CmoCh02G017110 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAATGGCGATGCTCTAAAAATATCTCTCTGATTATATCCTTTCGTCTTGCTTTCTTCTTCCTTCCTCCAACCCCACCGCCGTCCTTACCTCCTCCATGGCCGACACGTCACCCCTTCTCCATTCCCCGAGAATCACTCCGTCCAATCCATATAACCCAATCCCGCATTCCCACATTTGTAATCTTCTTTTTCTGCTGCGATTCTCTTCATCTTTGTTCTTCGATTTTGTGAGAAGATGAAATCTGTGGTCTTAACAGATGAAAACAACAACGACGTAGACGTCGATTTAGCGTTGTCAATCGGCGGAGTTTTTAGAACCTTACCGGAGAAATCGACGGCGTCTGGTTCTTCCTTCACGTTGTGGACTAGCGATGTAGACGAGGAGGATAGCGGAGTTACTGATGCCAAGAACAGAGGCCAGATCCGGCGACGAGAGACCAAGAGGAAACGAGACGAGGAAGACGAACGGAATCCGCCATTGAAGAGGGAGAAGAAACTTCAAGGCGTTGGATATGAATGTCGAAATGGATCTGCAGAGCTAATGCCGTATCCTTACTCGTCGTTGCAGTACGTGCCGTTTATGAATGGCTTCGTTTTCCCCTGTGTGGTGCCGTACTGGGCGGCGGCTGGCCACGGCGGTGAGAGAACCGTCCATCAGCCGGTAGCTTGCCGGAGCTTCAGGCCGTTTGAGACGGATCGAAGAGGTTCAGACGGATTTTCGAATGGAAGGAAGAACAGGAAAACTGGGTCTTGTGGATCATCCCCTGTTTGCAGTTCCTCTGTTATTTCTGATAATTACCAGAGTTCATCTCATGAAGGTGCCTGCAAATCTTGTGTTTCTCAGAATGTGTCAATCCTCGATCATTGATTTCCTTTTCATGAGTATGGTTCTTTTTTTTTCCCTCTCAGAATTGAGATTTTACTCTGTTGTTCATTTTCTATCAGGAGGTGGTAGCAGCTATACCAGAAACAATTCATGTAATTCCTCATCAGATCGACACCAAATGCGATGTCCGAACCCGAAACCGAATACGAATGGTTCTGTGAATCATGATAAACCAAAGCCTTGCAGTGAGAACGGGACACAATGTGAAGAGAAATCTGGTGAATCCCATGTCCACAAGAAAGAGCCAATCACTGCATCGAGCAACAAATCTGTTTTCAATTCCCAGAGGTCTCCTTCCATGTCAATAAAGAACATGAAGATGGAGAATGAGGAACTTCCAAAGCCTCAAATTCTAGGCCGGAATGTGCCAAGCCTTCAGCAAATGCCCTACGTTTCGACGACCGGAGTTGGTCCCAACGGCAAAACCATCACTGGATTCTTGTACAGATACTCCAACTTGGAGGTCAGTATTTTGTGCGTCTGCCATGGAGAATCCTTTTCACCGGCCGAGTTCGTCAAGCACGCCGGGGGCGAAGAAATTTCTCACCCTTTGAGACACATTAGTGTTCTTCCTACTAATGGAATACCATCTGCAATCAGATGAAAGCATTTGATCTTAGATCATAACAGCTTAACGTGTTTTTTTTATATTGAAACCTTGGGGCAGGAGAGGATCTGTAGCGAAGTACTTCAACGTCTTATTTGAGGGCTCTTTCAGGCCCCAAATCTTTTGGCTTTGTGCATATTTTTAGAACATTTTCCAAGGCATTCAGATATAGAGTTTCAACTATTACATATAGAGACTAGTTCCAATGCTAATATCATTCTAATGTTCTATTGGGGTTGAAACTATTTTTTAATCATTATCTAAGTTGTCGAAGTACCTCATATGATATTGTTCTAAACAGATAGTCACCATCACTCGAACTCATTGATGTCGATCCTCCAGAATATTAGAGCTCTAGAAAAAAGGGAATGTATCAGTATTTGATATAGTTTTCAACCTTATAACAAGAAATAAGAATTGAATTATACTCCGATTCCCACCACCATCGCTCCAATGTAAAAAGATCATTAATTTTTTCGCAAAGCTGTGATGTCATAGAGACGAATACCAAACTCATGAG TTAATGGCGATGCTCTAAAAATATCTCTCTGATTATATCCTTTCGTCTTGCTTTCTTCTTCCTTCCTCCAACCCCACCGCCGTCCTTACCTCCTCCATGGCCGACACGTCACCCCTTCTCCATTCCCCGAGAATCACTCCGTCCAATCCATATAACCCAATCCCGCATTCCCACATTTGTAATCTTCTTTTTCTGCTGCGATTCTCTTCATCTTTGTTCTTCGATTTTGTGAGAAGATGAAATCTGTGGTCTTAACAGATGAAAACAACAACGACGTAGACGTCGATTTAGCGTTGTCAATCGGCGGAGTTTTTAGAACCTTACCGGAGAAATCGACGGCGTCTGGTTCTTCCTTCACGTTGTGGACTAGCGATGTAGACGAGGAGGATAGCGGAGTTACTGATGCCAAGAACAGAGGCCAGATCCGGCGACGAGAGACCAAGAGGAAACGAGACGAGGAAGACGAACGGAATCCGCCATTGAAGAGGGAGAAGAAACTTCAAGGCGTTGGATATGAATGTCGAAATGGATCTGCAGAGCTAATGCCGTATCCTTACTCGTCGTTGCAGTACGTGCCGTTTATGAATGGCTTCGTTTTCCCCTGTGTGGTGCCGTACTGGGCGGCGGCTGGCCACGGCGGTGAGAGAACCGTCCATCAGCCGGTAGCTTGCCGGAGCTTCAGGCCGTTTGAGACGGATCGAAGAGGTTCAGACGGATTTTCGAATGGAAGGAAGAACAGGAAAACTGGGTCTTGTGGATCATCCCCTGTTTGCAGTTCCTCTGTTATTTCTGATAATTACCAGAGTTCATCTCATGAAGGAGGTGGTAGCAGCTATACCAGAAACAATTCATGTAATTCCTCATCAGATCGACACCAAATGCGATGTCCGAACCCGAAACCGAATACGAATGGTTCTGTGAATCATGATAAACCAAAGCCTTGCAGTGAGAACGGGACACAATGTGAAGAGAAATCTGGTGAATCCCATGTCCACAAGAAAGAGCCAATCACTGCATCGAGCAACAAATCTGTTTTCAATTCCCAGAGGTCTCCTTCCATGTCAATAAAGAACATGAAGATGGAGAATGAGGAACTTCCAAAGCCTCAAATTCTAGGCCGGAATGTGCCAAGCCTTCAGCAAATGCCCTACGTTTCGACGACCGGAGTTGGTCCCAACGGCAAAACCATCACTGGATTCTTGTACAGATACTCCAACTTGGAGGTCAGTATTTTGTGCGTCTGCCATGGAGAATCCTTTTCACCGGCCGAGTTCGTCAAGCACGCCGGGGGCGAAGAAATTTCTCACCCTTTGAGACACATTAGTGTTCTTCCTACTAATGGAATACCATCTGCAATCAGATGAAAGCATTTGATCTTAGATCATAACAGCTTAACGTGTTTTTTTTATATTGAAACCTTGGGGCAGGAGAGGATCTGTAGCGAAGTACTTCAACGTCTTATTTGAGGGCTCTTTCAGGCCCCAAATCTTTTGGCTTTGTGCATATTTTTAGAACATTTTCCAAGGCATTCAGATATAGAGTTTCAACTATTACATATAGAGACTAGTTCCAATGCTAATATCATTCTAATGTTCTATTGGGGTTGAAACTATTTTTTAATCATTATCTAAGTTGTCGAAGTACCTCATATGATATTGTTCTAAACAGATAGTCACCATCACTCGAACTCATTGATGTCGATCCTCCAGAATATTAGAGCTCTAGAAAAAAGGGAATGTATCAGTATTTGATATAGTTTTCAACCTTATAACAAGAAATAAGAATTGAATTATACTCCGATTCCCACCACCATCGCTCCAATGTAAAAAGATCATTAATTTTTTCGCAAAGCTGTGATGTCATAGAGACGAATACCAAACTCATGAG ATGAAATCTGTGGTCTTAACAGATGAAAACAACAACGACGTAGACGTCGATTTAGCGTTGTCAATCGGCGGAGTTTTTAGAACCTTACCGGAGAAATCGACGGCGTCTGGTTCTTCCTTCACGTTGTGGACTAGCGATGTAGACGAGGAGGATAGCGGAGTTACTGATGCCAAGAACAGAGGCCAGATCCGGCGACGAGAGACCAAGAGGAAACGAGACGAGGAAGACGAACGGAATCCGCCATTGAAGAGGGAGAAGAAACTTCAAGGCGTTGGATATGAATGTCGAAATGGATCTGCAGAGCTAATGCCGTATCCTTACTCGTCGTTGCAGTACGTGCCGTTTATGAATGGCTTCGTTTTCCCCTGTGTGGTGCCGTACTGGGCGGCGGCTGGCCACGGCGGTGAGAGAACCGTCCATCAGCCGGTAGCTTGCCGGAGCTTCAGGCCGTTTGAGACGGATCGAAGAGGTTCAGACGGATTTTCGAATGGAAGGAAGAACAGGAAAACTGGGTCTTGTGGATCATCCCCTGTTTGCAGTTCCTCTGTTATTTCTGATAATTACCAGAGTTCATCTCATGAAGGAGGTGGTAGCAGCTATACCAGAAACAATTCATGTAATTCCTCATCAGATCGACACCAAATGCGATGTCCGAACCCGAAACCGAATACGAATGGTTCTGTGAATCATGATAAACCAAAGCCTTGCAGTGAGAACGGGACACAATGTGAAGAGAAATCTGGTGAATCCCATGTCCACAAGAAAGAGCCAATCACTGCATCGAGCAACAAATCTGTTTTCAATTCCCAGAGGTCTCCTTCCATGTCAATAAAGAACATGAAGATGGAGAATGAGGAACTTCCAAAGCCTCAAATTCTAGGCCGGAATGTGCCAAGCCTTCAGCAAATGCCCTACGTTTCGACGACCGGAGTTGGTCCCAACGGCAAAACCATCACTGGATTCTTGTACAGATACTCCAACTTGGAGGTCAGTATTTTGTGCGTCTGCCATGGAGAATCCTTTTCACCGGCCGAGTTCGTCAAGCACGCCGGGGGCGAAGAAATTTCTCACCCTTTGAGACACATTAGTGTTCTTCCTACTAATGGAATACCATCTGCAATCAGATGA MKSVVLTDENNNDVDVDLALSIGGVFRTLPEKSTASGSSFTLWTSDVDEEDSGVTDAKNRGQIRRRETKRKRDEEDERNPPLKREKKLQGVGYECRNGSAELMPYPYSSLQYVPFMNGFVFPCVVPYWAAAGHGGERTVHQPVACRSFRPFETDRRGSDGFSNGRKNRKTGSCGSSPVCSSSVISDNYQSSSHEGGGSSYTRNNSCNSSSDRHQMRCPNPKPNTNGSVNHDKPKPCSENGTQCEEKSGESHVHKKEPITASSNKSVFNSQRSPSMSIKNMKMENEELPKPQILGRNVPSLQQMPYVSTTGVGPNGKTITGFLYRYSNLEVSILCVCHGESFSPAEFVKHAGGEEISHPLRHISVLPTNGIPSAIR Homology
BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q94F39 (Ninja-family protein AFP3 OS=Arabidopsis thaliana OX=3702 GN=AFP3 PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 8.5e-21 Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q9LQ98 (Ninja-family protein AFP1 OS=Arabidopsis thaliana OX=3702 GN=AFP1 PE=1 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.7e-17 Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q10JI3 (Ninja-family protein Os03g0419100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0419100 PE=2 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.7e-17 Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: B1B5D3 (Ninja-family protein 1 OS=Triticum aestivum OX=4565 GN=AFP-A1 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.8e-16 Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy Swiss-Prot
Match: Q6YVY6 (Ninja-family protein Os07g0602900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0602900 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.7e-16 Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1ESV5 (ninja-family protein AFP2-like OS=Cucurbita moschata OX=3662 GN=LOC111437413 PE=3 SV=1) HSP 1 Score: 748.0 bits (1930), Expect = 1.8e-212 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1K6T7 (ninja-family protein AFP2-like OS=Cucurbita maxima OX=3661 GN=LOC111491188 PE=3 SV=1) HSP 1 Score: 694.1 bits (1790), Expect = 3.2e-196 Identity = 357/384 (92.97%), Postives = 361/384 (94.01%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1DZY7 (uncharacterized protein LOC111026132 OS=Momordica charantia OX=3673 GN=LOC111026132 PE=3 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 9.8e-97 Identity = 242/409 (59.17%), Postives = 279/409 (68.22%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1HHX8 (ninja-family protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111463802 PE=3 SV=1) HSP 1 Score: 318.5 bits (815), Expect = 3.6e-83 Identity = 213/383 (55.61%), Postives = 238/383 (62.14%), Query Frame = 0
BLAST of CmoCh02G017110 vs. ExPASy TrEMBL
Match: A0A6J1HQF5 (ninja-family protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111466860 PE=3 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82 Identity = 214/383 (55.87%), Postives = 240/383 (62.66%), Query Frame = 0
BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G07250.1 (nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein ) HSP 1 Score: 104.8 bits (260), Expect = 1.6e-22 Identity = 109/366 (29.78%), Postives = 151/366 (41.26%), Query Frame = 0
BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G29575.1 (ABI five binding protein 3 ) HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22 Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G29575.3 (ABI five binding protein 3 ) HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22 Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT3G29575.4 (ABI five binding protein 3 ) HSP 1 Score: 102.8 bits (255), Expect = 6.0e-22 Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of CmoCh02G017110 vs. TAIR 10
Match: AT1G69260.1 (ABI five binding protein ) HSP 1 Score: 89.4 bits (220), Expect = 6.9e-18 Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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