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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. TTCACTCACAACCCATTTAGCCCACTTCACAATTTCCTTCCCAGTTGAATGATGTTCAGCAATGGCGCCGCCTCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGGTTTGTGCGCGAGTCCCTGTTTTCTTCAATTCAATCGATCATACTTTCTGGTCGAAATGAAATGGTTGAGTTTCTTTTGTGGTTAATTTGATCTCTTGATTTGACTTTGCAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGAGGAGCAATATCCCCCACAGGTCATTCGGCTTCTGTTCATTCATTCCAAAATCCTGTAATTGATTTCCTTACAATATCTTGCCCTAAATATTTATCTGAAATTTCCTTGGATACGTAGCATTGTTGGTTAAATTAAGTTAGGGCAATCTCTGCCTGTTCTATTATGGAAACTTGGAAGGATTAATTTGAAGCGACTTCTGTAATATTGTCAGCTTATTTAAATATCTGCTGTATTTTCGATTGATTCATTTTACCTTGAAATCTGCTTTGATATTGTGAAAGAATAGCTATAGTTAATGATCTAAGTGATTTGAGGAATTTGGACCCTCCCTTTCTTGAGATCACTCGAGCTCTAAACCAACTAAATCAATGCCTTACTAACCTTCTTTCCCACTCTCTCTATCTATAACCAAAATCCCTAGATTCCTTCTAATTCATTGTTGGGTAGGCAAAAGAATAGCAATTGTTCTGTTCTGTGTTCCTTTTTCATTCACGTTTGTGGGGCTGAGGGAGGAAAGAGACAGATTATAGCTATCAATTGAATGTGTTGCCTTGAAGACAAATAGCTATCCGTTTGCTGCTCTTCTCATTTGCTAAATATGTTTCTCCTTTTCTGGTCCTCGACCGGGATTGACTCGACTTAACTCGACTCGACTCTTTTGAGCAAATATTTTATTGACTGTGCTTGTTCTCTTCATGTGCAAAACCTGATACGATGTGAGATCCTACATTAGTTGGAGAAAAGAACGAAACATTCCTTATAAGGGTGTGGAAACCCCTCCCTATTTTAAAACCTTGAAGGGAAACCCATAAGGAAAAATCCAAAGAGGACAATATCTGCTAGCGGTGTGTGTAGGTTGTTACAAATGGTATCAGCCAAATACCGAACAATGTGCTAGCAAGGACGCTGAGCCTCGAAAGGGGTGGATTGTGAGATCCCACGTTGGTTGGGGAGGAGAACGAAACATTCATTATAAAGATGTGAAAATCTCTCCCTATCAAATGCCTTTTAAAATCTTAAGGGGAAGCCCATAAAGAAAAACCAGAGAGGACAATATCTACTACATATGTGAATATGTGGCTTTGTTTTTTATTTTCTTTATTCTTTTCTGAGGATATGTGAATGAAAATGATACTACGTTGAATACAGAATAGAAGAAGTAGATAAAACGTTCACATATAGAAGAAATGTGATGCAGGGAAACACGAGGGACCAAAACGTGATCCTCTCGTGCTCGTGTAGCCAATCAAGTGAGAAGAAAAATGAAGTGGATATACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTCTAACAGGTGAGTCTCTTTGTTGTTTGGAAGTGTAGGATTGATCAACACAATTGCTTCTTCCTCACCTTCTGTTCATCATTTTGCAGTTTGCAAACACAGAGCTCTAGTTTTGATCTGATTTGATTGCATTTGTCGGGTTTGTCACGGATCTTTCAGGTTTGTTTGCAAATAAGTCCTTAAACTTTTCAAACTTTCTAATAAGTCCTTCAACCTTATTACTAAATTGTCCTCTTGAATTTTTTTT mRNA sequence TTCACTCACAACCCATTTAGCCCACTTCACAATTTCCTTCCCAGTTGAATGATGTTCAGCAATGGCGCCGCCTCCGTCTCTTGCTGTAATGGCGACTGGCGATGAATCAAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGAGGAGCAATATCCCCCACAGGGAAACACGAGGGACCAAAACGTGATCCTCTCGTGCTCGTGTAGCCAATCAAGTGAGAAGAAAAATGAAGTGGATATACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTCTAACAGTTTGCAAACACAGAGCTCTAGTTTTGATCTGATTTGATTGCATTTGTCGGGTTTGTCACGGATCTTTCAGGTTTGTTTGCAAATAAGTCCTTAAACTTTTCAAACTTTCTAATAAGTCCTTCAACCTTATTACTAAATTGTCCTCTTGAATTTTTTTT Coding sequence (CDS) ATGAATCAAGCCAAATGCGACTTTAGCAGAAATTGTGCCATTGATCCAGAACGAAATGAGGAGCAATATCCCCCACAGGGAAACACGAGGGACCAAAACGTGATCCTCTCGTGCTCGTGTAGCCAATCAAGTGAGAAGAAAAATGAAGTGGATATACTCAAAGGAGGTTCTGTTCTGCTGATTTGGGTATTTGAATTCATTGGCACTACTTTCTCCACTTCTAACAGTTTGCAAACACAGAGCTCTAGTTTTGATCTGATTTGA Protein sequence MNQAKCDFSRNCAIDPERNEEQYPPQGNTRDQNVILSCSCSQSSEKKNEVDILKGGSVLLIWVFEFIGTTFSTSNSLQTQSSSFDLI
Homology
BLAST of CmoCh13G000520 vs. NCBI nr
Match: KAG6583359.1 (hypothetical protein SDJN03_19291, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37 Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0 Query: 1 MNQAKCDFSRNCAIDPERNEEQYPPQGNTRDQNVILSCSCSQSSEKKNEVDILKGGSVLL 60 MNQAKCDFSRNCAIDPERN EQYP QGNTRDQ+VILSCSC+QSSEKKNEVD+LKGGSVLL Sbjct: 1 MNQAKCDFSRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLL 60
Query: 61 IWVFEFIGTTFSTSNSLQTQSSSFDLI 88 IWVFEFIGTTFST NS QTQSSSFDLI Sbjct: 61 IWVFEFIGTTFSTFNSFQTQSSSFDLI 87
BLAST of CmoCh13G000520 vs. NCBI nr
Match: KAG7019130.1 (hypothetical protein SDJN02_18088 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 147.9 bits (372), Expect = 4.1e-32 Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0 Query: 7 DFSRNCAIDPERNEEQYPPQGNTRDQNVILSCSCSQSSEKKNEVDILKGGSVLLIWVFEF 66 D SRNCAIDPERN EQYP QGNTRDQ+VILSCSC+QSSEKKNEVD+LKGGSVLLIWVFEF Sbjct: 14 DESRNCAIDPERNVEQYPQQGNTRDQHVILSCSCTQSSEKKNEVDVLKGGSVLLIWVFEF 73
Query: 67 IGTTFSTSNSLQTQSSSFDLI 88 IGTTFST NS QTQSSSFDLI Sbjct: 74 IGTTFSTFNSFQTQSSSFDLI 94
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6583359.1 | 4.2e-37 | 91.95 | hypothetical protein SDJN03_19291, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7019130.1 | 4.1e-32 | 90.12 | hypothetical protein SDJN02_18088 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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