CmoCh16G013280.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTGATTTATTGTACTGAATGTTCTAAGAAATGTGTTTATTTGTTGGGGGTTCTTTTACAAAGTTACTTATCTTGTGGTCGTGTAGGTTTTTATGTATATTGCGCTGATCTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGTAATCACTCTCATTGCCAGCAAACTTCTGAAGAACAACTAAAAAGAAATTTCATTTCATTTAAGTATTAACTATTATAGTGTCTTGATGCTCCCCCTTCTGCAGGAAGAGTTTTATCTTGGAAGGCTGGAGGTATCGTAAATGATTATGTGAAGGTAGAACAATAATCACTACTCAATTGTCCGTAAATAACCTCTTATATCATAGTCAATTTATTTTATCCCTCAAGCATAATACCACTACCCCTATTCGAAAAATGATACTTACATGTTCAGCATCCCTATACATGATACGATAGAATTAGGAATATGATTTAGGGTATTGAGGCTCTGATAGTGGCTAATGTTTGGCATGGGATGGTAACTGTTGGGCTTTGATTGAGGAGGTACTGCTAGGTTTGCTTTATTGTGGAAGAAGGCAAAATTTTGTAGCATGCTAGTTTCATTACTATGTTGTGGGATTTGTCTTGAGAGAGACAATAGGATTTTTAGGGGGTGGAGAGGTCATGAAATGAGGTGGGGGAGGTGGTGAGGTTTAACGCTTCATTGTGGCATCGGTTACAAGATCTTTTTGTACTTATGATCTTGGTTTGATTTTGTTACAAGTGAGTCCCTTTTTATAGTTTTTCCTGGATTCTTTTTCATGTTTTTTGTATGTCCTTGTAAATTCTTTCATTTTTTTTTTTCACTAAAAGCTCGGTTTCTTACCCCAAAAAATATTATAGAGTAATTCGAGGGGAGTTAGAGTGATTCGTAATAAACAAAGTGAGGCGGAAAAGTTAAAGGTAGGCAATAGTTTTGTTGGATTAGGGCTTGAGTAAGTATACTATGAGAGGGAAGTTCCCAAGTACCTCGAATACGAGGGGGTGTTATATTTGATTTCTTCTGTAGAATCGATATGTTCGGGTTCTAGTTCTATTAGCATACTACTGATGATAACATGAAACTACTGTCCATAGCTACAATCTTTACCTGATTAGTTATGTTGTAATGATGAATTGCAGGTTGGAATTATACCTTGGTTGATACTGTCGACACGGGTTAGCAAATTTGTATGTCAGGTTGTCCGCTGAAAAGGTGATTGAAGATAAATGTGATGTAGAATGAATGATACATCACCGTATGCTATGTGTGACGGTCATATGCTATGGGTGACGGTCATGTTTGAAAAGGCGACGATTGTGACACTGTGTAAAATGTTGGGCAACCCATCTTTTCCTAAATTTCAATTAGGAGAGGCTGGACAAGTTTTTCAGCCCCACCACTTTTTCTTCTTATATTCATTCAAATGAGGTGCAGCATTGTTGCTATTTTCCTTTTCAATAATATTCTTATTCTTTTTTTTTTTTTTTTTAAATTATAATATTATTATTGGTATATCACAAGTATTTCAAAATTATTATAGAAATTATTTGATAATTGTGGACATGTATTAGGATCTGGAATAGTGTCTATGTTTCTATATTTTTA ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTTTTTATGTATATTGCGCTGATCTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGAAGAGTTTTATCTTGGAAGGCTGGAGGTTGGAATTATACCTTGGTTGATACTGTCGACACGGGTTAGCAAATTTGTATGTCAGGTTGTCCGCTGAAAAGGTGATTGAAGATAAATGTGATGTAGAATGAATGATACATCACCGTATGCTATGTGTGACGGTCATATGCTATGGGTGACGGTCATGTTTGAAAAGGCGACGATTGTGACACTGTGTAAAATGTTGGGCAACCCATCTTTTCCTAAATTTCAATTAGGAGAGGCTGGACAAGTTTTTCAGCCCCACCACTTTTTCTTCTTATATTCATTCAAATGAGGTGCAGCATTGTTGCTATTTTCCTTTTCAATAATATTCTTATTCTTTTTTTTTTTTTTTTTAAATTATAATATTATTATTGGTATATCACAAGTATTTCAAAATTATTATAGAAATTATTTGATAATTGTGGACATGTATTAGGATCTGGAATAGTGTCTATGTTTCTATATTTTTA ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTTTTTATGTATATTGCGCTGATCTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGAAGAGTTTTATCTTGGAAGGCTGGAGGTTGGAATTATACCTTGGTTGATACTGTCGACACGGGTTAG MTLLPDQESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG Homology
BLAST of CmoCh16G013280.1 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of CmoCh16G013280.1 vs. ExPASy TrEMBL
Match: A0A6J1E9M6 (uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC111431128 PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 9.4e-26 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
BLAST of CmoCh16G013280.1 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 3.6e-25 Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0
BLAST of CmoCh16G013280.1 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21 Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0
BLAST of CmoCh16G013280.1 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20 Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0
BLAST of CmoCh16G013280.1 vs. ExPASy TrEMBL
Match: A0A6J1CUP1 (uncharacterized protein LOC111014752 OS=Momordica charantia OX=3673 GN=LOC111014752 PE=3 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20 Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 0
BLAST of CmoCh16G013280.1 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 66.6 bits (161), Expect = 9.9e-12 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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