CmoCh16G013280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G013280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Location	Cmo_Chr16: 9405412 .. 9407134 (+)
RNA-Seq Expression	CmoCh16G013280
Synteny	CmoCh16G013280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTGATTTATTGTACTGAATGTTCTAAGAAATGTGTTTATTTGTTGGGGGTTCTTTTACAAAGTTACTTATCTTGTGGTCGTGTAGGTTTTTATGTATATTGCGCTGATCTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGTAATCACTCTCATTGCCAGCAAACTTCTGAAGAACAACTAAAAAGAAATTTCATTTCATTTAAGTATTAACTATTATAGTGTCTTGATGCTCCCCCTTCTGCAGGAAGAGTTTTATCTTGGAAGGCTGGAGGTATCGTAAATGATTATGTGAAGGTAGAACAATAATCACTACTCAATTGTCCGTAAATAACCTCTTATATCATAGTCAATTTATTTTATCCCTCAAGCATAATACCACTACCCCTATTCGAAAAATGATACTTACATGTTCAGCATCCCTATACATGATACGATAGAATTAGGAATATGATTTAGGGTATTGAGGCTCTGATAGTGGCTAATGTTTGGCATGGGATGGTAACTGTTGGGCTTTGATTGAGGAGGTACTGCTAGGTTTGCTTTATTGTGGAAGAAGGCAAAATTTTGTAGCATGCTAGTTTCATTACTATGTTGTGGGATTTGTCTTGAGAGAGACAATAGGATTTTTAGGGGGTGGAGAGGTCATGAAATGAGGTGGGGGAGGTGGTGAGGTTTAACGCTTCATTGTGGCATCGGTTACAAGATCTTTTTGTACTTATGATCTTGGTTTGATTTTGTTACAAGTGAGTCCCTTTTTATAGTTTTTCCTGGATTCTTTTTCATGTTTTTTGTATGTCCTTGTAAATTCTTTCATTTTTTTTTTTCACTAAAAGCTCGGTTTCTTACCCCAAAAAATATTATAGAGTAATTCGAGGGGAGTTAGAGTGATTCGTAATAAACAAAGTGAGGCGGAAAAGTTAAAGGTAGGCAATAGTTTTGTTGGATTAGGGCTTGAGTAAGTATACTATGAGAGGGAAGTTCCCAAGTACCTCGAATACGAGGGGGTGTTATATTTGATTTCTTCTGTAGAATCGATATGTTCGGGTTCTAGTTCTATTAGCATACTACTGATGATAACATGAAACTACTGTCCATAGCTACAATCTTTACCTGATTAGTTATGTTGTAATGATGAATTGCAGGTTGGAATTATACCTTGGTTGATACTGTCGACACGGGTTAGCAAATTTGTATGTCAGGTTGTCCGCTGAAAAGGTGATTGAAGATAAATGTGATGTAGAATGAATGATACATCACCGTATGCTATGTGTGACGGTCATATGCTATGGGTGACGGTCATGTTTGAAAAGGCGACGATTGTGACACTGTGTAAAATGTTGGGCAACCCATCTTTTCCTAAATTTCAATTAGGAGAGGCTGGACAAGTTTTTCAGCCCCACCACTTTTTCTTCTTATATTCATTCAAATGAGGTGCAGCATTGTTGCTATTTTCCTTTTCAATAATATTCTTATTCTTTTTTTTTTTTTTTTTAAATTATAATATTATTATTGGTATATCACAAGTATTTCAAAATTATTATAGAAATTATTTGATAATTGTGGACATGTATTAGGATCTGGAATAGTGTCTATGTTTCTATATTTTTA

mRNA sequence

ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTTTTTATGTATATTGCGCTGATCTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGAAGAGTTTTATCTTGGAAGGCTGGAGGTTGGAATTATACCTTGGTTGATACTGTCGACACGGGTTAGCAAATTTGTATGTCAGGTTGTCCGCTGAAAAGGTGATTGAAGATAAATGTGATGTAGAATGAATGATACATCACCGTATGCTATGTGTGACGGTCATATGCTATGGGTGACGGTCATGTTTGAAAAGGCGACGATTGTGACACTGTGTAAAATGTTGGGCAACCCATCTTTTCCTAAATTTCAATTAGGAGAGGCTGGACAAGTTTTTCAGCCCCACCACTTTTTCTTCTTATATTCATTCAAATGAGGTGCAGCATTGTTGCTATTTTCCTTTTCAATAATATTCTTATTCTTTTTTTTTTTTTTTTTAAATTATAATATTATTATTGGTATATCACAAGTATTTCAAAATTATTATAGAAATTATTTGATAATTGTGGACATGTATTAGGATCTGGAATAGTGTCTATGTTTCTATATTTTTA

Coding sequence (CDS)

ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTTTTTATGTATATTGCGCTGATCTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGAAGAGTTTTATCTTGGAAGGCTGGAGGTTGGAATTATACCTTGGTTGATACTGTCGACACGGGTTAG

Protein sequence

MTLLPDQESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

Homology

[Close]

BLAST of CmoCh16G013280 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 8   ESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 67
           E  +KEIK SY +Y + LL SKV +Y+ L+  FWR  +A +   LVQPFG +LSW  GG
Sbjct: 90  EQHHKEIKLSYDMYGKGLLASKVVIYLILVLCFWRTPIAIIAKQLVQPFGTLLSWGTGG 148

[Close]

BLAST of CmoCh16G013280 vs. ExPASy TrEMBL
Match: A0A6J1E9M6 (uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC111431128 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.4e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 7   QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 66
           QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
Sbjct: 91  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 150

[Close]

BLAST of CmoCh16G013280 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-25
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 7   QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 66
           QESRNKEIKTSYGLYSRVLLISKVFMYI L+FWFWRVSVATVPHHLVQPFGRVLSWKAGG
Sbjct: 93  QESRNKEIKTSYGLYSRVLLISKVFMYITLVFWFWRVSVATVPHHLVQPFGRVLSWKAGG 152

[Close]

BLAST of CmoCh16G013280 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 7   QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 66
           QESRNKEIKTSYGLYS+VLLISKV +YI L+ WFWR SVATVPHHLVQPFG+ LSWKAGG
Sbjct: 91  QESRNKEIKTSYGLYSQVLLISKVIIYIVLVCWFWRASVATVPHHLVQPFGKFLSWKAGG 150

Query: 67  WNYTLVDTVDTG 79
              T+ D V  G
Sbjct: 151 ---TVNDYVKVG 159

[Close]

BLAST of CmoCh16G013280 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 7   QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 66
           QESRNKEIKTSYGLYS+VLL+SKV ++I L+ WFWR SVATVPHHLVQPFG+ LSW+AGG
Sbjct: 89  QESRNKEIKTSYGLYSQVLLVSKVIIHIVLVCWFWRASVATVPHHLVQPFGKFLSWRAGG 148

Query: 67  WNYTLVDTVDTG 79
              T+ D V  G
Sbjct: 149 ---TVNDYVKVG 157

[Close]

BLAST of CmoCh16G013280 vs. ExPASy TrEMBL
Match: A0A6J1CUP1 (uncharacterized protein LOC111014752 OS=Momordica charantia OX=3673 GN=LOC111014752 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 7   QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 66
           QESR+KE+KTSYGLYS+VLL SKV +YIAL+ WFWR SVATVPHHLVQPFG++LSW+AGG
Sbjct: 91  QESRSKEMKTSYGLYSQVLLTSKVVIYIALVLWFWRASVATVPHHLVQPFGKLLSWRAGG 150

Query: 67  WNYTLVDTVDTG 79
              T+ D V  G
Sbjct: 151 ---TVNDYVKVG 159

[Close]

BLAST of CmoCh16G013280 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-12
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 8   ESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG 67
           E  +KEIK SY +Y + LL SKV +Y+ L+  FWR  +A +   LVQPFG +LSW  GG
Sbjct: 90  EQHHKEIKLSYDMYGKGLLASKVVIYLILVLCFWRTPIAIIAKQLVQPFGTLLSWGTGG 148

The following BLAST results are available for this feature:

BLAST of CmoCh16G013280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H5D2	1.4e-10	50.85	Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1	[more]

BLAST of CmoCh16G013280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9M6	9.4e-26	100.00	uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1L884	3.6e-25	96.67	uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212...	[more]
A0A1S3BKE1	1.4e-21	76.39	uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=...	[more]
A0A0A0L4T9	1.5e-20	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1	[more]
A0A6J1CUP1	1.5e-20	72.22	uncharacterized protein LOC111014752 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of CmoCh16G013280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16444.1	9.9e-12	50.85	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11760:SF48	PROTEIN GET1-LIKE ISOFORM X1	coord: 5..67
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 5..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G013280.1	CmoCh16G013280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048767	root hair elongation
biological_process	GO:0071816	tail-anchored membrane protein insertion into ER membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0043529	GET complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043621	protein self-association