CmoCh14G003950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL33
Location	Cmo_Chr14: 1862809 .. 1868258 (+)
RNA-Seq Expression	CmoCh14G003950
Synteny	CmoCh14G003950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGCAAAAGCTTATATGGGTCTATGCCTTCGGTGCCTCCCCACACTATTCTGTACTATACAATTGAGGGGGTGGCAACACACACAACTACGATGTTATTTTACAGACTGCTCAGTGTAACTGTTGTTATATCTTAAAACGCTGGCAACTCCTCAAAGTTGCATTTCTTACCCTCTAAAGAGCAGAGCGGTAGCTGTACAGGTGAATAAATGTGTTTTCTTTCTTCCCTATTGGTGCTGCCTATTATATAATTTTTACTGTAGATCTACAAATATATAGTTTTATCAACTGAAAGTGGAGATAAATACAGAGAAAAAGCGTGGCTAGTAAAGCAAAATCTCTGTACATTAGCTAAGCGTTGGGCTACTTTAGTTGCCTCGTTTCAGGGTTTTAATGGACTCATTTTTCTTCGTTACCTGCATTAGACTCATTTTTATATGCAATGCTTTTATATATATATATTTTTTTTTTACCTAAATTATTTTTGGAAATAAACATTAATCATAAAAGAATACTTTTGAAGAAATCAGAATGTTTCTTTTTTACAACGTGTGACCGTATATTAAAATACTTTATAATTAAATACTCTTACAAAAGTAATTATAATTATTTTTTTTAAAATCACTCTTTCTAAAATCAGCCTCGAACATTTACTCATATAGCGGTCCAAATGGTTGTGTGAAAGTGAATTTTAATAAATCATATTCTCTAAAATTACTACTTCTACAATCAATTTCAAATATCCATTAAATAAATAATATGAATATTAGAGTAACATTTAAAAATAGTAAATATATTTATACCAGTATTTTCGGTCAAGCATAATCGTCGATCTCCATCCAACAAATGATCGTAAAACAGTCCCCACAAAGAATCGATAGACCCGCGAAGTATAAAATCAAAGCCGGGAGAAATTTCTCAACGTATGAGGGCGTTCGAGGCAGAGAAGGCTGAAGCCTAAGGAAGATCGGAGAATTTTGCTCTTCCAGATTGAATAGTAGGGGCTCCATTTGATTTCTCTCAGGTTTTCGCTTTCTTCTTCTCCAACCTCCCCGTTTTTTTTTTTTTTTTTTTTTTTTGTTTATTTTTTTTTTTTGTTTTGCTTACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTAATCTTTTAATGTCGAAGTTTGTGTGCTATCCATTTGATCACGTTCGAAGAACAGTTGACGTGAAAAAGGCTGCAACCATGTCCGACTTTTTCTATTTGTCGTCATCGCACTATGAGAATTGATCTTTCCTTGAGATCCGTTTGTTTCGCTGTATGGCAGCATGCAAACATTTTGATTTCTCCGAAGTAGATCTCTTTTGTTCTGCAGAAATATTGGAGCAGATGATCGAAGGAAAAGTTTAGTATTACTTTTGATAAATTTTCTTTGGCTGTTTATTGTTGATCGAAGGAAAAGTTGTGTTTGAGTCTTGCTTTTGATAAAATTTCTTAGGCTGTTTATGGTTGATCACAATTATATATTTAGTGGATATCATGTTTGGTAATGAATGATCGTCCCTCTGACTATTTATTTTGAGTGGTGGCATAAATCTGTGGTAGCTTGCTGATTGATGTGTTACAAATTTAGGTTATATCTGCATCTTAATGTTCTGCACTTCTATTTGTTGTTTATAAACACCATGATTTGTTTTAATTTCCCTGTTGTTGTTGTAGGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGTGTTATGGCAGGAGACATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCCTACAATTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGTTTGCTACTGCAATTTATTTTTCATGGCTATTTCACCCGTTGCGTCTTTTATACATACAATTATGTCTTGGTTCTTCGTTTCTCATCACATTTATTACATGCATGCTAAGGACAATGCTAGGATATGCTGTATGTGGTACTTAAATTATATATTTGTTGAAGTACGAAGAAATGGTATCTTTTACAAGTAAAAATGTTCTCTGGTTGATTAATTTTTCTGCTTGCGTCTAGTTTTATTTATTTATTTGTTTTTATTGTTATTATTTGAAGGAAGGAGATCTTGCAAGTTCGAAGATCATAATTTATTTTCTTTTGTAAAGTATTTTATATTGTATATTACTTGGGTGGTTGTCTTTTGTATTTTCAAATTGAGAAAAAACCACTTCCGTTAAGAAAAGGAACAAAGGGATAAAGGAGAATGTGTTTGCTTTTGTTCTGCATTGAGCTGGTATACTTATTTGCACTTGTTTTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGCATACTTTTGAAGATTGTTCTTTTGCTTTGTATGTATGGATTTTTTTTCCTGTATGTTTAACTCATTTTAGTCTCTTAATTTTGTACGCATATGATCTATATATTTGTGAATATATTTTCTGGACGGTTATTTCTATTGATTGCTTAACGATGTGGAATTGGTCCCTCTGTTTTCAATTATTTGGTTTTCCAATAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTGTTGAAGAGAACCAATGAAGTAACAAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTATTGTGTTGAAGACATTCAAGTAAGTTCTGGTGACTTAATGTGTGCATGAAGATTCGGTGGAAGTTGGGTTTGAATACATTGAGAAGTTCCAAGTCTTGAAGAATTTCATCTCAATTTTTTCTTTGCCACTCGGAAGGTTAGCATAGTGATGTTAATATTCTCTTGTTAGAGCTCTATGTAGATGTTTCTGTCACTCGTAATTTATCTCTGAATGGATTAATGATGAATGATACCGCTGGTCAAAGTGACACTTTCTGAAATTTTCTGAATCAGTTGACATCCATTTTTCTAAATTATATTATGAACAGTAACATGCTTGTGAGTTCAGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCGAGGTTGCTATCTCTTTCTTTAAACTGATTTCTAGTAACCAACTGCTATTGCTAAGCTAGGATGCTTAGTGATGAAAATATAACTCTTGACTTCTACAAATTCTCGTGAAGCATCCTCAATGTTTTCCTATATCTGAATAATTTCTTTCTAGACTGCGGTACAACCAGAGCATTGCTCCAGATACAGCTTTCTTGTCTTTGAAGTTTTGCCCAAAGAGATATTCATCATTAATATGGAAAATCTTGGATGTTACTAGTGGTATAACGCTACACCATTGCATACTGGAAGGATAAAAAAGAATTATTTCACCAGACTCCTTTAGCGAAAACGCATGGAGGAGAAACTACTGCTCTTCACTTGTGGAACAGAAATGAGGGATTGAGACTTTGTCTGGGTTTTCTTTTGAATGTGATTGAGTGTTGAACGCATGAAAAACGGACCAAATAAAAGGTTTTTCCACTTTAGGTATCTTGAGTTTCCATTTCTTGGAGAAAAATCCAGCCTGAGGTTTGATTCCATCAACATTGAAGTGAATTACTCGAGTAAATTGACTTCAGCCATTTGACACCCATCATCGTGTATGCTTTTAGGGGAAAGAAAAGTTGTATACTTGATTCAAAATTGCCTCTGGCGTGGTGTACTTTATCCTTGGCCTTCTCTTTTTTGTCTCCTTCTTTTGTTATGTGAAAAGTTTCTGGCTGATAGCAGCAACTACTCAGCTGATGCACCAGTACAGTCTGTTTTCTTTTTCTTACCAATCTATAGTCCATTTTTTGAGAACTCCTTTATTAATTGTAAATATCAATACTCATTAGTATTGTTCATACATAAAATTGTTATCAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCAAAAAAATGCACGTAGTACAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTAGGCGGTCATAATTTGTATTTTTTCCCATTATGATTATTGAATCACTAGGAGGAGGAGAGGGCAAGGGTGGTTTTTATTCTAATCTCATTTTATGTGAAATAGGTCAATCTCGCCAAGGGGACGCGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCACCATATGATTCAAGGGGGTGCAGTTATAGCCGGAGCAGGAGTCATAGCTACAGCCGAAGCTATTGTAGGTGAGTAAAAATATTTCAAGTTTTAAGAAGCCAGCTAATTTTTCTAAAAACCCAGAAACTAATGATGTTAAAAATGCTTGGAATTTGGATTGGGGAAGCCTGCATATGATTTAGAAAATGCTTTCTCTTGGGATTTTGAAAAATGATGGAAGTCAACCCTTTAATTTAAGCCC

