Cmc09g0243651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0243651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr09: 6272953 .. 6273441 (-)
RNA-Seq Expression	Cmc09g0243651
Synteny	Cmc09g0243651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCCTATACTTCTGCAGTTGGGAGCCTGATGTATGCAATGTTATGTACTAAACCTGACATTTGCTATTCAGTGAGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTAATCATTGGACAGCCGTTAAGAATACTTTAAAATATCTTAGAAAAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTAATCCTTATTGGATACACTGAATCCAATTTTCAAACTGATAAAGATGCTAAAAAGTCTACATCAAGATCAATTTTCACTTTGAACGGAGGAGCAGTAGTATGGAGAAGCATCAAACAATCTTGTATTACCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGTGAAAGAAACAGTATGGCTTAAAAAGTTCTTAACAGATTTAGAAGTTGTTCCAAATATGCATTTGTCAATCACCTTATACTGTGACAACAGTGGTGCAGCTGCAAATTCATGA

mRNA sequence

ATGAGTAACATTCCCTATACTTCTGCAGTTGGGAGCCTGATGTATGCAATGTTATGTACTAAACCTGACATTTGCTATTCAGTGAGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTAATCATTGGACAGCCGTTAAGAATACTTTAAAATATCTTAGAAAAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTAATCCTTATTGGATACACTGAATCCAATTTTCAAACTGATAAAGATGCTAAAAAGTCTACATCAAGATCAATTTTCACTTTGAACGGAGGAGCAGTAGTATGGAGAAGCATCAAACAATCTTGTATTACCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGTGAAAGAAACAGTATGGCTTAAAAAGTTCTTAACAGATTTAGAAGTTGTTCCAAATATGCATTTGTCAATCACCTTATACTGTGACAACAGTGGTGCAGCTGCAAATTCATGA

Coding sequence (CDS)

ATGAGTAACATTCCCTATACTTCTGCAGTTGGGAGCCTGATGTATGCAATGTTATGTACTAAACCTGACATTTGCTATTCAGTGAGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTAATCATTGGACAGCCGTTAAGAATACTTTAAAATATCTTAGAAAAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTAATCCTTATTGGATACACTGAATCCAATTTTCAAACTGATAAAGATGCTAAAAAGTCTACATCAAGATCAATTTTCACTTTGAACGGAGGAGCAGTAGTATGGAGAAGCATCAAACAATCTTGTATTACCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAGTGAAAGAAACAGTATGGCTTAAAAAGTTCTTAACAGATTTAGAAGTTGTTCCAAATATGCATTTGTCAATCACCTTATACTGTGACAACAGTGGTGCAGCTGCAAATTCATGA

Protein sequence

MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYMLVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYVAACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS

Homology

[Close]

BLAST of Cmc09g0243651 vs. NCBI nr
Match: TYK05766.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.2e-83
Identity = 156/162 (96.30%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIPY SAV SLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLR+TKDYM
Sbjct: 1   MSNIPYASAVESLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRRTKDYM 60

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLILIGYTESNFQTDKDAKKST RSIFTLNGGAVVWRSIKQSCITDSTMEAEYV
Sbjct: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTIRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEAVKETVWLKKFLTDLEVVPNMHL ITLYCDNSGA ANS
Sbjct: 121 AACEAVKETVWLKKFLTDLEVVPNMHLPITLYCDNSGATANS 162

[Close]

BLAST of Cmc09g0243651 vs. NCBI nr
Match: KAA0053196.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00146.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 142/162 (87.65%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIPY SAVGSLMYAMLCT PDI YSV +VSRYQSNPGR+HWTAVKN LKYLR+TKDYM
Sbjct: 1   MSNIPYASAVGSLMYAMLCTSPDIYYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVY SKDLIL GYT+SNFQ+DKDA+KSTS S+FTLNGGAVVWRSIKQSCI DSTMEAEYV
Sbjct: 61  LVYSSKDLILTGYTDSNFQSDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEYV 120

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA KE VWLKKFLTDLE+VPNMHLSITLYCDNSGA ANS
Sbjct: 121 AACEAAKEAVWLKKFLTDLEIVPNMHLSITLYCDNSGAVANS 162

[Close]

BLAST of Cmc09g0243651 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIPY  AVGSLMYAMLCT+PDICYSV IVSRYQSNPGR+HWT VKN LKYLR+TKDYM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLILIGYT+S+FQTDKDA+KSTS S+FTLNGGAVVWRSIKQSCI DSTME EYV
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 270

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA KE VWLKKFLTDLE VPNMHL ITLYCDNSGA ANS
Sbjct: 271 AACEAAKEAVWLKKFLTDLEGVPNMHLPITLYCDNSGAVANS 312

[Close]

BLAST of Cmc09g0243651 vs. NCBI nr
Match: KAA0050132.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 141/162 (87.04%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNI Y  AVGSLMYAMLCT+PDICYSV IVSRYQSNPGR+HWTA+KN LKYLR+TKDYM
Sbjct: 119 MSNISYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAIKNILKYLRRTKDYM 178

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLILIGYT+S+FQTDKDA+KSTS S+FTLNGGAVVWRSIKQSCI DSTME EYV
Sbjct: 179 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 238

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA K+ VWLKKFLTDLE VPNMHLSITLYCDNSGA ANS
Sbjct: 239 AACEAAKKAVWLKKFLTDLEGVPNMHLSITLYCDNSGAVANS 280

[Close]

BLAST of Cmc09g0243651 vs. NCBI nr
Match: KAA0032291.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 142/162 (87.65%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIP+ SAVGSLMYAMLCT+PDICYSV IVSRYQSNPGR+HW AVKN LKYLRKTKDYM
Sbjct: 266 MSNIPFASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWIAVKNILKYLRKTKDYM 325

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLIL G+T+S+FQ DKDA+KSTS S+FTLNGGAVVWRSIKQSCI  STMEAEYV
Sbjct: 326 LVYGSKDLILTGHTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSCIVGSTMEAEYV 385

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA KE VWLKKFLTDLEVVPNMHLSITLYCDNSGA ANS
Sbjct: 386 AACEAAKEAVWLKKFLTDLEVVPNMHLSITLYCDNSGAVANS 427

[Close]

BLAST of Cmc09g0243651 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.6e-38
Identity = 77/158 (48.73%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1    MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
            M+ +PY+SAVGSLMYAM+CT+PDI ++V +VSR+  NPG+ HW AVK  L+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
            L +G  D IL GYT+++   D D +KS++  +FT +GGA+ W+S  Q C+  ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGA 159
            AA E  KE +WLK+FL +L +    ++   +YCD+  A
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSA 1260

[Close]

BLAST of Cmc09g0243651 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.4e-26
Identity = 57/133 (42.86%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           M N+PY SAVG++MY M+ T+PD+  +V ++S++ S+P   HW A+K  L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDLI-LIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEY 120
           L +       L+GY+++++  D ++++STS  +F LNGG V WRS KQ  +  S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VAACEAVKETVWL 133
           +A  EA +E VWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc09g0243651 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-21
Identity = 59/160 (36.88%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 3    NIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYMLV 62
            N P  S +G LMY MLCT+PD+  +V I+SRY S      W  +K  L+YL+ T D  L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSKDLI----LIGYTESNFQTDKDAKKSTSRSIFTL-NGGAVVWRSIKQSCITDSTMEA 122
            +  K+L     +IGY +S++   +  +KST+  +F + +   + W + +Q+ +  S+ EA
Sbjct: 1238 F-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEA 1297

Query: 123  EYVAACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSG 158
            EY+A  EAV+E +WLK  LT + +   +   I +Y DN G
Sbjct: 1298 EYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQG 1334

[Close]

BLAST of Cmc09g0243651 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-16
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 0


Query: 6    YTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDY-MLVYG 65
            Y   VGSL Y +  T+PD+ Y+V  +S+Y   P  +HW A+K  L+YL  T D+ + +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYVAACE 125
               L L  Y+++++  D D   ST+  I  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGA 159
               E  W+   LT+L +   +     +YCDN GA
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGA 1378

[Close]

BLAST of Cmc09g0243651 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 0


Query: 6    YTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDY-MLVYG 65
            Y   VGSL Y +  T+PDI Y+V  +S++   P   H  A+K  L+YL  T ++ + +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYVAACE 125
               L L  Y+++++  DKD   ST+  I  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGA 159
               E  W+   LT+L +   +     +YCDN GA
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGA 1395

[Close]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL
Match: A0A5D3C5Y6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002550 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 156/162 (96.30%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIPY SAV SLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLR+TKDYM
Sbjct: 1   MSNIPYASAVESLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRRTKDYM 60

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLILIGYTESNFQTDKDAKKST RSIFTLNGGAVVWRSIKQSCITDSTMEAEYV
Sbjct: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTIRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEAVKETVWLKKFLTDLEVVPNMHL ITLYCDNSGA ANS
Sbjct: 121 AACEAVKETVWLKKFLTDLEVVPNMHLPITLYCDNSGATANS 162

[Close]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL
Match: A0A5D3BPF9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00340 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.4e-76
Identity = 142/162 (87.65%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIPY SAVGSLMYAMLCT PDI YSV +VSRYQSNPGR+HWTAVKN LKYLR+TKDYM
Sbjct: 1   MSNIPYASAVGSLMYAMLCTSPDIYYSVGMVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 60

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVY SKDLIL GYT+SNFQ+DKDA+KSTS S+FTLNGGAVVWRSIKQSCI DSTMEAEYV
Sbjct: 61  LVYSSKDLILTGYTDSNFQSDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEYV 120

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA KE VWLKKFLTDLE+VPNMHLSITLYCDNSGA ANS
Sbjct: 121 AACEAAKEAVWLKKFLTDLEIVPNMHLSITLYCDNSGAVANS 162

[Close]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.0e-76
Identity = 142/162 (87.65%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIPY  AVGSLMYAMLCT+PDICYSV IVSRYQSNPGR+HWT VKN LKYLR+TKDYM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLILIGYT+S+FQTDKDA+KSTS S+FTLNGGAVVWRSIKQSCI DSTME EYV
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 270

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA KE VWLKKFLTDLE VPNMHL ITLYCDNSGA ANS
Sbjct: 271 AACEAAKEAVWLKKFLTDLEGVPNMHLPITLYCDNSGAVANS 312

[Close]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL
Match: A0A5A7SRW5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G00090 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 142/162 (87.65%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNIP+ SAVGSLMYAMLCT+PDICYSV IVSRYQSNPGR+HW AVKN LKYLRKTKDYM
Sbjct: 266 MSNIPFASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWIAVKNILKYLRKTKDYM 325

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLIL G+T+S+FQ DKDA+KSTS S+FTLNGGAVVWRSIKQSCI  STMEAEYV
Sbjct: 326 LVYGSKDLILTGHTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSCIVGSTMEAEYV 385

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA KE VWLKKFLTDLEVVPNMHLSITLYCDNSGA ANS
Sbjct: 386 AACEAAKEAVWLKKFLTDLEVVPNMHLSITLYCDNSGAVANS 427

[Close]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL
Match: A0A5A7U2R8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001560 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 141/162 (87.04%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 1   MSNIPYTSAVGSLMYAMLCTKPDICYSVRIVSRYQSNPGRNHWTAVKNTLKYLRKTKDYM 60
           MSNI Y  AVGSLMYAMLCT+PDICYSV IVSRYQSNPGR+HWTA+KN LKYLR+TKDYM
Sbjct: 119 MSNISYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAIKNILKYLRRTKDYM 178

Query: 61  LVYGSKDLILIGYTESNFQTDKDAKKSTSRSIFTLNGGAVVWRSIKQSCITDSTMEAEYV 120
           LVYGSKDLILIGYT+S+FQTDKDA+KSTS S+FTLNGGAVVWRSIKQSCI DSTME EYV
Sbjct: 179 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 238

Query: 121 AACEAVKETVWLKKFLTDLEVVPNMHLSITLYCDNSGAAANS 163
           AACEA K+ VWLKKFLTDLE VPNMHLSITLYCDNSGA ANS
Sbjct: 239 AACEAAKKAVWLKKFLTDLEGVPNMHLSITLYCDNSGAVANS 280

The following BLAST results are available for this feature:

BLAST of Cmc09g0243651 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05766.1	7.2e-83	96.30	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0053196.1	1.1e-75	87.65	gag/pol protein [Cucumis melo var. makuwa] >TYK00146.1 gag/pol protein [Cucumis ...	[more]
TYK06386.1	1.5e-75	87.65	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050132.1	2.5e-75	87.04	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032291.1	2.5e-75	87.65	gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc09g0243651 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.6e-38	48.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	6.4e-26	42.86	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	1.6e-21	36.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	6.0e-16	33.77	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.3e-14	33.12	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5Y6	3.5e-83	96.30	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00255...	[more]
A0A5D3BPF9	5.4e-76	87.65	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G003...	[more]
A0A5D3C7T2	7.0e-76	87.65	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081...	[more]
A0A5A7SRW5	1.2e-75	87.65	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G0009...	[more]
A0A5A7U2R8	1.2e-75	87.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G0015...	[more]

BLAST of Cmc09g0243651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 82..158
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 82..158
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..158 e-value: 8.25131E-35 score: 116.799

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0243651.1	Cmc09g0243651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding