CmoCh18G003730 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G003730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr18: 2419786 .. 2423369 (+)
RNA-Seq ExpressionCmoCh18G003730
SyntenyCmoCh18G003730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAATGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGGTCATTTGAGGGATCACACCTAATAGATTAACATGGAGCCTTCATGTCAGGACTCATAACAGAGTAATTCATGGTCTTTGCACTATCAACGATTCGCATCGAGCATTTCAGCTGTATCTTAGTGTCCAGACCGTGGTATTAATGTCACTGTTTATACTTCTTATTCTTTATTCAAATGCTTCTGTAACAAAAGAGATCTTTATAAAACTTCTAGATTTCTGGATAGTACCATGGCTGATTGCTTTTTACTGCTTGAAAATATCATTAGCCATCTCAACAACATTATCAGTCTTCTTGATGGTAGTTTCTGTATAATCATGGTGTCTATGGGAAGCGAAACAGAACATTGGCATACCAATTGGGATGATTTGCCTTGCTCCATTTATATCCTTACACCCAGACATTTTTGTAGGTAGCTTTTGGAGTAAAGCCATGCGAATTGCCACTTGCATGGTACGTATTATTAGCCTTGTTTTGAACTATTCTCGTTGCCTATACATCTTTCTCATGCACGTCTTGAGTTGTTTGTAACTTTGTAGTAGTAGTAGAAACATTACGTGACAGATAATGCAAGAGCTTATCATTTGATTTCTATTTACTTTTTTCATGGTTTTGAAGGGCTTTGTTCATGTAATGGAACTTTTATGCTTTCATATTCTCTTTTAGCGTAGATGGGCTGACTTTGCATGCATACATAAATGCTCATTAGAATGATTGATGTGCTATACTTTCTAGAAGTGGCTAACATTAGAATGATTGATGCTACTCTAGATTTGGTCTTTAATCAGTTGGCTTTGCACAAAACAAAGACAACCTATTCATATAGAAATCTATTGCTAGCCCTTCATAGATGAGTTTTGTGAACTCTGAATATGAATCCCATCCATGAAATCGTCCCACTCGAGTTTTTTGGTTCTACAATTGTGTTTCTGAGTTCTGATTAGCATCTTCCAAAAGAAGTAATAGTTCAGTTTTTTATAGAATAAGCTTTCATTATGTCACCACCACTACTATCTACAAATGGTCTCATGATTAAATTTCTGTGTGATCTATGAACTCCTCTGCATTCTGATCCATACCAAATGAGATATAGTGCTCAAGGAGAAAGAAGTTAAAGCCATACTGGATAATTGTGAGCTTTTTGAGCTAGATATGTGCCTTTTCACCAACTCTATTAGCAATAGGACCATATTTTGAATATTTTAGCCTATGCTTATTATGATTTGAACCTATAACGTGTACCAGGATCATAAAACTATTAAGATGATTAATCTGCTCTCTTTTTAGTGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGAATAATTAATGACAAGCACATTAAGGAACTTGGTCCCAATGGTTAGGTAGCTCTAATTTATCCATTCTAGGGAGGAAGAAGTTATGGGCCATCTATCTGTTTGTCAAATTATTACCCAATGGAATAATTGATATCTAAAACATGAGGCGTGGATTTAATTGGCCATTCTTATAACATGCTTTAAACCTTACCAAGTTGACCACCACAAGCTAGCCATTAGTGTTTGGTGGTTGCAACAGGGACTCAATGGTAGTGGGAGTTGGAGGCCCTCATTATGCAGTCATGTGCCTCTCCCTTACCAGGAACTCCCAACCAGGAACTCCCAAGATTTTTTTTAACGGCTCAAGCCTATCGCTAGCAAATATTGTCATCTTAGGACTTTCTCTTTCGGGCTTCCCTTTAAGGTTTTGAAAATTCGTTTACTAGAGAGAGGTTTTCATACTCTTATAAAGGGTGTTCCGTTCTCCTCAACCGATGTGGGATCTCACAATCCACCCTCTTTCAGGGTCTAGCGTCCTCGCTGGCACTCGTTTCTCTATCCAATCGCTATGGGATCTCCAACATTTTCGCTGGCATTCGTTCCTTCTCCAATCTCTATGGGATCTCACAATCCTTTTAAAATGGTGTTTCGTTCTCCTCCTCAACCAATATGGGATTTCACAATTCACCCTCCTTCAGGGCACAACGTCTTCGCTGGCACTCCTTCCTCTCTGCAATTGCTATAGAATCTCACAATCTTTATCTTTTTTGTTCTGTTTTTTTTTTCCTCCCCTTTTTTTGATGAAGATTTTGACAATATTACCACTTGCAATTATTAACTGTGTTGGTTGGTTTGTGGCTTTCCTGTTTTGAGTGATTATGTACAAAGCTTTCAACTCACAACATCCTTATAGATATCTGGTGTGAGAAATGTGATGATGAGTTGTCTCAATTGCATCTGGAATGTGACCATCCTTTTTTTGGCACACACAAAAGCATGTTGAAATATTCATCTGGACATTCTTCCTTTTTTCTCCCTTTCTCTCTCTTTGAATGCTAATAATTGATAGCCTCCAAACTTTATTTTGATGTCAGGTTGCCCTTTCTGATTTAGGCTTCATTAGCAATGAGTTTGTTTGTTGCATTTACCACTTTTCCCTCAATTTAAGGACTAGTTGGCAAGCTCAAAAGTGGTCATCATCACCTACTCTTTATATGCTTTCATTTTATACAATCATAGGTTAGATTCCACATCCGTCGACACTGGTACTGAAAGAGAGTGAATTGTAAGATCCCACATCGATTGGAGAGGGGAACGAAACATTCTTTATAATGGTGTGAAAATCTCTACCTAACAGACGCGTTTTAAAAACTTTGAGACAAACTCCAAAAGAGAAAGCACAAAGAGAACAATATCTGCCAACGATGAAAAGACAGAATACTACTTGTTTCTCGTGCTTCTCGTGCTGTCGTAGTAGAGCCATCCATCAGTTAGTCACTTACCCTTACCCATCAAGGTTTTTGGATTCTTTTAAGGCTCAAAATCTTTCGTTTTCTTCTTTGTTCAAAATTACTTTTTTTTTTTTTTTTTTTTTACCCAATTTTTGAATTGCCCTTTGATTTTGACACTTCATTAGTATCAATAAAACATATGGTTAAGCCTAACCAAATCTCATATTTTGTCACTTCTTTAGTACTTTTCATAATTTATTTGTCCATTTATATGATTTTAATCTAACTTATCTAACTTATTCAAATTTTATATTTTTAAATGTTTTAATTTAGCTTATTTCAATAA

mRNA sequence

ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAATGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGTGTCCAGACCGTGGTATTAATGTCACTGTTTATACTTCTTATTCTTTATTCAAATGCTTCTGTAACAAAAGAGATCTTTATAAAACTTCTAGATTTCTGGATAGTACCATGGCTGATTGCTTTTTACTGCTTGAAAATATCATTAGCCATCTCAACAACATTATCAGTCTTCTTGATGGTAGTTTCTGTATAATCATGGTGTCTATGGGAAGCGAAACAGAACATTGGCATACCAATTGGGATGATTTGCCTTGCTCCATTTATATCCTTACACCCAGACATTTTTGTAGCTTATTTCAATAA

Coding sequence (CDS)

ATGGACACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATTCAAGTACTTAAAGATATGATGGGCAAGGGTATTGCACCTAATGTATTTACTTACAGTACCCTAATGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGTAGATTTCAAGAAGCTGCAAACTTCTTGGATGAGATGTGTCCAGACCGTGGTATTAATGTCACTGTTTATACTTCTTATTCTTTATTCAAATGCTTCTGTAACAAAAGAGATCTTTATAAAACTTCTAGATTTCTGGATAGTACCATGGCTGATTGCTTTTTACTGCTTGAAAATATCATTAGCCATCTCAACAACATTATCAGTCTTCTTGATGGTAGTTTCTGTATAATCATGGTGTCTATGGGAAGCGAAACAGAACATTGGCATACCAATTGGGATGATTTGCCTTGCTCCATTTATATCCTTACACCCAGACATTTTTGTAGCTTATTTCAATAA

