGGACTTTCTCTTTCGGGCTTCCCTTTAAGGTTTTGAAAATTCGTTTACTAGAGAGAGGTTTTCATACTCTTATAAAGGGTGTTCCGTTCTCCTCAACCGATGTGGGATCTCACAATCCACCCTCTTTCAGGGTCTAGCGTCCTCGCTGGCACTCGTTTCTCTATCCAATCGCTATGGGATCTCCAACATTTTCGCTGGCATTCGTTCCTTCTCCAATCTCTATGGGATCTCACAATCCTTTTAAAATGGTGTTTCGTTCTCCTCCTCAACCAATATGGGATTTCACAATTCACCCTCCTTCAGGGCACAACGTCTTCGCTGGCACTCCTTCCTCTCTGCAATTGCTATAGAATCTCACAATCTTTATCTTTTTTGTTCTGTTTTTTTTTTCCTCCCCTTTTTTTGATGAAGATTTTGACAATATTACCACTTGCAATTATTAACTGTGTTGGTTGGTTTGTGGCTTTCCTGTTTTGAGTGATTATGTACAAAGCTTTCAACTCACAACATCCTTATAGATATCTGGTGTGAGAAATGTGATGATGAGTTGTCTCAATTGCATCTGGAATGTGACCATCCTTTTTTTGGCACACACAAAAGCATGTTGAAATATTCATCTGGACATTCTTCCTTTTTTCTCCCTTTCTCTCTCTTTGAATGCTAATAATTGATAGCCTCCAAACTTTATTTTGATGTCAGGTTGCCCTTTCTGATTTAGGCTTCATTAGCAATGAGTTTGTTTGTTGCATTTACCACTTTTCCCTCAATTTAAGGACTAGTTGGCAAGCTCAAAAGTGGTCATCATCACCTACTCTTTATATGCTTTCATTTTATACAATCATAGGTTAGATTCCACATCCGTCGACACTGGTACTGAAAGAGAGTGAATTGTAAGATCCCACATCGATTGGAGAGGGGAACGAAACATTCTTTATAATGGTGTGAAAATCTCTACCTAACAGACGCGTTTTAAAAACTTTGAGACAAACTCCAAAAGAGAAAGCACAAAGAGAACAATATCTGCCAACGATGAAAAGACAGAATACTACTTGTTTCTCGTGCTTCTCGTGCTGTCGTAGTAGAGCCATCCATCAGTTAGTCACTTACCCTTACCCATCAAGGTTTTTGGATTCTTTTAAGGCTCAAAATCTTTCGTTTTCTTCTTTGTTCAAAATTACTTTTTTTTTTTTTTTTTTTTTACCCAATTTTTGAATTGCCCTTTGATTTTGACACTTCATTAGTATCAATAAAACATATGGTTAAGCCTAACCAAATCTCATATTTTGTCACTTCTTTAGTACTTTTCATAATTTATTTGTCCATTTATATGATTTTAATCTAACTTATCTAACTTATTCAAATTTTATATTTTTAAATGTTTTAATTTAGCTTATTTCAATAA ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAATGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGTGTCCAGACCGTGGTATTAATGTCACTGTTTATACTTCTTATTCTTTATTCAAATGCTTCTGTAACAAAAGAGATCTTTATAAAACTTCTAGATTTCTGGATAGTACCATGGCTGATTGCTTTTTACTGCTTGAAAATATCATTAGCCATCTCAACAACATTATCAGTCTTCTTGATGGTAGTTTCTGTATAATCATGGTGTCTATGGGAAGCGAAACAGAACATTGGCATACCAATTGGGATGATTTGCCTTGCTCCATTTATATCCTTACACCCAGACATTTTTGTAGCTTATTTCAATAA ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAATGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGTGTCCAGACCGTGGTATTAATGTCACTGTTTATACTTCTTATTCTTTATTCAAATGCTTCTGTAACAAAAGAGATCTTTATAAAACTTCTAGATTTCTGGATAGTACCATGGCTGATTGCTTTTTACTGCTTGAAAATATCATTAGCCATCTCAACAACATTATCAGTCTTCTTGATGGTAGTTTCTGTATAATCATGGTGTCTATGGGAAGCGAAACAGAACATTGGCATACCAATTGGGATGATTTGCCTTGCTCCATTTATATCCTTACACCCAGACATTTTTGTAGCTTATTTCAATAA MDTKGCSPSVVTYTSMIHGLCAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLDSTMADCFLLLENIISHLNNIISLLDGSFCIIMVSMGSETEHWHTNWDDLPCSIYILTPRHFCSLFQ Homology
BLAST of CmoCh18G003730.1 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 8.3e-16 Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy Swiss-Prot
Match: Q9C8T7 (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX=3702 GN=At1g63330 PE=2 SV=2) HSP 1 Score: 69.7 bits (169), Expect = 3.6e-11 Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 8.0e-11 Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy Swiss-Prot
Match: P0C7Q7 (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10 Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy TrEMBL
Match: A0A6J1CDW1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010648 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22 Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy TrEMBL
Match: A0A6J1CF14 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010648 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22 Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy TrEMBL
Match: A0A5D3DS89 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G001080 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22 Identity = 85/237 (35.86%), Postives = 97/237 (40.93%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy TrEMBL
Match: A0A6J1KLZ3 (pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita maxima OX=3661 GN=LOC111495767 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22 Identity = 86/237 (36.29%), Postives = 96/237 (40.51%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. ExPASy TrEMBL
Match: A0A1S3B6P2 (pentatricopeptide repeat-containing protein At5g46100 OS=Cucumis melo OX=3656 GN=LOC103486611 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22 Identity = 85/237 (35.86%), Postives = 97/237 (40.93%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. NCBI nr
Match: KAG7012455.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 119.0 bits (297), Expect = 3.9e-23 Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. NCBI nr
Match: XP_038893902.1 (pentatricopeptide repeat-containing protein At5g46100 [Benincasa hispida]) HSP 1 Score: 118.2 bits (295), Expect = 6.7e-23 Identity = 86/237 (36.29%), Postives = 97/237 (40.93%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. NCBI nr
Match: KAA0057015.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26443.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 115.2 bits (287), Expect = 5.7e-22 Identity = 85/237 (35.86%), Postives = 97/237 (40.93%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. NCBI nr
Match: XP_022139832.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia] >XP_022139834.1 pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia]) HSP 1 Score: 115.2 bits (287), Expect = 5.7e-22 Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. NCBI nr
Match: XP_022139830.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia] >XP_022139831.1 pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia]) HSP 1 Score: 115.2 bits (287), Expect = 5.7e-22 Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 85.1 bits (209), Expect = 5.9e-17 Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. TAIR 10
Match: AT1G63330.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12 Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12 Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12 Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0
BLAST of CmoCh18G003730.1 vs. TAIR 10
Match: AT1G12700.1 (ATP binding;nucleic acid binding;helicases ) HSP 1 Score: 68.2 bits (165), Expect = 7.4e-12 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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