mRNA sequence

ATGATCGCAAAAGCTTATATGGGTCTATGCCTTCGGTGCCTCCCCACACTATTCTGTACTATACAATTGAGGGGGTGGCAACACACACAACTACGATGTTATTTTACAGACTGCTCAGTAGCGGTAGCTGTACAGGGGCTCCATTTGATTTCTCTCAGGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGTGTTATGGCAGGAGACATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCCTACAATTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCAAAAAAATGCACGTAGTACAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATCTCGCCAAGGGGACGCGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCACCATATGATTCAAGGGGGTGCAGTTATAGCCGGAGCAGGAGTCATAGCTACAGCCGAAGCTATTGTAGGTGAGTAAAAATATTTCAAGTTTTAAGAAGCCAGCTAATTTTTCTAAAAACCCAGAAACTAATGATGTTAAAAATGCTTGGAATTTGGATTGGGGAAGCCTGCATATGATTTAGAAAATGCTTTCTCTTGGGATTTTGAAAAATGATGGAAGTCAACCCTTTAATTTAAGCCC

Coding sequence (CDS)

ATGATCGCAAAAGCTTATATGGGTCTATGCCTTCGGTGCCTCCCCACACTATTCTGTACTATACAATTGAGGGGGTGGCAACACACACAACTACGATGTTATTTTACAGACTGCTCAGTAGCGGTAGCTGTACAGGGGCTCCATTTGATTTCTCTCAGGAAATTGAAAATGAGAGGTAGAAGTTATAGTCCATCACCACCAAGGTGTTATGGCAGGAGACATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCCTACAATTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTCCAGTTTGTTGATCCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCAAAAAAATGCACGTAGTACAGAGTATTATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATCTCGCCAAGGGGACGCGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCACCATATGATTCAAGGGGGTGCAGTTATAGCCGGAGCAGGAGTCATAGCTACAGCCGAAGCTATTGTAGGTGAGTAA

Protein sequence

MIAKAYMGLCLRCLPTLFCTIQLRGWQHTQLRCYFTDCSVAVAVQGLHLISLRKLKMRGRSYSPSPPRCYGRRHRSPSPRGRGGRSRYLPTILLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRSISPRGRGGTGSNPTQGHHHMIQGGAVIAGAGVIATAEAIVGE

Homology

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BLAST of CmoCh14G003950 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.8e-57
Identity = 118/179 (65.92%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 57  MRGRSYSPSPPRCYGRRHRSPSPRGR-GGRSRYLPTILLVRNLRHDCRPEDVHGLFGRFG 116
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR LPT LLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 117 PLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEENRKRPE 176
           P+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+ +DG +LLGRELTVVFAEENRK+P 
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 177 EMRARDSSRGWSYSYKRSPLRY-----SQSPHYGQKNARSTEYYSPARCRRYSRSISPR 227
           EMRAR+   G     +R+P RY     S  P  G+  +RS +YYSP   R + RSISPR
Sbjct: 121 EMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPR 179

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BLAST of CmoCh14G003950 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.7e-52
Identity = 116/183 (63.39%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 57  MRGRSYSPSPPRCYGRRHRSPSPRGR--GGRSRYLPTILLVRNLRHDCRPEDVHGLFGRF 116
           MRGRSY+PSPPR YGRR RSPSPRGR  G R   LPT LLVRNLRHDCR ED+   F +F
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 117 GPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYELDGQVLLGRELTVVFAEENRKRP 176
           GP+KDIYLPRDYY+G+PRGF F+QF+DPAD   AK+++DG +LLGRELTVVFAEENRK+P
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 177 EEMRARDSSRGWSYSY---KRSPLRYSQS--PHYGQKN-ARSTEYYSPARCRRYSRSISP 229
            EMR RD   G S  +   +RSP RYS+S  P  G+++ +RS  Y SP   R  SRS+SP
Sbjct: 121 TEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSP 180

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BLAST of CmoCh14G003950 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-28
Identity = 88/190 (46.32%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 60  RSYSP---SPP-RCYGRRHRSPSP----------RGRGGRSRYLPTILLVRNLRHDCRPE 119
           R YSP   SPP R YG R RSP P           G GGR       LLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 120 DVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYELDGQVLLGRELTVV 179
           ++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D   A+  ++ +   GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 180 FAEENRKRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRS 231
            A E+RKRPEEMR +  +R    S  R    + +S       +RS    S +R R  SRS
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRD-RSHGRSRSRSISRSRSPRRPSDSRSRYRSRS 181

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BLAST of CmoCh14G003950 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-27
Identity = 90/203 (44.33%), Postives = 112/203 (55.17%), Query Frame = 0


Query: 52  LRKLKMRGRSYSPSPPRCYGRRHRSPSPRGRGG----RSRYLPTI----------LLVRN 111
           + + + R RSYSP P      R RSP PR R G    R R  P+           LL+RN
Sbjct: 1   MARARSRSRSYSPRP------RDRSP-PRERKGYDDNRLRERPSSRDHESSGPSGLLIRN 60

Query: 112 LRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQF---VDPADAKYELDGQVL 171
           L  D RP D+   F RFGPLKDIYLPR+YY+GEPRGF FV++    D A+A   ++ +V+
Sbjct: 61  LPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVI 120

Query: 172 LGRELTVVFAEENRKRPEEMRARDSSRGWSYSYK----RSPLR------YSQSP---HYG 225
            GRE+ +VFAEENRK P+EMR  + + G    YK    RSP R       S+SP      
Sbjct: 121 GGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESR 180

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BLAST of CmoCh14G003950 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 86  SRYL---PTILLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP 145
           SRYL    T L VRN+  D R ED+   FGR+GP+ D+Y+P D+Y+  PRGF +VQF D 
Sbjct: 2   SRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDV 61

Query: 146 ADAK---YELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRGWSYSYKRSPLRY--SQS 205
            DA+   + LD + + GR++ + FA+ +RK P +M+A++    +S S      RY  S+S
Sbjct: 62  RDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRS 121

Query: 206 PHYGQKNARSTEYYSPARCRRYSRSISPRGRGGTGSNPTQGHHH 242
             Y ++ +RS  +        Y RS SPR    TG  P +   H
Sbjct: 122 RSYERRRSRSRSF-----DYNYRRSYSPRNSRPTG-RPRRSRSH 159

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BLAST of CmoCh14G003950 vs. ExPASy TrEMBL
Match: A0A6J1DCY5 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3673 GN=LOC111019338 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 7.9e-77
Identity = 151/177 (85.31%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 57  MRGR--SYSPSPPRCYGRRHRSPSPRGRGGRSRYLPTILLVRNLRHDCRPEDVHGLFGRF 116
           MRGR  SYSPSPPR YGRRHRSPSPR RGGR R LPT LLVRNLRHDCRPED+ GLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 117 GPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYELDGQVLLGRELTVVFAEENRKRP 176
           GPLKDIYLPRDYYSGEPRGF FVQFVDPA   DAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 177 EEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRSISPRGR 229
           EEMRARDSSRG SY+Y+RSPLRYS+SPHY +K +RS EYYSPA+  RYSRSISPR R
Sbjct: 121 EEMRARDSSRGRSYNYRRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDR 177

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BLAST of CmoCh14G003950 vs. ExPASy TrEMBL
Match: A0A6J1L3A1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.5e-75
Identity = 148/179 (82.68%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 53  RKLKMRGR--SYSPSPPRCYGRRHRSPSPRGRGGRSRYLPTILLVRNLRHDCRPEDVHGL 112
           +KLKMRGR  SYSPSPPR YGRR+RS SPRG GGR R LPT LLVRNLRHDCRPED+ GL
Sbjct: 7   KKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGL 66

Query: 113 FGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEEN 172
           FG+FGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYELDGQVLLGRELTVVFAEEN
Sbjct: 67  FGQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEEN 126

Query: 173 RKRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRSISPR 227
           RKRPE+MRARDSSRG SYSY+RSPL+YSQSP +G+K +RS EYYSPAR RRYSRSISPR
Sbjct: 127 RKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPR 185

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BLAST of CmoCh14G003950 vs. ExPASy TrEMBL
Match: A0A6J1L0E4 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.6e-75
Identity = 148/178 (83.15%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 54  KLKMRGR--SYSPSPPRCYGRRHRSPSPRGRGGRSRYLPTILLVRNLRHDCRPEDVHGLF 113
           KLKMRGR  SYSPSPPR YGRR+RS SPRG GGR R LPT LLVRNLRHDCRPED+ GLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 114 GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEENR 173
           G+FGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYELDGQVLLGRELTVVFAEENR
Sbjct: 62  GQFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 174 KRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRSISPR 227
           KRPE+MRARDSSRG SYSY+RSPL+YSQSP +G+K +RS EYYSPAR RRYSRSISPR
Sbjct: 122 KRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPR 179

[Close]

BLAST of CmoCh14G003950 vs. ExPASy TrEMBL
Match: A0A6J1G9Y3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 4.8e-74
Identity = 147/181 (81.22%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 53  RKLKMRGR--SYSPSPPRCYGRRHRSPSPRGRGGRSRYLPTILLVRNLRHDCRPEDVHGL 112
           +KLKMRGR  SYSPSPPR YGRR+RS SPRG GGR R LPT LLVRNLRHDCRPED+ GL
Sbjct: 7   KKLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGL 66

Query: 113 FGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEEN 172
           FGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYELDGQVLLGRELTVVFAEEN
Sbjct: 67  FGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEEN 126

Query: 173 RKRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRSISPRG 229
           RKRPE+MRARDSS G SYSY+RSPL+YSQSP +G+K + S EYYSPAR  RYSRSISPR 
Sbjct: 127 RKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRD 186

[Close]

BLAST of CmoCh14G003950 vs. ExPASy TrEMBL
Match: A0A6J1G9D2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 8.2e-74
Identity = 147/180 (81.67%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 54  KLKMRGR--SYSPSPPRCYGRRHRSPSPRGRGGRSRYLPTILLVRNLRHDCRPEDVHGLF 113
           KLKMRGR  SYSPSPPR YGRR+RS SPRG GGR R LPT LLVRNLRHDCRPED+ GLF
Sbjct: 2   KLKMRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLF 61

Query: 114 GRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEENR 173
           GRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYELDGQVLLGRELTVVFAEENR
Sbjct: 62  GRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENR 121

Query: 174 KRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRSISPRGR 229
           KRPE+MRARDSS G SYSY+RSPL+YSQSP +G+K + S EYYSPAR  RYSRSISPR R
Sbjct: 122 KRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDR 181

[Close]

BLAST of CmoCh14G003950 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 221.9 bits (564), Expect = 6.2e-58
Identity = 118/179 (65.92%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 57  MRGRSYSPSPPRCYGRRHRSPSPRGR-GGRSRYLPTILLVRNLRHDCRPEDVHGLFGRFG 116
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR LPT LLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 117 PLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEENRKRPE 176
           P+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+ +DG +LLGRELTVVFAEENRK+P 
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 177 EMRARDSSRGWSYSYKRSPLRY-----SQSPHYGQKNARSTEYYSPARCRRYSRSISPR 227
           EMRAR+   G     +R+P RY     S  P  G+  +RS +YYSP   R + RSISPR
Sbjct: 121 EMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPR 179

[Close]

BLAST of CmoCh14G003950 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 221.9 bits (564), Expect = 6.2e-58
Identity = 118/179 (65.92%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 57  MRGRSYSPSPPRCYGRRHRSPSPRGR-GGRSRYLPTILLVRNLRHDCRPEDVHGLFGRFG 116
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR LPT LLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 117 PLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYELDGQVLLGRELTVVFAEENRKRPE 176
           P+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+ +DG +LLGRELTVVFAEENRK+P 
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 177 EMRARDSSRGWSYSYKRSPLRY-----SQSPHYGQKNARSTEYYSPARCRRYSRSISPR 227
           EMRAR+   G     +R+P RY     S  P  G+  +RS +YYSP   R + RSISPR
Sbjct: 121 EMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPR 179

[Close]

BLAST of CmoCh14G003950 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-54
Identity = 118/192 (61.46%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 57  MRGRSYSPSPPRCYGRRHRSPSPRGR-GGRSRYLPTILLVRNLRHDCRPEDVHGLFGRFG 116
           MRGRSY+PSPPR YGRR RSPSPRGR GGRSR LPT LLVRNLRHDCR ED+   F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 117 PLKDIYLPRDYYSG------------EPRGFRFVQFVDP---ADAKYELDGQVLLGRELT 176
           P+KDIYLPRDYY+G            +PRGF FVQF+DP   ADAK+ +DG +LLGRELT
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 120

Query: 177 VVFAEENRKRPEEMRARDSSRGWSY-SYKRSPLRY-----SQSPHYGQKNARSTEYYSPA 227
           VVFAEENRK+P EMRAR+   G  +   +R+P RY     S  P  G+  +RS +YYSP 
Sbjct: 121 VVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPP 180

[Close]

BLAST of CmoCh14G003950 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-53
Identity = 116/183 (63.39%), Postives = 138/183 (75.41%), Query Frame = 0


Query: 57  MRGRSYSPSPPRCYGRRHRSPSPRGR--GGRSRYLPTILLVRNLRHDCRPEDVHGLFGRF 116
           MRGRSY+PSPPR YGRR RSPSPRGR  G R   LPT LLVRNLRHDCR ED+   F +F
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 117 GPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYELDGQVLLGRELTVVFAEENRKRP 176
           GP+KDIYLPRDYY+G+PRGF F+QF+DPAD   AK+++DG +LLGRELTVVFAEENRK+P
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 177 EEMRARDSSRGWSYSY---KRSPLRYSQS--PHYGQKN-ARSTEYYSPARCRRYSRSISP 229
            EMR RD   G S  +   +RSP RYS+S  P  G+++ +RS  Y SP   R  SRS+SP
Sbjct: 121 TEMRTRDRG-GRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSP 180

[Close]

BLAST of CmoCh14G003950 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 128.6 bits (322), Expect = 7.2e-30
Identity = 88/190 (46.32%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 60  RSYSP---SPP-RCYGRRHRSPSP----------RGRGGRSRYLPTILLVRNLRHDCRPE 119
           R YSP   SPP R YG R RSP P           G GGR       LLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 120 DVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYELDGQVLLGRELTVV 179
           ++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D   A+  ++ +   GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 180 FAEENRKRPEEMRARDSSRGWSYSYKRSPLRYSQSPHYGQKNARSTEYYSPARCRRYSRS 231
            A E+RKRPEEMR +  +R    S  R    + +S       +RS    S +R R  SRS
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRD-RSHGRSRSRSISRSRSPRRPSDSRSRYRSRS 181

The following BLAST results are available for this feature:

BLAST of CmoCh14G003950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	8.8e-57	65.92	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	1.7e-52	63.39	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	1.0e-28	46.32	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	5.6e-27	44.33	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	1.1e-19	38.41	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of CmoCh14G003950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCY5	7.9e-77	85.31	serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3...	[more]
A0A6J1L3A1	1.5e-75	82.68	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita max...	[more]
A0A6J1L0E4	2.6e-75	83.15	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max...	[more]
A0A6J1G9Y3	4.8e-74	81.22	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita mos...	[more]
A0A6J1G9D2	8.2e-74	81.67	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita mos...	[more]

BLAST of CmoCh14G003950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	6.2e-58	65.92	SC35-like splicing factor 33	[more]
AT1G55310.2	6.2e-58	65.92	SC35-like splicing factor 33	[more]
AT1G55310.3	1.4e-54	61.46	SC35-like splicing factor 33	[more]
AT3G13570.1	1.2e-53	63.39	SC35-like splicing factor 30A	[more]
AT3G55460.1	7.2e-30	46.32	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 92..162 e-value: 1.5E-14 score: 64.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 93..159 e-value: 5.1E-12 score: 45.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 91..166 score: 15.630307
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 88..244 e-value: 6.8E-20 score: 73.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..86
None	No IPR available	PANTHER	PTHR23147:SF149	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 57..228
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 57..228
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 91..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G003950.1	CmoCh14G003950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding