CmoCh02G017110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ninja-family protein AFP2-like
Location	Cmo_Chr02: 9809870 .. 9811883 (+)
RNA-Seq Expression	CmoCh02G017110
Synteny	CmoCh02G017110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATGGCGATGCTCTAAAAATATCTCTCTGATTATATCCTTTCGTCTTGCTTTCTTCTTCCTTCCTCCAACCCCACCGCCGTCCTTACCTCCTCCATGGCCGACACGTCACCCCTTCTCCATTCCCCGAGAATCACTCCGTCCAATCCATATAACCCAATCCCGCATTCCCACATTTGTAATCTTCTTTTTCTGCTGCGATTCTCTTCATCTTTGTTCTTCGATTTTGTGAGAAGATGAAATCTGTGGTCTTAACAGATGAAAACAACAACGACGTAGACGTCGATTTAGCGTTGTCAATCGGCGGAGTTTTTAGAACCTTACCGGAGAAATCGACGGCGTCTGGTTCTTCCTTCACGTTGTGGACTAGCGATGTAGACGAGGAGGATAGCGGAGTTACTGATGCCAAGAACAGAGGCCAGATCCGGCGACGAGAGACCAAGAGGAAACGAGACGAGGAAGACGAACGGAATCCGCCATTGAAGAGGGAGAAGAAACTTCAAGGCGTTGGATATGAATGTCGAAATGGATCTGCAGAGCTAATGCCGTATCCTTACTCGTCGTTGCAGTACGTGCCGTTTATGAATGGCTTCGTTTTCCCCTGTGTGGTGCCGTACTGGGCGGCGGCTGGCCACGGCGGTGAGAGAACCGTCCATCAGCCGGTAGCTTGCCGGAGCTTCAGGCCGTTTGAGACGGATCGAAGAGGTTCAGACGGATTTTCGAATGGAAGGAAGAACAGGAAAACTGGGTCTTGTGGATCATCCCCTGTTTGCAGTTCCTCTGTTATTTCTGATAATTACCAGAGTTCATCTCATGAAGGTGCCTGCAAATCTTGTGTTTCTCAGAATGTGTCAATCCTCGATCATTGATTTCCTTTTCATGAGTATGGTTCTTTTTTTTTCCCTCTCAGAATTGAGATTTTACTCTGTTGTTCATTTTCTATCAGGAGGTGGTAGCAGCTATACCAGAAACAATTCATGTAATTCCTCATCAGATCGACACCAAATGCGATGTCCGAACCCGAAACCGAATACGAATGGTTCTGTGAATCATGATAAACCAAAGCCTTGCAGTGAGAACGGGACACAATGTGAAGAGAAATCTGGTGAATCCCATGTCCACAAGAAAGAGCCAATCACTGCATCGAGCAACAAATCTGTTTTCAATTCCCAGAGGTCTCCTTCCATGTCAATAAAGAACATGAAGATGGAGAATGAGGAACTTCCAAAGCCTCAAATTCTAGGCCGGAATGTGCCAAGCCTTCAGCAAATGCCCTACGTTTCGACGACCGGAGTTGGTCCCAACGGCAAAACCATCACTGGATTCTTGTACAGATACTCCAACTTGGAGGTCAGTATTTTGTGCGTCTGCCATGGAGAATCCTTTTCACCGGCCGAGTTCGTCAAGCACGCCGGGGGCGAAGAAATTTCTCACCCTTTGAGACACATTAGTGTTCTTCCTACTAATGGAATACCATCTGCAATCAGATGAAAGCATTTGATCTTAGATCATAACAGCTTAACGTGTTTTTTTTATATTGAAACCTTGGGGCAGGAGAGGATCTGTAGCGAAGTACTTCAACGTCTTATTTGAGGGCTCTTTCAGGCCCCAAATCTTTTGGCTTTGTGCATATTTTTAGAACATTTTCCAAGGCATTCAGATATAGAGTTTCAACTATTACATATAGAGACTAGTTCCAATGCTAATATCATTCTAATGTTCTATTGGGGTTGAAACTATTTTTTAATCATTATCTAAGTTGTCGAAGTACCTCATATGATATTGTTCTAAACAGATAGTCACCATCACTCGAACTCATTGATGTCGATCCTCCAGAATATTAGAGCTCTAGAAAAAAGGGAATGTATCAGTATTTGATATAGTTTTCAACCTTATAACAAGAAATAAGAATTGAATTATACTCCGATTCCCACCACCATCGCTCCAATGTAAAAAGATCATTAATTTTTTCGCAAAGCTGTGATGTCATAGAGACGAATACCAAACTCATGAG

mRNA sequence

TTAATGGCGATGCTCTAAAAATATCTCTCTGATTATATCCTTTCGTCTTGCTTTCTTCTTCCTTCCTCCAACCCCACCGCCGTCCTTACCTCCTCCATGGCCGACACGTCACCCCTTCTCCATTCCCCGAGAATCACTCCGTCCAATCCATATAACCCAATCCCGCATTCCCACATTTGTAATCTTCTTTTTCTGCTGCGATTCTCTTCATCTTTGTTCTTCGATTTTGTGAGAAGATGAAATCTGTGGTCTTAACAGATGAAAACAACAACGACGTAGACGTCGATTTAGCGTTGTCAATCGGCGGAGTTTTTAGAACCTTACCGGAGAAATCGACGGCGTCTGGTTCTTCCTTCACGTTGTGGACTAGCGATGTAGACGAGGAGGATAGCGGAGTTACTGATGCCAAGAACAGAGGCCAGATCCGGCGACGAGAGACCAAGAGGAAACGAGACGAGGAAGACGAACGGAATCCGCCATTGAAGAGGGAGAAGAAACTTCAAGGCGTTGGATATGAATGTCGAAATGGATCTGCAGAGCTAATGCCGTATCCTTACTCGTCGTTGCAGTACGTGCCGTTTATGAATGGCTTCGTTTTCCCCTGTGTGGTGCCGTACTGGGCGGCGGCTGGCCACGGCGGTGAGAGAACCGTCCATCAGCCGGTAGCTTGCCGGAGCTTCAGGCCGTTTGAGACGGATCGAAGAGGTTCAGACGGATTTTCGAATGGAAGGAAGAACAGGAAAACTGGGTCTTGTGGATCATCCCCTGTTTGCAGTTCCTCTGTTATTTCTGATAATTACCAGAGTTCATCTCATGAAGGAGGTGGTAGCAGCTATACCAGAAACAATTCATGTAATTCCTCATCAGATCGACACCAAATGCGATGTCCGAACCCGAAACCGAATACGAATGGTTCTGTGAATCATGATAAACCAAAGCCTTGCAGTGAGAACGGGACACAATGTGAAGAGAAATCTGGTGAATCCCATGTCCACAAGAAAGAGCCAATCACTGCATCGAGCAACAAATCTGTTTTCAATTCCCAGAGGTCTCCTTCCATGTCAATAAAGAACATGAAGATGGAGAATGAGGAACTTCCAAAGCCTCAAATTCTAGGCCGGAATGTGCCAAGCCTTCAGCAAATGCCCTACGTTTCGACGACCGGAGTTGGTCCCAACGGCAAAACCATCACTGGATTCTTGTACAGATACTCCAACTTGGAGGTCAGTATTTTGTGCGTCTGCCATGGAGAATCCTTTTCACCGGCCGAGTTCGTCAAGCACGCCGGGGGCGAAGAAATTTCTCACCCTTTGAGACACATTAGTGTTCTTCCTACTAATGGAATACCATCTGCAATCAGATGAAAGCATTTGATCTTAGATCATAACAGCTTAACGTGTTTTTTTTATATTGAAACCTTGGGGCAGGAGAGGATCTGTAGCGAAGTACTTCAACGTCTTATTTGAGGGCTCTTTCAGGCCCCAAATCTTTTGGCTTTGTGCATATTTTTAGAACATTTTCCAAGGCATTCAGATATAGAGTTTCAACTATTACATATAGAGACTAGTTCCAATGCTAATATCATTCTAATGTTCTATTGGGGTTGAAACTATTTTTTAATCATTATCTAAGTTGTCGAAGTACCTCATATGATATTGTTCTAAACAGATAGTCACCATCACTCGAACTCATTGATGTCGATCCTCCAGAATATTAGAGCTCTAGAAAAAAGGGAATGTATCAGTATTTGATATAGTTTTCAACCTTATAACAAGAAATAAGAATTGAATTATACTCCGATTCCCACCACCATCGCTCCAATGTAAAAAGATCATTAATTTTTTCGCAAAGCTGTGATGTCATAGAGACGAATACCAAACTCATGAG

Coding sequence (CDS)

ATGAAATCTGTGGTCTTAACAGATGAAAACAACAACGACGTAGACGTCGATTTAGCGTTGTCAATCGGCGGAGTTTTTAGAACCTTACCGGAGAAATCGACGGCGTCTGGTTCTTCCTTCACGTTGTGGACTAGCGATGTAGACGAGGAGGATAGCGGAGTTACTGATGCCAAGAACAGAGGCCAGATCCGGCGACGAGAGACCAAGAGGAAACGAGACGAGGAAGACGAACGGAATCCGCCATTGAAGAGGGAGAAGAAACTTCAAGGCGTTGGATATGAATGTCGAAATGGATCTGCAGAGCTAATGCCGTATCCTTACTCGTCGTTGCAGTACGTGCCGTTTATGAATGGCTTCGTTTTCCCCTGTGTGGTGCCGTACTGGGCGGCGGCTGGCCACGGCGGTGAGAGAACCGTCCATCAGCCGGTAGCTTGCCGGAGCTTCAGGCCGTTTGAGACGGATCGAAGAGGTTCAGACGGATTTTCGAATGGAAGGAAGAACAGGAAAACTGGGTCTTGTGGATCATCCCCTGTTTGCAGTTCCTCTGTTATTTCTGATAATTACCAGAGTTCATCTCATGAAGGAGGTGGTAGCAGCTATACCAGAAACAATTCATGTAATTCCTCATCAGATCGACACCAAATGCGATGTCCGAACCCGAAACCGAATACGAATGGTTCTGTGAATCATGATAAACCAAAGCCTTGCAGTGAGAACGGGACACAATGTGAAGAGAAATCTGGTGAATCCCATGTCCACAAGAAAGAGCCAATCACTGCATCGAGCAACAAATCTGTTTTCAATTCCCAGAGGTCTCCTTCCATGTCAATAAAGAACATGAAGATGGAGAATGAGGAACTTCCAAAGCCTCAAATTCTAGGCCGGAATGTGCCAAGCCTTCAGCAAATGCCCTACGTTTCGACGACCGGAGTTGGTCCCAACGGCAAAACCATCACTGGATTCTTGTACAGATACTCCAACTTGGAGGTCAGTATTTTGTGCGTCTGCCATGGAGAATCCTTTTCACCGGCCGAGTTCGTCAAGCACGCCGGGGGCGAAGAAATTTCTCACCCTTTGAGACACATTAGTGTTCTTCCTACTAATGGAATACCATCTGCAATCAGATGA

Protein sequence

MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNRGQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECRNGSAELMPYPYSSLQYVPFMNGFVFPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSCGSSPVCSSSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKPCSENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRNVPSLQQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGEEISHPLRHISVLPTNGIPSAIR

Homology

[Close]

BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q94F39 (Ninja-family protein AFP3 OS=Arabidopsis thaliana OX=3702 GN=AFP3 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.5e-21
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 238 ENGTQCEEKSGESHVHKKE----PITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQIL 297
           E G+     SG S + + +    P+ A++NKSV  S  S     +N+  E          
Sbjct: 105 EEGSIGSSGSGSSGLSEVDTLLPPVQATTNKSVETSPSSAQSQPENLGKE---------A 164

Query: 298 GRNVPSLQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGG 357
            +N+  ++ MP+VSTTG GPNGK I GFLYRY    EV I+CVCHG   SPAEFVKHAGG
Sbjct: 165 SQNI--IEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGG 224

Query: 358 EEISHPLRHISVLPT 368
            +++HPL+HI V P+
Sbjct: 225 GDVAHPLKHIVVNPS 228

[Close]

BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q9LQ98 (Ninja-family protein AFP1 OS=Arabidopsis thaliana OX=3702 GN=AFP1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.7e-17
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 237 SENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRN 296
           SE  T+       S     +P   ++ K     +R  S+ + NMKME      PQ  G++
Sbjct: 220 SELETKASSDEARSLPSTTQPQQETTTKPTNRLRRLSSVDM-NMKME------PQGKGKS 279

Query: 297 VPSLQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGGEEI 356
                +MP V T G GPNGK + G LYRY S  EV I+CVCHG+  SPA+FVKHAGG  +
Sbjct: 280 -----EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHV 336

Query: 357 SHPLRHISV 365
            HPLRHI V
Sbjct: 340 DHPLRHIVV 336

[Close]

BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q10JI3 (Ninja-family protein Os03g0419100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0419100 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.7e-17
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 236 CSENGTQCEEKSGESHVHKKEPITASSNKSVFN--SQRSPSMSIKNMKMENEELPKPQIL 295
           C     +    S +++ +   P TAS+ K +    +Q+SP  ++ ++ M           
Sbjct: 174 CQSTEARSPSTSDDTNQNSALPPTASTGKPLNGTVTQQSPLRTLGSLTMRTSS------T 233

Query: 296 GRNVPSLQQMPYVSTTGVGPNGKTITGFLYRYSNLE-VSILCVCHGESFSPAEFVKHAGG 355
           G     +  MP VS+   GPNG+ I GFLY+Y   E VSI+CVCHG+  SPAEFVKHAGG
Sbjct: 234 GDIGKIMMDMPMVSSKVEGPNGRKIDGFLYKYRKGEDVSIMCVCHGKFHSPAEFVKHAGG 293

Query: 356 EEISHPLRHISVLPTNGI 371
            ++S+PLRHI V P+  +
Sbjct: 294 GDVSNPLRHIVVNPSPSV 305

[Close]

BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: B1B5D3 (Ninja-family protein 1 OS=Triticum aestivum OX=4565 GN=AFP-A1 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-16
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 300 LQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGGEEISHP 359
           ++ MP VS+   GPNGK I GFLY+Y    EV I+CVCHG   +PAEFVKHAGG ++++P
Sbjct: 242 MEDMPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNP 301

Query: 360 LRHISVLPTNGI 371
           LRHI V P+  +
Sbjct: 302 LRHIVVNPSPSV 313

[Close]

BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q6YVY6 (Ninja-family protein Os07g0602900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0602900 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-16
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 300 LQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGGEEISHP 359
           ++ MP VS+   GPNG+ I GFLY+Y    EV I+CVCHG   +PAEFVKHAGG ++++P
Sbjct: 246 MEDMPMVSSRVDGPNGRKIDGFLYKYRKREEVRIVCVCHGNFLTPAEFVKHAGGGDVTNP 305

Query: 360 LRHISVLPTNGI 371
           LRHI V P+  +
Sbjct: 306 LRHIVVNPSRSV 317

[Close]

BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1ESV5 (ninja-family protein AFP2-like OS=Cucurbita moschata OX=3662 GN=LOC111437413 PE=3 SV=1)

HSP 1 Score: 748.0 bits (1930), Expect = 1.8e-212
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0


Query: 1   MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNR 60
           MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNR
Sbjct: 1   MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNR 60

Query: 61  GQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECRNGSAELMPYPYSSLQYVPFMNGFV 120
           GQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECRNGSAELMPYPYSSLQYVPFMNGFV
Sbjct: 61  GQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECRNGSAELMPYPYSSLQYVPFMNGFV 120

Query: 121 FPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSCGSSPVCS 180
           FPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSCGSSPVCS
Sbjct: 121 FPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSCGSSPVCS 180

Query: 181 SSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKPCSENG 240
           SSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKPCSENG
Sbjct: 181 SSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKPCSENG 240

Query: 241 TQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRNVPSL 300
           TQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRNVPSL
Sbjct: 241 TQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRNVPSL 300

Query: 301 QQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGEEISHPLR 360
           QQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGEEISHPLR
Sbjct: 301 QQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGEEISHPLR 360

Query: 361 HISVLPTNGIPSAIR 376
           HISVLPTNGIPSAIR
Sbjct: 361 HISVLPTNGIPSAIR 375

[Close]

BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1K6T7 (ninja-family protein AFP2-like OS=Cucurbita maxima OX=3661 GN=LOC111491188 PE=3 SV=1)

HSP 1 Score: 694.1 bits (1790), Expect = 3.2e-196
Identity = 357/384 (92.97%), Postives = 361/384 (94.01%), Query Frame = 0


Query: 1   MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNR 60
           MKSVVL DENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLW +D DEEDSGVTDAKNR
Sbjct: 1   MKSVVLPDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWINDGDEEDSGVTDAKNR 60

Query: 61  GQIRRRETKRKRDEEDERNPPLKREKKLQGVGY-------ECRNGSAELMPYPYSSLQYV 120
           GQIRRRETKRKRDEEDERNPPLKREKKLQGVGY       ECRN +AELMPYPYSSLQYV
Sbjct: 61  GQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECNVDREECRNETAELMPYPYSSLQYV 120

Query: 121 PFMNGFVFPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSC 180
           PFMNGFV PCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRG DGFSNGR NRKTGSC
Sbjct: 121 PFMNGFVLPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGLDGFSNGRTNRKTGSC 180

Query: 181 GSSPVCSSSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCP--NPKPNTNGSVNHD 240
           GSSPVCSSSVISDNYQSSSHEG GSSYTRNNSCNSSSDRHQMRCP  N  PNTN S+NHD
Sbjct: 181 GSSPVCSSSVISDNYQSSSHEGCGSSYTRNNSCNSSSDRHQMRCPNSNSNPNTNDSMNHD 240

Query: 241 KPKPCSENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQ 300
           KPKPCSEN TQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQ
Sbjct: 241 KPKPCSENRTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQ 300

Query: 301 ILGRNVPSLQQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAG 360
           IL RNVPSLQQMP VSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAG
Sbjct: 301 ILSRNVPSLQQMPCVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAG 360

Query: 361 GEEISHPLRHISVLPTNGIPSAIR 376
           GEEISHPLRHI+VLPTNGIPSAIR
Sbjct: 361 GEEISHPLRHITVLPTNGIPSAIR 384

[Close]

BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1DZY7 (uncharacterized protein LOC111026132 OS=Momordica charantia OX=3673 GN=LOC111026132 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 9.8e-97
Identity = 242/409 (59.17%), Postives = 279/409 (68.22%), Query Frame = 0


Query: 10  NNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNRGQI---RRR 69
           ++ D+++DL LSIGG  R LPE +T SGSS TL  SD DEE SGVTDAK RG+I   RRR
Sbjct: 4   HDGDMELDLGLSIGGSLRRLPE-TTTSGSSLTL-ISDGDEE-SGVTDAKARGEIQAVRRR 63

Query: 70  ETKRKRDEEDER--------NPPLKREKK---LQGVGYECRNGSAEL-MPYPYSSLQYVP 129
           E KRKR+E+  R        NPP K+ K+     G   +C      L MPY Y    YVP
Sbjct: 64  EAKRKREEKRHRRAQQQQPQNPPFKKGKQEAAALGSHSQCNVDHPPLQMPYTY----YVP 123

Query: 130 FMNGFVFPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSD-GFSNG----RKNRK 189
           F+NG+ FPCVVPYW+AA  G +   H PV CRSF PF+T++  +D   SNG     K+ K
Sbjct: 124 FLNGYAFPCVVPYWSAAAAGAD---HHPVPCRSFGPFQTNQNVADAALSNGCQSWSKSTK 183

Query: 190 --TGSCGSSPVCSSSVISDNY-QSSSHEGG-GSSYTRNNSCNSSSDRHQMRCPNPKPNTN 249
             +GS GSS VCSSSVISD+Y  SSSHEGG  SSYTR NS NSSSD HQM  PNP    N
Sbjct: 184 SASGSSGSS-VCSSSVISDHYHSSSSHEGGDSSSYTRRNSSNSSSDGHQMTQPNPNDPKN 243

Query: 250 GSVNHD--KPKPCSENGTQCEEKSGESHVH--------KKEPITAS--------SNKSVF 309
            S + D  KP PC +N TQC EKS +SHV         KKEPI ++        S K V 
Sbjct: 244 DSPSSDLVKPDPCVDNRTQCPEKSVQSHVSKSGVRTTIKKEPIASNKDDEVVEPSTKPVS 303

Query: 310 NS-QRSPSMSIKNMKMENEELPKPQILGRNVPSLQQMPYVSTTGVGPNGKTITGFLYRYS 369
           +S + SP MS+KN  MEN + PKPQI  RN+PSLQQMP VSTTGVGPNGKTITGFLY+YS
Sbjct: 304 SSLKSSPPMSLKNRNMENGKPPKPQIQTRNIPSLQQMPCVSTTGVGPNGKTITGFLYKYS 363

Query: 370 NLEVSILCVCHGESFSPAEFVKHAGGEEISHPLRHISVLPTNGIPSAIR 376
           NLEVSILCVCHGESF+PAEFVKHAGG E+SHPLRHI+VLPTN IPSAIR
Sbjct: 364 NLEVSILCVCHGESFAPAEFVKHAGGAEVSHPLRHITVLPTNVIPSAIR 401

[Close]

BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1HHX8 (ninja-family protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111463802 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 3.6e-83
Identity = 213/383 (55.61%), Postives = 238/383 (62.14%), Query Frame = 0


Query: 1   MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNR 60
           MKS V+ +E   D+D+DL LSIGG FR LPEK T   +          +E+SGVTD K R
Sbjct: 1   MKSAVIREE-GGDLDLDLGLSIGGAFRNLPEKLTLINNG--------SDEESGVTDEKIR 60

Query: 61  GQIRRRETKRKRDEEDERNPPLKREKKLQGVGYEC--RNGSAELMPYPYSSLQYVPFMN- 120
             IRR E KRKR  E+ERN PLKREKKL+G+G EC   N      PYPYSSLQYVPF+N 
Sbjct: 61  SAIRRGEAKRKR--EEERNRPLKREKKLEGLGSECDLMNNVDLQNPYPYSSLQYVPFLNG 120

Query: 121 -GFVFPCVVPYWAAAGHGGERTVHQP-VACRSFRPFETDRRGSDGFSNGRKNRKTGSCGS 180
            G+ FPC+ PYWA     GERT+HQP VACRS                G KNRKTGS GS
Sbjct: 121 YGYPFPCLTPYWAV----GERTLHQPAVACRSVPDV-----------GGSKNRKTGSSGS 180

Query: 181 SPVCSSSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKP 240
           SPVCSSSVISDNY SSS   G SS  R+NSCNSSS                  NH KPK 
Sbjct: 181 SPVCSSSVISDNYHSSSSHEGVSS--RSNSCNSSSK-----------------NHVKPKA 240

Query: 241 CSENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGR 300
           CS       EK  ESHV K                      IKN  M N + PKP+I  R
Sbjct: 241 CS-------EKFVESHVSKPR--------------------IKNSSMVNGKPPKPEIQSR 300

Query: 301 NVPSLQQMPYVSTTGVGPNG-KTI-TGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGE 360
           +V S +QMP VSTTG+ PNG KTI TGFLYRYSN EVSILCVCHGESFSPAEFV+H GG 
Sbjct: 301 HVQSFEQMPCVSTTGIAPNGTKTITTGFLYRYSNSEVSILCVCHGESFSPAEFVRHGGGG 311

Query: 361 EISHPLRHISVLPTNGI-PSAIR 376
           E+SHPL+HI+VLPTNGI PS+IR
Sbjct: 361 EVSHPLKHITVLPTNGIVPSSIR 311

[Close]

BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1HQF5 (ninja-family protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111466860 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82
Identity = 214/383 (55.87%), Postives = 240/383 (62.66%), Query Frame = 0


Query: 1   MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNR 60
           MK  V+ +E + D+D+DL LSIGG FR LPEK T   +          +E+SGVTD K R
Sbjct: 1   MKLAVIREE-DGDLDLDLGLSIGGGFRNLPEKLTLINNG--------SDEESGVTDEKIR 60

Query: 61  GQIRRRETKRKRDEEDERNPPLKREKKLQGVGYEC--RNGSAELMPYPYSSLQYVPFMN- 120
             IRR E KRKR  E+ERN PLKREKKL+G+G EC   N      PYPYSSLQYVPF+N 
Sbjct: 61  SAIRRGEAKRKR--EEERNRPLKREKKLEGLGSECDLMNNVDLQNPYPYSSLQYVPFING 120

Query: 121 -GFVFPCVVPYWAAAGHGGERTVHQP-VACRSFRPFETDRRGSDGFSNGRKNRKTGSCGS 180
            G+ FPC+ PYWAA    GER +HQP VACRS          SD    G KNRKTGS GS
Sbjct: 121 YGYAFPCLTPYWAA----GERILHQPAVACRSV---------SD--VGGSKNRKTGSSGS 180

Query: 181 SPVCSSSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKP 240
           SPVCSSSVISDNY SSS   G SS  R+NSCNSSS                  NH K KP
Sbjct: 181 SPVCSSSVISDNYHSSSSHEGVSS--RSNSCNSSSK-----------------NHVKSKP 240

Query: 241 CSENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGR 300
           CS       EK  ESHV K                      IKN  M N + PKP+I  R
Sbjct: 241 CS-------EKLVESHVSKPR--------------------IKNSSMVNGKPPKPEIQSR 300

Query: 301 NVPSLQQMPYVSTTGVGPNG-KTI-TGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGE 360
           +V S +QMP VSTTG+ PNG KTI TGFLYRYSNLEVSILC CHGESFSPAEFVKH GG 
Sbjct: 301 HVQSFEQMPCVSTTGIAPNGTKTITTGFLYRYSNLEVSILCGCHGESFSPAEFVKHGGGG 311

Query: 361 EISHPLRHISVLPTNGI-PSAIR 376
           ++SHPL+HI+VLPTNGI PS+IR
Sbjct: 361 QVSHPLKHITVLPTNGIVPSSIR 311

[Close]

BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G07250.1 (nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-22
Identity = 109/366 (29.78%), Postives = 151/366 (41.26%), Query Frame = 0


Query: 1   MKSVVLTDEN-NNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVT-DAK 60
           M    + DEN   +++++L LS+GG F+   EKS   G S  +      E+D+GV  D +
Sbjct: 1   MAEKFVEDENVEVELELELCLSLGGPFKK-TEKSKTFGQSNAVGF----EKDNGVNLDGR 60

Query: 61  NRGQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECRNGSAELMPYPYSSLQYVPFMNG 120
                R +ET++KR+          ++++  G   EC+    E                 
Sbjct: 61  TTNVTRIKETRKKRE---------AKQQQRSGEEGECKRIRTE----------------- 120

Query: 121 FVFPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSCGSSPV 180
                    +    +G +  +     C  +        GS       K+   G    SP+
Sbjct: 121 ---------YNGVSNGDDMDLSSINMCNGY--------GSGRLKESSKDVTIG----SPI 180

Query: 181 CSSSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKPCSE 240
           C+SS +SD   SS  EGG            S    Q+R P         VN+        
Sbjct: 181 CTSSSVSDPSSSSRQEGGSGDIGA-----QSGQTKQVRSP---------VNNIL------ 240

Query: 241 NGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRNVP 300
             T  E+    +   K       SN SV      P     N       LP          
Sbjct: 241 --TGTEQTVHNTDGSKDAETQEWSNSSVTKESGKPPKPHTNSNGNGSLLP---------- 281

Query: 301 SLQQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGEEISHP 360
              QMP V++TG GP GKT+ GFLYRYS  E+SI+CVCHG SFSPAEF+ HAGG  +SHP
Sbjct: 301 -FAQMPCVTSTGNGPEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEFIVHAGGTNVSHP 281

Query: 361 LRHISV 365
           LRHI+V
Sbjct: 361 LRHITV 281

[Close]

BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G29575.1 (ABI five binding protein 3 )

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 238 ENGTQCEEKSGESHVHKKE----PITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQIL 297
           E G+     SG S + + +    P+ A++NKSV  S  S     +N+  E          
Sbjct: 105 EEGSIGSSGSGSSGLSEVDTLLPPVQATTNKSVETSPSSAQSQPENLGKE---------A 164

Query: 298 GRNVPSLQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGG 357
            +N+  ++ MP+VSTTG GPNGK I GFLYRY    EV I+CVCHG   SPAEFVKHAGG
Sbjct: 165 SQNI--IEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGG 224

Query: 358 EEISHPLRHISVLPT 368
            +++HPL+HI V P+
Sbjct: 225 GDVAHPLKHIVVNPS 228

[Close]

BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G29575.3 (ABI five binding protein 3 )

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 238 ENGTQCEEKSGESHVHKKE----PITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQIL 297
           E G+     SG S + + +    P+ A++NKSV  S  S     +N+  E          
Sbjct: 105 EEGSIGSSGSGSSGLSEVDTLLPPVQATTNKSVETSPSSAQSQPENLGKE---------A 164

Query: 298 GRNVPSLQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGG 357
            +N+  ++ MP+VSTTG GPNGK I GFLYRY    EV I+CVCHG   SPAEFVKHAGG
Sbjct: 165 SQNI--IEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGG 224

Query: 358 EEISHPLRHISVLPT 368
            +++HPL+HI V P+
Sbjct: 225 GDVAHPLKHIVVNPS 228

[Close]

BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G29575.4 (ABI five binding protein 3 )

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 238 ENGTQCEEKSGESHVHKKE----PITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQIL 297
           E G+     SG S + + +    P+ A++NKSV  S  S     +N+  E          
Sbjct: 105 EEGSIGSSGSGSSGLSEVDTLLPPVQATTNKSVETSPSSAQSQPENLGKE---------A 164

Query: 298 GRNVPSLQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGG 357
            +N+  ++ MP+VSTTG GPNGK I GFLYRY    EV I+CVCHG   SPAEFVKHAGG
Sbjct: 165 SQNI--IEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGG 224

Query: 358 EEISHPLRHISVLPT 368
            +++HPL+HI V P+
Sbjct: 225 GDVAHPLKHIVVNPS 228

[Close]

BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT1G69260.1 (ABI five binding protein )

HSP 1 Score: 89.4 bits (220), Expect = 6.9e-18
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 0


Query: 237 SENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRN 296
           SE  T+       S     +P   ++ K     +R  S+ + NMKME      PQ  G++
Sbjct: 220 SELETKASSDEARSLPSTTQPQQETTTKPTNRLRRLSSVDM-NMKME------PQGKGKS 279

Query: 297 VPSLQQMPYVSTTGVGPNGKTITGFLYRY-SNLEVSILCVCHGESFSPAEFVKHAGGEEI 356
                +MP V T G GPNGK + G LYRY S  EV I+CVCHG+  SPA+FVKHAGG  +
Sbjct: 280 -----EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHV 336

Query: 357 SHPLRHISV 365
            HPLRHI V
Sbjct: 340 DHPLRHIVV 336

The following BLAST results are available for this feature:

BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F39	8.5e-21	45.19	Ninja-family protein AFP3 OS=Arabidopsis thaliana OX=3702 GN=AFP3 PE=1 SV=1	[more]
Q9LQ98	9.7e-17	44.19	Ninja-family protein AFP1 OS=Arabidopsis thaliana OX=3702 GN=AFP1 PE=1 SV=1	[more]
Q10JI3	9.7e-17	39.13	Ninja-family protein Os03g0419100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
B1B5D3	2.8e-16	55.56	Ninja-family protein 1 OS=Triticum aestivum OX=4565 GN=AFP-A1 PE=3 SV=1	[more]
Q6YVY6	3.7e-16	54.17	Ninja-family protein Os07g0602900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]

BLAST of CmoCh02G017110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESV5	1.8e-212	100.00	ninja-family protein AFP2-like OS=Cucurbita moschata OX=3662 GN=LOC111437413 PE=...	[more]
A0A6J1K6T7	3.2e-196	92.97	ninja-family protein AFP2-like OS=Cucurbita maxima OX=3661 GN=LOC111491188 PE=3 ...	[more]
A0A6J1DZY7	9.8e-97	59.17	uncharacterized protein LOC111026132 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A6J1HHX8	3.6e-83	55.61	ninja-family protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111463802 PE=3 S...	[more]
A0A6J1HQF5	5.2e-82	55.87	ninja-family protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111466860 PE=3 SV=...	[more]

BLAST of CmoCh02G017110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07250.1	1.6e-22	29.78	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-c...	[more]
AT3G29575.1	6.0e-22	45.19	ABI five binding protein 3	[more]
AT3G29575.3	6.0e-22	45.19	ABI five binding protein 3	[more]
AT3G29575.4	6.0e-22	45.19	ABI five binding protein 3	[more]
AT1G69260.1	6.9e-18	44.19	ABI five binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032308	Jas TPL-binding domain	PFAM	PF16135	TDBD	coord: 330..362 e-value: 4.6E-8 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..88
None	No IPR available	PANTHER	PTHR31413:SF15	NUCLEAR TRANSPORT FACTOR 2/RNA RECOGNITION MOTIF PROTEIN	coord: 7..367
IPR031307	Ninja family	PANTHER	PTHR31413	AFP HOMOLOG 2	coord: 7..367

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017110.1	CmoCh02G017110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005634	nucleus