CmoCh04G027060 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCAAAGAAACTGTAATCAGAAGTATTCATGATCTGGATTATCCGCACGGGGTGCACCATAATACTGTACGCCTCACCGCACCCAATACCCAACTCTTCCACGTTACGATCTTCGAAGCTCGAGCCAAGACCCACCTCCTCTGTAACCCAAAAGTCTCCCGCGAAGCAAAACAGTCCATTTTTAGCACACAACTCCGATCACCGTCGTCCACGGTCTATTTCAACGGTCACTATCCACCGTCTCTGCATATGAGTACTCCAGCAGTACCGGGGGTAAGCTCCGTTACAATTGTTTGTTTTAATCTTCTCCAAATTGGCGGTCGATCAGTCGCATTCAGATCTCGCAGTTCGTCTTTTCTATCTCGGAACGTGTATGCTAGATCTTGACATTTTATCGAAATTCGGCGACGTTTCTAATGATGTTTTGTTGTTTTGTGTAATTCGTTTTGTAATTGGATAGGGGCCTGGCTTGTTTACTGGATTCACGAAGCTATGCAAGGGCTTAGCTGTGGTGCTGGTTGGCGGGCATATCTTGGTTCAGGTTTTTCCTGCGGTTGTTAGTTATCTCGCTCTTATTCCAGCCAGGTATCTTGTTTGGAGAACTTAGTCTTTGGATTAGTGGTAGTGATAACCGTGCAAAGCTGATGCGTTCGTTCTTGCAGTAATGCCTGTAGGTTACGGGTTAGAAATGTCTTTGTTTTCTCGAGTCGAAATTTAGTCAGGAAAAAATCAAGAATCTTGTGATCACAGATGAAAATTTATTGAATTCTTGTATCTGCTAGGATTTCAGGTGGGCAGGTATATGTTACATGTTTTGAAATGATCATAGTGATCCAGAGGCTTGTCTTGTGTCCTGTGGGATTGATGGAAGTTAGTCAATAGTTTAGTTTCCATCCATGGAAATTTGGTCGTAATTGTAAAATGCAATGACTCTGTTGATTCCTCTATTCAATTTATTGGCCATAACATCCAAGTAGCGGTTTACCCTTCTTCAGATAAAACGTTTATGTTGATAAGAAGTTGCAACAAACTTTTTGAGAGGCTACTGTTGTGGATTATTGAAAGAAGTAGTCCAACGCTGGCTAATTAGGAGGAAGATCATGGGTTTATAAGTAAGGAACACTATCTCCATTGATATGAGGCCTTTTGGAGAAACTAAAAGAAAAGTCATGAGAGCTTATGCTCAAAGTGAACAATATCATATCATTGTAGAGAGTCGTGGTTCCCAACAGCTACATGATCTACTGCTTTAGGATTCCAAGGGTTATGTTCCAGAGGCCTAAGTTTACTGCTTTGATGTCTAGAACTCTTTCATTTTTTTAATCTGATGTTTTCACTGCTACACAATCTGAATTATTAACACGAGTGTGAAATGTGAATCCCTTATTATTCTGAATTGGCTTTAGTTATTTAACTACAATATTTTAGTTTCCTGATAGGAAGAAAGATTATTAATAAGAGTAGAAATGTAGAGAATGATATCCTCTGCACTAGAGTATATCATTTTATATATAAATGATCCGAGTAAAAGTATGCAAAAATGATCCCACAGTCTAAATGTTTACACTCCTGGGCCTGCAAGAGGTAAAATATAAACATCTTTTTCAGAAAACTTCTCCATCTGAGTATTTTTGTTAGCAAGTCTTCCGTTCTAACTCGACTACTCAATGAAGAGCTGAAACTGCAATATGACCTCAATCTTTTACTAGCCATCTTCTGATAACCCATAATTTACTACAAAAATCAAAATGGAGAAATATATCATTTACCAAAGAGGTGAAGGGCCATTAATTTAGGGAAAACAAGGATGACTGATGCAATGGTATTATAGATATGAAAGCTCGATCAACTGCAAATCATGAGTCATTGTCATTCTATTGGATCATCTATTCATCAAAATACCAAAATTGTCATTATCTTTCAGTATTCTATCGATGTTTTTCACTGCTTATATATAGAATTATCAAGCTAAGACCATATTGAATCTCTCACTCTCAACTACAACAATAAAACTATTGATCAAAATGTAGAAATTTGTGCCCAGTTTAATTCATTATTTTATTTTATTTGTGTGATGTGGGAATATTTCCTCTGTAGTGTAGGAATCGATTAAATTCAGGGAAGGCAGGTATCTGACCGAGTTTTGAGTAGTTAAATTTACATGGAAAATGTGTAAACAATAAATGGTTGGGTCATTCATTCCTTTGAACTTCTATTTTGTAGGACTATTCCTTTTGCTTGGAATCTCATAACTGCTGGTTATGTTGAACAGACAGTATATGGGGTATGCACTCACGTTGTCATACACTATTTTGTTTCCCTTTACAGAATCATAATTTGAACATATCTCACTATTTTTTGTTCAATCTTCACTGGAAGTTAGACTCACTGAGAGCCATATATTGCAGGTTATTGTCAGCACAGTTGGTCTCCTTTTTGTTGGGAAGCTGCTTGAACCCATCTGGGGCTCTAGAGAATTTTTGAAATTCATCTTTGTAGTCAATTTTATAACTTCTTTATGTGTCTTTATCACAGCAATTGCCCTATACTATATTACACAGGAGGAAAGTTATCTGTAAGTGCTACCGAGTCCTCGTGCATCAAAGGCTCTTTTTAGGCATACTCGTGTACATGTCTTTAGCTGATAGCGCATTATGGATTTTCATTTAAGCCATTTTTTGTCCGATTCATTCCATATAAGTATTTTACAGTCTCCCTTTATCAACTCCTCTTTAAACATGTTTCATTTTACGCCTCTCGGTCTTTCCATACATCTTGTTTACATATTTTTTTTCGGTCTCAGTTATCTGCCTGTATCTGGTTTCTATGGGATTCTAGCTGGGTTCTTGGTTGGGATCAAACAAATCATACCTGATCAAGAGTTGCCATTATTGAAACTGAGAACTAAGGTATGAAAAATGTAGATAGCCATTTCCAAATTTTGAATGGTTTTTATCAGAGTTTTTCTTGAACGCTCTTTTGGGCTTTGCTTGAAACTTCATGCAGTGGTTGCCATCTCTTGCTGTATTAGTATCCATTGCTGTAAGCTGTTGGACAACAGGGGCAGCAACGTATCTTCCAACAATAATATTTGGAACATACATCAGCTGGATTTATCTGAGATACTGGCAGAGGAAACCTGAAACAAAACTGAAAGGCGATCCTAGTGATGATTTTGCATTCTCTTCATTCTTCCCTGAACTCCTACGGTATTCTGTTTATCTAGAAGTTCCTTTTTCTACCTTTTAAGCTTCTCTTGCCGATGTTTTCAGGAATATTCTGTGTTCTTTCTCTCCATAGTCCATAGCGTACTATGACTCTTGATGTTCCTGTGCAGGCCAGTCATTGATCCAGTTGCATCAATATTTCATCGTCTGCTTTGTGGAAGATCTGAATCCTCTAACGATTCCGAGGACTATACTGCTGCAGGTGCCCCGCTGCCCGGTTCAGATCCCATTGAGGCATCTCGACGGAGGTAATATTTGCTAATATTTTTCTTCTGACTCATAAGGTTAAGTGTAAAGAATAGTAAAGATTGAAAATTCTACTGGTTGCAGAGAAAGGGGAGCAAGAGCTTTGGAAGAAAGACTGGCAGCTGAGAGATTGGCTGCAGCCAGAAGTGGTCAAGAGTCGGGAAGAGATGCAACAGAGAATGTTTGATAATATAATCCTATATAAGTTGGCGTTCATCTGATGATCAACTACTTGGGGGGGACTGTGCAGTATATCAAGAGGTCCTCTTTTCTTTATTCTGTTATGCAATTTTGCTTTGCACATTCCTTCTGAGTTGCAAAAATGTTGCTTCATTTATGCCCTTTGCAGCATTATTGTGGATTTATTTGTATACAGCCCAAGATATATAGAGTACAATTTCCTCCCAAGTTTCTCCCACTTTTATTTATCTATTTATTAGGACTAAAATACATTTTTTATCGTTGAAAAGTTTCTATTTCGCCTTAAA ATGGTCAAAGAAACTGTAATCAGAAGTATTCATGATCTGGATTATCCGCACGGGGTGCACCATAATACTGTACGCCTCACCGCACCCAATACCCAACTCTTCCACGTTACGATCTTCGAAGCTCGAGCCAAGACCCACCTCCTCTGTAACCCAAAAGTCTCCCGCGAAGCAAAACAGTCCATTTTTAGCACACAACTCCGATCACCGTCGTCCACGGTCTATTTCAACGGTCACTATCCACCGTCTCTGCATATGAGTACTCCAGCAGTACCGGGGGGGCCTGGCTTGTTTACTGGATTCACGAAGCTATGCAAGGGCTTAGCTGTGGTGCTGGTTGGCGGGCATATCTTGGTTCAGGTTTTTCCTGCGGTTGTTAGTTATCTCGCTCTTATTCCAGCCAGGACTATTCCTTTTGCTTGGAATCTCATAACTGCTGGTTATGTTGAACAGACAGTATATGGGGTTATTGTCAGCACAGTTGGTCTCCTTTTTGTTGGGAAGCTGCTTGAACCCATCTGGGGCTCTAGAGAATTTTTGAAATTCATCTTTGTAGTCAATTTTATAACTTCTTTATGTGTCTTTATCACAGCAATTGCCCTATACTATATTACACAGGAGGAAAGTTATCTTTATCTGCCTGTATCTGGTTTCTATGGGATTCTAGCTGGGTTCTTGGTTGGGATCAAACAAATCATACCTGATCAAGAGTTGCCATTATTGAAACTGAGAACTAAGTGGTTGCCATCTCTTGCTGTATTAGTATCCATTGCTGTAAGCTGTTGGACAACAGGGGCAGCAACGTATCTTCCAACAATAATATTTGGAACATACATCAGCTGGATTTATCTGAGATACTGGCAGAGGAAACCTGAAACAAAACTGAAAGGCGATCCTAGTGATGATTTTGCATTCTCTTCATTCTTCCCTGAACTCCTACGGCCAGTCATTGATCCAGTTGCATCAATATTTCATCGTCTGCTTTGTGGAAGATCTGAATCCTCTAACGATTCCGAGGACTATACTGCTGCAGGTGCCCCGCTGCCCGGTTCAGATCCCATTGAGGCATCTCGACGGAGAGAAAGGGGAGCAAGAGCTTTGGAAGAAAGACTGGCAGCTGAGAGATTGGCTGCAGCCAGAAGTGGTCAAGAGTCGGGAAGAGATGCAACAGAGAATGTTTGATAATATAATCCTATATAAGTTGGCGTTCATCTGATGATCAACTACTTGGGGGGGACTGTGCAGTATATCAAGAGGTCCTCTTTTCTTTATTCTGTTATGCAATTTTGCTTTGCACATTCCTTCTGAGTTGCAAAAATGTTGCTTCATTTATGCCCTTTGCAGCATTATTGTGGATTTATTTGTATACAGCCCAAGATATATAGAGTACAATTTCCTCCCAAGTTTCTCCCACTTTTATTTATCTATTTATTAGGACTAAAATACATTTTTTATCGTTGAAAAGTTTCTATTTCGCCTTAAA ATGGTCAAAGAAACTGTAATCAGAAGTATTCATGATCTGGATTATCCGCACGGGGTGCACCATAATACTGTACGCCTCACCGCACCCAATACCCAACTCTTCCACGTTACGATCTTCGAAGCTCGAGCCAAGACCCACCTCCTCTGTAACCCAAAAGTCTCCCGCGAAGCAAAACAGTCCATTTTTAGCACACAACTCCGATCACCGTCGTCCACGGTCTATTTCAACGGTCACTATCCACCGTCTCTGCATATGAGTACTCCAGCAGTACCGGGGGGGCCTGGCTTGTTTACTGGATTCACGAAGCTATGCAAGGGCTTAGCTGTGGTGCTGGTTGGCGGGCATATCTTGGTTCAGGTTTTTCCTGCGGTTGTTAGTTATCTCGCTCTTATTCCAGCCAGGACTATTCCTTTTGCTTGGAATCTCATAACTGCTGGTTATGTTGAACAGACAGTATATGGGGTTATTGTCAGCACAGTTGGTCTCCTTTTTGTTGGGAAGCTGCTTGAACCCATCTGGGGCTCTAGAGAATTTTTGAAATTCATCTTTGTAGTCAATTTTATAACTTCTTTATGTGTCTTTATCACAGCAATTGCCCTATACTATATTACACAGGAGGAAAGTTATCTTTATCTGCCTGTATCTGGTTTCTATGGGATTCTAGCTGGGTTCTTGGTTGGGATCAAACAAATCATACCTGATCAAGAGTTGCCATTATTGAAACTGAGAACTAAGTGGTTGCCATCTCTTGCTGTATTAGTATCCATTGCTGTAAGCTGTTGGACAACAGGGGCAGCAACGTATCTTCCAACAATAATATTTGGAACATACATCAGCTGGATTTATCTGAGATACTGGCAGAGGAAACCTGAAACAAAACTGAAAGGCGATCCTAGTGATGATTTTGCATTCTCTTCATTCTTCCCTGAACTCCTACGGCCAGTCATTGATCCAGTTGCATCAATATTTCATCGTCTGCTTTGTGGAAGATCTGAATCCTCTAACGATTCCGAGGACTATACTGCTGCAGGTGCCCCGCTGCCCGGTTCAGATCCCATTGAGGCATCTCGACGGAGAGAAAGGGGAGCAAGAGCTTTGGAAGAAAGACTGGCAGCTGAGAGATTGGCTGCAGCCAGAAGTGGTCAAGAGTCGGGAAGAGATGCAACAGAGAATGTTTGA MVKETVIRSIHDLDYPHGVHHNTVRLTAPNTQLFHVTIFEARAKTHLLCNPKVSREAKQSIFSTQLRSPSSTVYFNGHYPPSLHMSTPAVPGGPGLFTGFTKLCKGLAVVLVGGHILVQVFPAVVSYLALIPARTIPFAWNLITAGYVEQTVYGVIVSTVGLLFVGKLLEPIWGSREFLKFIFVVNFITSLCVFITAIALYYITQEESYLYLPVSGFYGILAGFLVGIKQIIPDQELPLLKLRTKWLPSLAVLVSIAVSCWTTGAATYLPTIIFGTYISWIYLRYWQRKPETKLKGDPSDDFAFSSFFPELLRPVIDPVASIFHRLLCGRSESSNDSEDYTAAGAPLPGSDPIEASRRRERGARALEERLAAERLAAARSGQESGRDATENV Homology
BLAST of CmoCh04G027060 vs. ExPASy Swiss-Prot
Match: Q8LF05 (Rhomboid-like protein 19 OS=Arabidopsis thaliana OX=3702 GN=RBL19 PE=2 SV=1) HSP 1 Score: 429.1 bits (1102), Expect = 5.4e-119 Identity = 215/308 (69.81%), Postives = 257/308 (83.44%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy Swiss-Prot
Match: Q9WUH1 (Transmembrane protein 115 OS=Mus musculus OX=10090 GN=Tmem115 PE=1 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 7.5e-28 Identity = 93/286 (32.52%), Postives = 149/286 (52.10%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy Swiss-Prot
Match: Q12893 (Transmembrane protein 115 OS=Homo sapiens OX=9606 GN=TMEM115 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.8e-27 Identity = 92/286 (32.17%), Postives = 147/286 (51.40%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy Swiss-Prot
Match: A4FUB8 (Transmembrane protein 115 OS=Bos taurus OX=9913 GN=TMEM115 PE=2 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 3.7e-27 Identity = 87/253 (34.39%), Postives = 137/253 (54.15%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy Swiss-Prot
Match: Q12239 (Transmembrane protein 115 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YOL107W PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.3e-11 Identity = 64/273 (23.44%), Postives = 123/273 (45.05%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy TrEMBL
Match: A0A6J1HJV9 (rhomboid-like protein 19 OS=Cucurbita moschata OX=3662 GN=LOC111464773 PE=4 SV=1) HSP 1 Score: 598.2 bits (1541), Expect = 2.5e-167 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy TrEMBL
Match: A0A6J1JMW3 (rhomboid-like protein 19 OS=Cucurbita maxima OX=3661 GN=LOC111487282 PE=4 SV=1) HSP 1 Score: 587.4 bits (1513), Expect = 4.4e-164 Identity = 302/308 (98.05%), Postives = 304/308 (98.70%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy TrEMBL
Match: A0A6J1C1K7 (rhomboid-like protein 19 OS=Momordica charantia OX=3673 GN=LOC111006580 PE=4 SV=1) HSP 1 Score: 560.8 bits (1444), Expect = 4.4e-156 Identity = 283/308 (91.88%), Postives = 297/308 (96.43%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy TrEMBL
Match: A0A5D3C5G3 (Rhomboid-like protein 19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00860 PE=4 SV=1) HSP 1 Score: 560.1 bits (1442), Expect = 7.5e-156 Identity = 280/308 (90.91%), Postives = 301/308 (97.73%), Query Frame = 0
BLAST of CmoCh04G027060 vs. ExPASy TrEMBL
Match: A0A1S3CPF3 (rhomboid-like protein 19 OS=Cucumis melo OX=3656 GN=LOC103503313 PE=4 SV=1) HSP 1 Score: 560.1 bits (1442), Expect = 7.5e-156 Identity = 280/308 (90.91%), Postives = 301/308 (97.73%), Query Frame = 0
BLAST of CmoCh04G027060 vs. NCBI nr
Match: XP_022964776.1 (rhomboid-like protein 19 [Cucurbita moschata]) HSP 1 Score: 598.2 bits (1541), Expect = 5.1e-167 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
BLAST of CmoCh04G027060 vs. NCBI nr
Match: XP_023552913.1 (rhomboid-like protein 19 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 597.0 bits (1538), Expect = 1.1e-166 Identity = 307/308 (99.68%), Postives = 308/308 (100.00%), Query Frame = 0
BLAST of CmoCh04G027060 vs. NCBI nr
Match: KAG6602322.1 (Rhomboid-like protein 19, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 596.3 bits (1536), Expect = 1.9e-166 Identity = 307/308 (99.68%), Postives = 307/308 (99.68%), Query Frame = 0
BLAST of CmoCh04G027060 vs. NCBI nr
Match: KAG7033005.1 (Rhomboid-like protein 19 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 594.7 bits (1532), Expect = 5.7e-166 Identity = 306/308 (99.35%), Postives = 306/308 (99.35%), Query Frame = 0
BLAST of CmoCh04G027060 vs. NCBI nr
Match: XP_022990416.1 (rhomboid-like protein 19 [Cucurbita maxima]) HSP 1 Score: 587.4 bits (1513), Expect = 9.0e-164 Identity = 302/308 (98.05%), Postives = 304/308 (98.70%), Query Frame = 0
BLAST of CmoCh04G027060 vs. TAIR 10
Match: AT3G07950.1 (rhomboid protein-related ) HSP 1 Score: 429.1 bits (1102), Expect = 3.8e-120 Identity = 215/308 (69.81%), Postives = 257/308 (83.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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