Protein sequence

MDTKGCSPSVVTYTSMIHGLCAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLDSTMADCFLLLENIISHLNNIISLLDGSFCIIMVSMGSETEHWHTNWDDLPCSIYILTPRHFCSLFQ
Homology
[Close]
BLAST of CmoCh18G003730 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-16
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M  K C+P+VVTYTS+I+GLC       A++ L++M  KGI PNVFTYS+LMDG CK G 
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGR 277

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLD 105
           SLQA         L EM   RG    + T  +L    C ++ + +    LD
Sbjct: 278 SLQAME-------LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLD 321

[Close]
BLAST of CmoCh18G003730 vs. ExPASy Swiss-Prot
Match: Q9C8T7 (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX=3702 GN=At1g63330 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-11
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKG  P+VVTY+S+I  LC       A Q+L DM+ K I PN+ T++ L+D F K G 
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG- 270

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLDSTMA-DCF 112
                +F EA    D+M   R I+  ++T  SL   FC    L K  +  +  ++ DCF
Sbjct: 271 -----KFVEAEKLHDDMI-KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322

[Close]
BLAST of CmoCh18G003730 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-11
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0 

Query: 5   GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA 64
           GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++++G CK+G+    
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN---- 510

Query: 65  SRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFL 104
              +EA   + E     G+N    T  +L   +C   ++ K    L
Sbjct: 511 --IEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549

[Close]
BLAST of CmoCh18G003730 vs. ExPASy Swiss-Prot
Match: P0C7Q7 (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKG   SVVTY S++ GLC          +LKDM+ + I PNV T++ L+D F K G 
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG- 313

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLD 105
                + QEA     EM   RGI+  + T  +L   +C +  L + +  LD
Sbjct: 314 -----KLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

[Close]
BLAST of CmoCh18G003730 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+  G SPSVVTY ++I+G C       AI VL+DM  KG++P+V +YST++ GFC++  
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKR------DLYK 99
             +A R +       EM  ++GI     T  SL + FC +R      DLY+
Sbjct: 466 VDEALRVKR------EMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

[Close]
BLAST of CmoCh18G003730 vs. ExPASy TrEMBL
Match: A0A6J1CDW1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010648 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGH
Sbjct: 236 METKGCSPSVVTYTSLIHGLCQLNNVDEAVGLLEDMMGKGIEPNVFTYSSLMDGFCKAGH 295

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 296 SSRARDLLELMVQKRLRPNMISYSTLINGLCKEGKLNEALEILDRMKLQGLKPDAGLYGK 355

[Close]
BLAST of CmoCh18G003730 vs. ExPASy TrEMBL
Match: A0A6J1CF14 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010648 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGH
Sbjct: 217 METKGCSPSVVTYTSLIHGLCQLNNVDEAVGLLEDMMGKGIEPNVFTYSSLMDGFCKAGH 276

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 277 SSRARDLLELMVQKRLRPNMISYSTLINGLCKEGKLNEALEILDRMKLQGLKPDAGLYGK 336

[Close]
BLAST of CmoCh18G003730 vs. ExPASy TrEMBL
Match: A0A5D3DS89 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G001080 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 85/237 (35.86%), Postives = 97/237 (40.93%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSV+TYTS+IHGLC       A+++L+DM  K I PNVFTYS+LMDGFCKAGH
Sbjct: 236 METKGCSPSVITYTSIIHGLCQLNNVDEAVRLLEDMKDKNIEPNVFTYSSLMDGFCKAGH 295

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 296 SSRARDILGLMVQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGLKPDAGLYGK 355

[Close]
BLAST of CmoCh18G003730 vs. ExPASy TrEMBL
Match: A0A6J1KLZ3 (pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita maxima OX=3661 GN=LOC111495767 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 86/237 (36.29%), Postives = 96/237 (40.51%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+ KGCSPSVVTYTSMIHGLC       A+ +L+DMM KGI PNVFTYS+LMDGFCKAGH
Sbjct: 217 MEKKGCSPSVVTYTSMIHGLCQLNNVDEAMDLLEDMMSKGIEPNVFTYSSLMDGFCKAGH 276

Query: 61  SLQA-------------------------------------------------------- 112
           SL+A                                                        
Sbjct: 277 SLRARDLLELMVQKRLRPNMISYSTLINGLCKEGKVNEALEILDRMKLQGLTPDAGLYGK 336

[Close]
BLAST of CmoCh18G003730 vs. ExPASy TrEMBL
Match: A0A1S3B6P2 (pentatricopeptide repeat-containing protein At5g46100 OS=Cucumis melo OX=3656 GN=LOC103486611 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 85/237 (35.86%), Postives = 97/237 (40.93%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSV+TYTS+IHGLC       A+++L+DM  K I PNVFTYS+LMDGFCKAGH
Sbjct: 217 METKGCSPSVITYTSIIHGLCQLNNVDEAVRLLEDMKDKNIEPNVFTYSSLMDGFCKAGH 276

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 277 SSRARDILGLMVQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGLKPDAGLYGK 336

[Close]
BLAST of CmoCh18G003730 vs. NCBI nr
Match: KAG7012455.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-23
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 1  MDTKGCSPSVVTYTSMIHGLCAIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQASRF 60
          M+TKGCSPSVVTYTSMIHGLCA+QVL+DMMGKGIAPNVFTYSTL+DGFCKAGHSLQA   
Sbjct: 1  METKGCSPSVVTYTSMIHGLCAMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDL 60

Query: 61 QEAA 65
           E A
Sbjct: 61 LEVA 64

[Close]
BLAST of CmoCh18G003730 vs. NCBI nr
Match: XP_038893902.1 (pentatricopeptide repeat-containing protein At5g46100 [Benincasa hispida])

HSP 1 Score: 118.2 bits (295), Expect = 6.7e-23
Identity = 86/237 (36.29%), Postives = 97/237 (40.93%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSVVTYTS+IHGLC       A+ +L+DM+GKGI PNVFTYS+LMDGFCKAGH
Sbjct: 217 METKGCSPSVVTYTSLIHGLCQLNNVDEAMGLLEDMVGKGIKPNVFTYSSLMDGFCKAGH 276

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 277 SSRARDLLELMVQKRLRPNVISYSTLINGLCNEGKLSEALEILDRMKLQGLKPDAGLYGK 336

[Close]
BLAST of CmoCh18G003730 vs. NCBI nr
Match: KAA0057015.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26443.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-22
Identity = 85/237 (35.86%), Postives = 97/237 (40.93%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSV+TYTS+IHGLC       A+++L+DM  K I PNVFTYS+LMDGFCKAGH
Sbjct: 236 METKGCSPSVITYTSIIHGLCQLNNVDEAVRLLEDMKDKNIEPNVFTYSSLMDGFCKAGH 295

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 296 SSRARDILGLMVQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGLKPDAGLYGK 355

[Close]
BLAST of CmoCh18G003730 vs. NCBI nr
Match: XP_022139832.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia] >XP_022139834.1 pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-22
Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGH
Sbjct: 217 METKGCSPSVVTYTSLIHGLCQLNNVDEAVGLLEDMMGKGIEPNVFTYSSLMDGFCKAGH 276

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 277 SSRARDLLELMVQKRLRPNMISYSTLINGLCKEGKLNEALEILDRMKLQGLKPDAGLYGK 336

[Close]
BLAST of CmoCh18G003730 vs. NCBI nr
Match: XP_022139830.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia] >XP_022139831.1 pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-22
Identity = 84/237 (35.44%), Postives = 95/237 (40.08%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKGCSPSVVTYTS+IHGLC       A+ +L+DMMGKGI PNVFTYS+LMDGFCKAGH
Sbjct: 236 METKGCSPSVVTYTSLIHGLCQLNNVDEAVGLLEDMMGKGIEPNVFTYSSLMDGFCKAGH 295

Query: 61  SLQA-------------------------------------------------------- 112
           S +A                                                        
Sbjct: 296 SSRARDLLELMVQKRLRPNMISYSTLINGLCKEGKLNEALEILDRMKLQGLKPDAGLYGK 355

[Close]
BLAST of CmoCh18G003730 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-17
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M  K C+P+VVTYTS+I+GLC       A++ L++M  KGI PNVFTYS+LMDG CK G 
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGR 277

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLD 105
           SLQA         L EM   RG    + T  +L    C ++ + +    LD
Sbjct: 278 SLQAME-------LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLD 321

[Close]
BLAST of CmoCh18G003730 vs. TAIR 10
Match: AT1G63330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKG  P+VVTY+S+I  LC       A Q+L DM+ K I PN+ T++ L+D F K G 
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG- 270

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLDSTMA-DCF 112
                +F EA    D+M   R I+  ++T  SL   FC    L K  +  +  ++ DCF
Sbjct: 271 -----KFVEAEKLHDDMI-KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 322

[Close]
BLAST of CmoCh18G003730 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0 

Query: 5   GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA 64
           GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++++G CK+G+    
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN---- 510

Query: 65  SRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFL 104
              +EA   + E     G+N    T  +L   +C   ++ K    L
Sbjct: 511 --IEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549

[Close]
BLAST of CmoCh18G003730 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 0 

Query: 5   GCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGHSLQA 64
           GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++++G CK+G+    
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN---- 510

Query: 65  SRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFL 104
              +EA   + E     G+N    T  +L   +C   ++ K    L
Sbjct: 511 --IEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549

[Close]
BLAST of CmoCh18G003730 vs. TAIR 10
Match: AT1G12700.1 (ATP binding;nucleic acid binding;helicases )

HSP 1 Score: 68.2 bits (165), Expect = 7.4e-12
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 1   MDTKGCSPSVVTYTSMIHGLC-------AIQVLKDMMGKGIAPNVFTYSTLMDGFCKAGH 60
           M+TKG   SVVTY S++ GLC          +LKDM+ + I PNV T++ L+D F K G 
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG- 313

Query: 61  SLQASRFQEAANFLDEMCPDRGINVTVYTSYSLFKCFCNKRDLYKTSRFLD 105
                + QEA     EM   RGI+  + T  +L   +C +  L + +  LD
Sbjct: 314 -----KLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

The following BLAST results are available for this feature:
BLAST of CmoCh18G003730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNL28.3e-1643.24Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
Q9C8T73.6e-1137.82Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX... [more]
Q0WVK78.0e-1133.96Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop... [more]
P0C7Q71.0e-1036.94Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS... [more]
Q9FIX31.8e-1038.74Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX... [more]
BLAST of CmoCh18G003730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CDW12.8e-2235.44pentatricopeptide repeat-containing protein At5g46100 isoform X1 OS=Momordica ch... [more]
A0A6J1CF142.8e-2235.44pentatricopeptide repeat-containing protein At5g46100 isoform X2 OS=Momordica ch... [more]
A0A5D3DS892.8e-2235.86Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1KLZ32.8e-2236.29pentatricopeptide repeat-containing protein At5g46100 OS=Cucurbita maxima OX=366... [more]
A0A1S3B6P22.8e-2235.86pentatricopeptide repeat-containing protein At5g46100 OS=Cucumis melo OX=3656 GN... [more]
BLAST of CmoCh18G003730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012455.13.9e-2385.94Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_038893902.16.7e-2336.29pentatricopeptide repeat-containing protein At5g46100 [Benincasa hispida][more]
KAA0057015.15.7e-2235.86pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26443... [more]
XP_022139832.15.7e-2235.44pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica char... [more]
XP_022139830.15.7e-2235.44pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica char... [more]
BLAST of CmoCh18G003730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46100.15.9e-1743.24Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63330.12.6e-1237.82Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G05670.15.7e-1233.96Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G05670.25.7e-1233.96Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G12700.17.4e-1236.94ATP binding;nucleic acid binding;helicases [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 39..55
e-value: 0.0021
score: 16.1
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 32..69
e-value: 1.9E-9
score: 37.0
coord: 4..21
e-value: 1.5E-6
score: 27.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..150
e-value: 4.4E-21
score: 77.6
NoneNo IPR availablePANTHERPTHR47933:SF25EMP16coord: 1..57
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G003730.1CmoCh18G003730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding