Cmc09g0241221 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0241221
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr09: 3263714 .. 3265825 (-)
RNA-Seq ExpressionCmc09g0241221
SyntenyCmc09g0241221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTCAAGGTTGGAACAGGAGATGTTATTTCAGCTCGTGTAGTAGGAGATACTAAGTTGTTTTTCGAAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCACTTCTAAGAATGGTGCACATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTCAGAACTACTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGAAAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAAATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTTCGATGAACGTAAAAGCTAGAGAGGATTTTGAATACTTCATCTCTTTTATAGATGATTATTTAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTCTTGAAAAGTTCAAGGATTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGTTAAAACATGAAATCCAATCTCAACTCTCAGCACCTAGCACAGCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTCATTCAATAATGAGTTATGCTCAATTTCCTAGCTTGTTTTAGGGGTATGCAGTAGAGACTGCGGTTTATATCTTGAATAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGGAGAGAACGTAAACCTAGTTTAAGTCACTTCAGAATTTGGGGTTGTCCAGCACACGTGTTGGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGAAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGGATCAACAAGGGTTGTTGATGAAGTTGGTCTCTCGTCAAGAGTTGATCAAACCACCACATCAGGTTAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGTAGTGGAAGGGTTGTATCGCAACCTAATTGTTACTTGGGTTTAATTAAAACTCAGGTTGTCATACCAGATGATGGTGCTAAGGATCCATTGTCCTATAAATAGACAATGAATGATGTAGATAAGAACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTTTATGTACTTCAATTCAGTGTGAGAGCTTGTAGATCTGCCTGAAGGGGTAAAACCTATAGGGTGTAAGTGGATCTATAAGAGAAAAAGAGATTCAGCTGGGAAGGTACATACCTTCAAAGCTAGACTTGTAGCAAAAGGATATACCCAAAGGGAATGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGCCATATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTACTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTGAATCTATCCATTTATGCGTTGAAACAAGCATCTAGATCTTTGAACATTAGGTTTGATACTACGATCAAATCTTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCATTAGGAATAATGTGAGATACCTTACTGACGTTAAAACTTGGCTAGCAGCCCAATTCCAATGA

mRNA sequence

ATGACACTCAAGGTTGGAACAGGAGATGTTATTTCAGCTCGTGTAGTAGGAGATACTAAGTTGTTTTTCGAAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCACTTCTAAGAATGGTGCACATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTCAGAACTACTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGAAAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAAATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTTCGATGAACGTAAAAGCTAGAGAGGATTTTGAATACTTCATCTCTTTTATAGATGATTATTTAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTCTTGAAAAGTTCAAGGATTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGTTAAAACATGAAATCCAATCTCAACTCTCAGCACCTAGCACAGCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGGGTATGCAGTAGAGACTGCGGTTTATATCTTGAATAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGGAGAGAACGTAAACCTAGTTTAAGTCACTTCAGAATTTGGGGTTGTCCAGCACACGTGTTGGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGAAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGGATCAACAAGGGTTGTTGATGAAGTTGGTCTCTCGTCAAGAGTTGATCAAACCACCACATCAGGGTGTAAGTGGATCTATAAGAGAAAAAGAGATTCAGCTGGGAAGGTACATACCTTCAAAGCTAGACTTGTAGCAAAAGGATATACCCAAAGGGAATGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGCCATATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTACTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTGAATCTATCCATTTATGCGTTGAAACAAGCATCTAGATCTTTGAACATTAGGTTTGATACTACGATCAAATCTTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCATTAGGAATAATGTGAGATACCTTACTGACGTTAAAACTTGGCTAGCAGCCCAATTCCAATGA

Coding sequence (CDS)

ATGACACTCAAGGTTGGAACAGGAGATGTTATTTCAGCTCGTGTAGTAGGAGATACTAAGTTGTTTTTCGAAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCACTTCTAAGAATGGTGCACATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTCAGAACTACTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGAAAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAAATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTTCGATGAACGTAAAAGCTAGAGAGGATTTTGAATACTTCATCTCTTTTATAGATGATTATTTAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTCTTGAAAAGTTCAAGGATTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGTTAAAACATGAAATCCAATCTCAACTCTCAGCACCTAGCACAGCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACCTTGTTAGACATGGGGTATGCAGTAGAGACTGCGGTTTATATCTTGAATAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGGAGAGAACGTAAACCTAGTTTAAGTCACTTCAGAATTTGGGGTTGTCCAGCACACGTGTTGGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGAAAGAAGACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGGATCAACAAGGGTTGTTGATGAAGTTGGTCTCTCGTCAAGAGTTGATCAAACCACCACATCAGGGTGTAAGTGGATCTATAAGAGAAAAAGAGATTCAGCTGGGAAGGTACATACCTTCAAAGCTAGACTTGTAGCAAAAGGATATACCCAAAGGGAATGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGCCATATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTACTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTGAATCTATCCATTTATGCGTTGAAACAAGCATCTAGATCTTTGAACATTAGGTTTGATACTACGATCAAATCTTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTCATTAGGAATAATGTGAGATACCTTACTGACGTTAAAACTTGGCTAGCAGCCCAATTCCAATGA

Protein sequence

MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTSGCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAAQFQ
Homology
[Close]
BLAST of Cmc09g0241221 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1072.4 bits (2772), Expect = 1.4e-309
Identity = 557/703 (79.23%), Postives = 570/703 (81.08%), Query Frame = 0 

Query: 1   MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
           NEAF  KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT NTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVKNGLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
           DLCG MNVKAR  FEYFISFIDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
           LRSDRGGEYMDLRFQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
               GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGST 420
           RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL+EDHMR+HKPRSKLVL+EATD ST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGLSSRVDQTTTS------------------------------------------ 480
           RVVDEVG SSRVD+TTTS                                          
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 ---------------------------------------------GCKWIYKRKRDSAGK 540
                                                        GCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG 600
           V TFKARLVAKGYTQRE VDYEETFSPVAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Sbjct: 773 VQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNG 832

Query: 601 NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEP 602
           NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEP
Sbjct: 833 NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP 892

[Close]
BLAST of Cmc09g0241221 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1058.1 bits (2735), Expect = 2.8e-305
Identity = 550/703 (78.24%), Postives = 567/703 (80.65%), Query Frame = 0 

Query: 1   MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
           NEAF  KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT NTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVK+GLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
           DLCG MNVKAR  FEYFISFIDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
            RSDRGGEYMDL FQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
               GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGST 420
           RSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFL+EDHMR+HKPRSKLVL+EATD ST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGLSSRVDQTTTS------------------------------------------ 480
           RVVDEVG SSRVD+TTTS                                          
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 ---------------------------------------------GCKWIYKRKRDSAGK 540
                                                        GCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG 600
           V TFKARLVAKGYT++E VDYEETFS VAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Sbjct: 773 VQTFKARLVAKGYTRKEGVDYEETFSSVAMLKSIRILLSIAKFYDYEIWQMDVKTAFLNG 832

Query: 601 NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEP 602
           NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEP
Sbjct: 833 NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP 892

[Close]
BLAST of Cmc09g0241221 vs. NCBI nr
Match: KAA0037509.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK01984.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 959.1 bits (2478), Expect = 1.7e-275
Identity = 479/501 (95.61%), Postives = 479/501 (95.61%), Query Frame = 0 

Query: 75  AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERL 134
           AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERL
Sbjct: 103 AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERL 162

Query: 135 VKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDF 194
           VKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDF
Sbjct: 163 VKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDF 222

Query: 195 EYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRF 254
           EYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRF
Sbjct: 223 EYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRF 282

Query: 255 QDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFE 314
           QDYMLKHEIQSQLSAPSTAQQNG            GYAVETAVYILNNVPSKSVSET FE
Sbjct: 283 QDYMLKHEIQSQLSAPSTAQQNG------------GYAVETAVYILNNVPSKSVSETHFE 342

Query: 315 LWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV 374
           LWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
Sbjct: 343 LWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV 402

Query: 375 STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS---------GC 434
           STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS         GC
Sbjct: 403 STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTSDLPEGVKPIGC 462

Query: 435 KWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYE 494
           KWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYE
Sbjct: 463 KWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYE 522

Query: 495 IWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTT 554
           IWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTT
Sbjct: 523 IWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTT 582

Query: 555 IKSYGFDQNVDEPCVYKKINK 567
           IKSYGFDQNVDEPCVYKKINK
Sbjct: 583 IKSYGFDQNVDEPCVYKKINK 591

[Close]
BLAST of Cmc09g0241221 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 866.3 bits (2237), Expect = 1.5e-247
Identity = 452/707 (63.93%), Postives = 512/707 (72.42%), Query Frame = 0 

Query: 1    MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
            MT++VGTG V+SA  VG  +L  +  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 335  MTMRVGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 394

Query: 61   NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
            N+ F  KNG  ICSAKLENNLYVLR   +KA+LN EMF+T  TQNKR +ISP  N +LWH
Sbjct: 395  NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 454

Query: 121  LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
            LRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HS
Sbjct: 455  LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 514

Query: 181  DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
            DLCG MNVKAR  FEYFI+F DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK 
Sbjct: 515  DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 574

Query: 241  LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
             RSDRGGEYMDL+FQ+Y+++  I SQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 575  FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 634

Query: 301  ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
                GYAV+TAVYILN VPSKSVSETP +LW  RK SL HFRIWGCPAHVL  NPKKLEP
Sbjct: 635  NSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEP 694

Query: 361  RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLN----EAT 420
            RS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH+R+HKPRSK+VLN    E T
Sbjct: 695  RSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETT 754

Query: 421  DGSTRVVDE---------VGLSSRVDQTTT------------------------------ 480
            + STRVV+E         VG S+R  Q  +                              
Sbjct: 755  EPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDG 814

Query: 481  ------------------------------------------------SGCKWIYKRKRD 540
                                                             GCKWIYKRKR 
Sbjct: 815  DIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRG 874

Query: 541  SAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT 600
            + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT 
Sbjct: 875  ADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTA 934

Query: 601  FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQN 602
            FLNGNLEE+I+M QPEGFI  GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ 
Sbjct: 935  FLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQI 994

[Close]
BLAST of Cmc09g0241221 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 866.3 bits (2237), Expect = 1.5e-247
Identity = 452/707 (63.93%), Postives = 512/707 (72.42%), Query Frame = 0 

Query: 1    MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
            MT++VGTG V+SA  VG  +L  +  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336  MTMRVGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61   NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
            N+ F  KNG  ICSAKLENNLYVLR   +KA+LN EMF+T  TQNKR +ISP  N +LWH
Sbjct: 396  NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121  LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
            LRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HS
Sbjct: 456  LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181  DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
            DLCG MNVKAR  FEYFI+F DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK 
Sbjct: 516  DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241  LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
             RSDRGGEYMDL+FQ+Y+++  I SQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 576  FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 635

Query: 301  ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
                GYAV+TAVYILN VPSKSVSETP +LW  RK SL HFRIWGCPAHVL  NPKKLEP
Sbjct: 636  NSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEP 695

Query: 361  RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLN----EAT 420
            RS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH+R+HKPRSK+VLN    E T
Sbjct: 696  RSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETT 755

Query: 421  DGSTRVVDE---------VGLSSRVDQTTT------------------------------ 480
            + STRVV+E         VG S+R  Q  +                              
Sbjct: 756  EPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDG 815

Query: 481  ------------------------------------------------SGCKWIYKRKRD 540
                                                             GCKWIYKRKR 
Sbjct: 816  DIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRG 875

Query: 541  SAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT 600
            + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT 
Sbjct: 876  ADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTA 935

Query: 601  FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQN 602
            FLNGNLEE+I+M QPEGFI  GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ 
Sbjct: 936  FLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQI 995

[Close]
BLAST of Cmc09g0241221 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.9e-81
Identity = 208/725 (28.69%), Postives = 335/725 (46.21%), Query Frame = 0 

Query: 6    GTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFT 65
            G GD+     VG T        + L+++  VP ++ NL+S   L    Y   F+ N+ + 
Sbjct: 334  GIGDICIKTNVGCT--------LVLKDVRHVPDLRMNLISGIALDRDGYESYFA-NQKWR 393

Query: 66   SKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTN--TQNKRQRISPNNNTYLWHLRL 125
               G+ +                AK V    ++RT     Q +        +  LWH R+
Sbjct: 394  LTKGSLVI---------------AKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRM 453

Query: 126  GHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLC 185
            GH++   ++ L K  L++  +  ++ PC+ CL GK  +  F     R    L+L++SD+C
Sbjct: 454  GHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVC 513

Query: 186  GSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRS 245
            G M +++    +YF++FIDD  R  ++Y+++ K +  + F+ + A VE    +K+K LRS
Sbjct: 514  GPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRS 573

Query: 246  DRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD--------------- 305
            D GGEY    F++Y   H I+ + + P T Q NGV+ER NRT+++               
Sbjct: 574  DNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSF 633

Query: 306  MGYAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCP--AHVLVTNPKKLEP 365
             G AV+TA Y++N  PS  ++ E P  +W  ++ S SH +++GC   AHV      KL+ 
Sbjct: 634  WGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDD 693

Query: 366  RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLN------- 425
            +S  C F+GY  E  G   +DP + +V  S +  F +E  +R     S+ V N       
Sbjct: 694  KSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFV 753

Query: 426  ---------EATDGSTRVVDEVG------------------------------------- 485
                      + + +T  V E G                                     
Sbjct: 754  TIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSE 813

Query: 486  -----------------------------------------LSSRVDQTTTSG------- 545
                                                     +   ++    +G       
Sbjct: 814  RPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVEL 873

Query: 546  --------CKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILL 601
                    CKW++K K+D   K+  +KARLV KG+ Q++ +D++E FSPV  + SIR +L
Sbjct: 874  PKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTIL 933

[Close]
BLAST of Cmc09g0241221 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 237.7 bits (605), Expect = 3.5e-61
Identity = 212/813 (26.08%), Postives = 331/813 (40.71%), Query Frame = 0 

Query: 8    GDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSK 67
            G+ I A   G  +L  +++ + LE++    +   NL+SV  L E   SI F  +    SK
Sbjct: 324  GEFIYATKRGIVRLRNDHE-ITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISK 383

Query: 68   NGAHIC-SAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHI 127
            NG  +  ++ + NN+          V+N + + + N ++K       NN  LWH R GHI
Sbjct: 384  NGLMVVKNSGMLNNV---------PVINFQAY-SINAKHK-------NNFRLWHERFGHI 443

Query: 128  N------LDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLELI 187
            +      + R        LLN LE  S   CE CL GK  + PF     +   K PL ++
Sbjct: 444  SDGKLLEIKRKNMFSDQSLLNNLEL-SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVV 503

Query: 188  HSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKI 247
            HSD+CG +     +D  YF+ F+D +  Y   YL+++KS     F+D+ A+ E   + K+
Sbjct: 504  HSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKV 563

Query: 248  KILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD---------- 307
              L  D G EY+    + + +K  I   L+ P T Q NGVSER  RT+ +          
Sbjct: 564  VYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAK 623

Query: 308  -----MGYAVETAVYILNNVPSKSV---SETPFELWRERKPSLSHFRIWGCPAHVLVTNP 367
                  G AV TA Y++N +PS+++   S+TP+E+W  +KP L H R++G   +V + N 
Sbjct: 624  LDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNK 683

Query: 368  K-KLEPRSRLCQFVGYPKETRGGLFFD--------------------------------- 427
            + K + +S    FVGY  E  G   +D                                 
Sbjct: 684  QGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLK 743

Query: 428  ----------PQENRVFVST----------NATFLKE----------------------- 487
                      P ++R  + T          N  FLK+                       
Sbjct: 744  DSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPN 803

Query: 488  --------DHMRDHKPRSKLVLNEA----------------------------------- 547
                      ++D K  +K  LNE+                                   
Sbjct: 804  ESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGI 863

Query: 548  -----------------------------TDGSTRVV---------------DEV----- 602
                                          D S   V               DE+     
Sbjct: 864  DNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDD 923

[Close]
BLAST of Cmc09g0241221 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.9e-51
Identity = 188/836 (22.49%), Postives = 313/836 (37.44%), Query Frame = 0 

Query: 5    VGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINF 64
            +  G  I     G   L   ++ + L  +  VP I +NL+SV  L          +  +F
Sbjct: 341  IADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASF 400

Query: 65   SMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYL 124
             + +  T   G  +   K ++ LY      ++AV    MF +  ++              
Sbjct: 401  QVKDLNT---GVPLLQGKTKDELYEWPIASSQAV---SMFASPCSKATHSS--------- 460

Query: 125  WHLRLGHINLDRIERLVKNGLLNELE-NDSLPPCESCLEGKMTKRPFTGKGYRAKEPLEL 184
            WH RLGH +L  +  ++ N  L  L  +  L  C  C   K  K PF+     + +PLE 
Sbjct: 461  WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 520

Query: 185  IHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKK 244
            I+SD+  S  + + +++ Y++ F+D + RY +LY ++ KS+  + F  +K+ VEN    +
Sbjct: 521  IYSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 580

Query: 245  IKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMG------- 304
            I  L SD GGE++ LR  DY+ +H I    S P T + NG+SER++R +++MG       
Sbjct: 581  IGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 640

Query: 305  --------YAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCPAHVLVT--N 364
                    YA   AVY++N +P+  +  ++PF+    + P+    +++GC  +  +   N
Sbjct: 641  SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYN 700

Query: 365  PKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF------------------- 424
              KLE +S+ C F+GY       L       R++ S +  F                   
Sbjct: 701  RHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQE 760

Query: 425  ------------------------------------------------------------ 484
                                                                        
Sbjct: 761  QRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSI 820

Query: 485  ------------------LKEDHMRDHKPRSKLVLNEATDGS------------------ 544
                                + H   +   +  +LN     S                  
Sbjct: 821  SSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPIS 880

Query: 545  ---------------------------------------------------TRVVDEV-- 601
                                                               TR  D +  
Sbjct: 881  SPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRK 940

[Close]
BLAST of Cmc09g0241221 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.4e-51
Identity = 187/832 (22.48%), Postives = 312/832 (37.50%), Query Frame = 0 

Query: 5    VGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINF 64
            V  G  I     G T L  +++ + L N+  VP I +NL+SV  L          +  +F
Sbjct: 362  VADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASF 421

Query: 65   SMNEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYL 124
             + +  T   G  +   K ++ LY      ++ V    +F + +++              
Sbjct: 422  QVKDLNT---GVPLLQGKTKDELYEWPIASSQPV---SLFASPSSKATHSS--------- 481

Query: 125  WHLRLGHINLDRIERLVKNGLLNELE-NDSLPPCESCLEGKMTKRPFTGKGYRAKEPLEL 184
            WH RLGH     +  ++ N  L+ L  +     C  CL  K  K PF+     +  PLE 
Sbjct: 482  WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 541

Query: 185  IHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKK 244
            I+SD+  S  + + +++ Y++ F+D + RY +LY ++ KS+  E F  +K  +EN    +
Sbjct: 542  IYSDVWSS-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 601

Query: 245  IKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMG------- 304
            I    SD GGE++ L   +Y  +H I    S P T + NG+SER++R +++ G       
Sbjct: 602  IGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 661

Query: 305  --------YAVETAVYILNNVPSKSVS-ETPFELWRERKPSLSHFRIWGCPAHVLVT--N 364
                    YA   AVY++N +P+  +  E+PF+      P+    R++GC  +  +   N
Sbjct: 662  SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYN 721

Query: 365  PKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF------------------- 424
              KL+ +SR C F+GY       L    Q +R+++S +  F                   
Sbjct: 722  QHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQE 781

Query: 425  --------------------------LKEDH----------------------------- 484
                                        + H                             
Sbjct: 782  QRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSS 841

Query: 485  ------------------------------------------------------------ 544
                                                                        
Sbjct: 842  SFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSS 901

Query: 545  ----------------------------------------MRDH-------------KPR 601
                                                    +  H              P+
Sbjct: 902  SSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK 961

[Close]
BLAST of Cmc09g0241221 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.0e-15
Identity = 77/293 (26.28%), Postives = 128/293 (43.69%), Query Frame = 0 

Query: 11  ISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFTSKNGA 70
           I    +G+    F+N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  HICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +  S N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSK--SVNKYPYPLIHRMLGHANFR 609

Query: 131 RIERLVKNGLLN-------ELENDSLPPCESCLEGKMTKRPFTGKGYRAK-----EPLEL 190
            I++ +K   +        E  N S   C  CL GK TK     KG R K     EP + 
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSRLKYQESYEPFQY 669

Query: 191 IHSDLCGSMNVKAREDFEYFISFIDDYLRYGYLYLM--EHKSKALEKFKDYKAEVENLLS 250
           +H+D+ G ++   +    YFISF D+  R+ ++Y +    +   L  F    A ++N  +
Sbjct: 670 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFN 729

Query: 251 KKIKILRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLD 289
            ++ +++ DRG EY +     +     I +  +  + ++ +GV+ER NRTLL+
Sbjct: 730 ARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLN 776

[Close]
BLAST of Cmc09g0241221 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 1072.4 bits (2772), Expect = 6.7e-310
Identity = 557/703 (79.23%), Postives = 570/703 (81.08%), Query Frame = 0 

Query: 1   MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
           NEAF  KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT NTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVKNGLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
           DLCG MNVKAR  FEYFISFIDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
           LRSDRGGEYMDLRFQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
               GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGST 420
           RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFL+EDHMR+HKPRSKLVL+EATD ST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGLSSRVDQTTTS------------------------------------------ 480
           RVVDEVG SSRVD+TTTS                                          
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 ---------------------------------------------GCKWIYKRKRDSAGK 540
                                                        GCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG 600
           V TFKARLVAKGYTQRE VDYEETFSPVAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Sbjct: 773 VQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNG 832

Query: 601 NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEP 602
           NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEP
Sbjct: 833 NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP 892

[Close]
BLAST of Cmc09g0241221 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 1058.1 bits (2735), Expect = 1.3e-305
Identity = 550/703 (78.24%), Postives = 567/703 (80.65%), Query Frame = 0 

Query: 1   MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISAR VGD KLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
           NEAF  KNG HICSAKLENNLYVLRPNEAKAVLNHEMFRT NTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVK+GLLN+L++ SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
           DLCG MNVKAR  FEYFISFIDDY RYGYLYLMEHKS+ALEKFK+YK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
            RSDRGGEYMDL FQDYM++H IQSQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
               GYAVETAV+ILNNVPSKSVSETPFELWR RKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLNEATDGST 420
           RSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFL+EDHMR+HKPRSKLVL+EATD ST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGLSSRVDQTTTS------------------------------------------ 480
           RVVDEVG SSRVD+TTTS                                          
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 ---------------------------------------------GCKWIYKRKRDSAGK 540
                                                        GCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTTFLNG 600
           V TFKARLVAKGYT++E VDYEETFS VAMLKSIRILLSIA FYDYEIWQMDVKT FLNG
Sbjct: 773 VQTFKARLVAKGYTRKEGVDYEETFSSVAMLKSIRILLSIAKFYDYEIWQMDVKTAFLNG 832

Query: 601 NLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQNVDEP 602
           NLEESIFMSQPEGFITQGQEQKVCKLN SIY LKQASRS NIRFDT IKSYGFDQNVDEP
Sbjct: 833 NLEESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP 892

[Close]
BLAST of Cmc09g0241221 vs. ExPASy TrEMBL
Match: A0A5A7T820 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00930 PE=4 SV=1)

HSP 1 Score: 959.1 bits (2478), Expect = 8.5e-276
Identity = 479/501 (95.61%), Postives = 479/501 (95.61%), Query Frame = 0 

Query: 75  AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERL 134
           AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERL
Sbjct: 103 AKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWHLRLGHINLDRIERL 162

Query: 135 VKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDF 194
           VKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDF
Sbjct: 163 VKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGSMNVKAREDF 222

Query: 195 EYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRF 254
           EYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRF
Sbjct: 223 EYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKILRSDRGGEYMDLRF 282

Query: 255 QDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDMGYAVETAVYILNNVPSKSVSETPFE 314
           QDYMLKHEIQSQLSAPSTAQQNG            GYAVETAVYILNNVPSKSVSET FE
Sbjct: 283 QDYMLKHEIQSQLSAPSTAQQNG------------GYAVETAVYILNNVPSKSVSETHFE 342

Query: 315 LWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV 374
           LWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV
Sbjct: 343 LWRERKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFV 402

Query: 375 STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS---------GC 434
           STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTS         GC
Sbjct: 403 STNATFLKEDHMRDHKPRSKLVLNEATDGSTRVVDEVGLSSRVDQTTTSDLPEGVKPIGC 462

Query: 435 KWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYE 494
           KWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYE
Sbjct: 463 KWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYE 522

Query: 495 IWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTT 554
           IWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTT
Sbjct: 523 IWQMDVKTTFLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTT 582

Query: 555 IKSYGFDQNVDEPCVYKKINK 567
           IKSYGFDQNVDEPCVYKKINK
Sbjct: 583 IKSYGFDQNVDEPCVYKKINK 591

[Close]
BLAST of Cmc09g0241221 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 866.3 bits (2237), Expect = 7.5e-248
Identity = 452/707 (63.93%), Postives = 512/707 (72.42%), Query Frame = 0 

Query: 1    MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
            MT++VGTG V+SA  VG  +L  +  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336  MTMRVGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61   NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
            N+ F  KNG  ICSAKLENNLYVLR   +KA+LN EMF+T  TQNKR +ISP  N +LWH
Sbjct: 396  NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121  LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
            LRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HS
Sbjct: 456  LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181  DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
            DLCG MNVKAR  FEYFI+F DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK 
Sbjct: 516  DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241  LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
             RSDRGGEYMDL+FQ+Y+++  I SQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 576  FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 635

Query: 301  ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
                GYAV+TAVYILN VPSKSVSETP +LW  RK SL HFRIWGCPAHVL  NPKKLEP
Sbjct: 636  NSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEP 695

Query: 361  RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLN----EAT 420
            RS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH+R+HKPRSK+VLN    E T
Sbjct: 696  RSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETT 755

Query: 421  DGSTRVVDE---------VGLSSRVDQTTT------------------------------ 480
            + STRVV+E         VG S+R  Q  +                              
Sbjct: 756  EPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDG 815

Query: 481  ------------------------------------------------SGCKWIYKRKRD 540
                                                             GCKWIYKRKR 
Sbjct: 816  DIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRG 875

Query: 541  SAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT 600
            + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT 
Sbjct: 876  ADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTA 935

Query: 601  FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQN 602
            FLNGNLEE+I+M QPEGFI  GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ 
Sbjct: 936  FLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQI 995

[Close]
BLAST of Cmc09g0241221 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 866.3 bits (2237), Expect = 7.5e-248
Identity = 452/707 (63.93%), Postives = 512/707 (72.42%), Query Frame = 0 

Query: 1    MTLKVGTGDVISARVVGDTKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
            MT++VGTG V+SA  VG  +L  +  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++
Sbjct: 336  MTMRVGTGHVVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNV 395

Query: 61   NEAFTSKNGAHICSAKLENNLYVLRPNEAKAVLNHEMFRTTNTQNKRQRISPNNNTYLWH 120
            N+ F  KNG  ICSAKLENNLYVLR   +KA+LN EMF+T  TQNKR +ISP  N +LWH
Sbjct: 396  NKVFIYKNGVEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWH 455

Query: 121  LRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
            LRLGHINL+RIERLVKNGLL+ELE +SLP CESCLEGKMTKRPFTGKG+RAKEPLEL+HS
Sbjct: 456  LRLGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHS 515

Query: 181  DLCGSMNVKAREDFEYFISFIDDYLRYGYLYLMEHKSKALEKFKDYKAEVENLLSKKIKI 240
            DLCG MNVKAR  FEYFI+F DDY RYGY+YLM+HKS+ALEKFK+YKAEVEN LSK IK 
Sbjct: 516  DLCGPMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKT 575

Query: 241  LRSDRGGEYMDLRFQDYMLKHEIQSQLSAPSTAQQNGVSERRNRTLLDM----------- 300
             RSDRGGEYMDL+FQ+Y+++  I SQLSAP T QQNGVSERRNRTLLDM           
Sbjct: 576  FRSDRGGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLP 635

Query: 301  ----GYAVETAVYILNNVPSKSVSETPFELWRERKPSLSHFRIWGCPAHVLVTNPKKLEP 360
                GYAV+TAVYILN VPSKSVSETP +LW  RK SL HFRIWGCPAHVL  NPKKLEP
Sbjct: 636  NSFWGYAVQTAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEP 695

Query: 361  RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLKEDHMRDHKPRSKLVLN----EAT 420
            RS+LC FVGYPK TRGG F+DP++N+VFVSTNATFL+EDH+R+HKPRSK+VLN    E T
Sbjct: 696  RSKLCLFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETT 755

Query: 421  DGSTRVVDE---------VGLSSRVDQTTT------------------------------ 480
            + STRVV+E         VG S+R  Q  +                              
Sbjct: 756  EPSTRVVEEPSALTRVVHVGSSTRTHQPQSLREPRRSGRVTNLPIRYMSLTETLTVISDG 815

Query: 481  ------------------------------------------------SGCKWIYKRKRD 540
                                                             GCKWIYKRKR 
Sbjct: 816  DIEDPLTFKKAMEDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRG 875

Query: 541  SAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYDYEIWQMDVKTT 600
            + GKV TFKARLVAKGYTQ E VDYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKT 
Sbjct: 876  ADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTA 935

Query: 601  FLNGNLEESIFMSQPEGFITQGQEQKVCKLNLSIYALKQASRSLNIRFDTTIKSYGFDQN 602
            FLNGNLEE+I+M QPEGFI  GQEQK+CKLN SIY LKQASRS NIRFDT IKSYGFDQ 
Sbjct: 936  FLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQI 995

[Close]
BLAST of Cmc09g0241221 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-36
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 0 

Query: 424 GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIAIFYD 483
           GCKW+YK K +S G +  +KARLVAKGYTQ+E +D+ ETFSPV  L S++++L+I+  Y+
Sbjct: 128 GCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYN 187

Query: 484 YEIWQMDVKTTFLNGNLEESIFMSQPEGFIT-QGQE---QKVCKLNLSIYALKQASRSLN 543
           + + Q+D+   FLNG+L+E I+M  P G+   QG       VC L  SIY LKQASR   
Sbjct: 188 FTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWF 247

Query: 544 IRFDTTIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIRNNVRYLTDVKTWLAAQ 602
           ++F  T+  +GF Q+  +   + KI       +++YVDDI++  NN   + ++K+ L + 
Sbjct: 248 LKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSC 307

[Close]
BLAST of Cmc09g0241221 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-09
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 114 NNTYLWHLRLGHINLDRIERLVKNGLLNELENDSLPPCESCLEGKMTKRPFTGKGYRAKE 173
           + T LWH RL H++   +E LVK G L+  +  SL  CE C+ GK  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 174 PLELIHSDLCGSMNV 189
           PL+ +HSDL G+ +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

[Close]
BLAST of Cmc09g0241221 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-09
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 424 GCKWIYKRKRDSAGKVHTFKARLVAKGYTQREWVDYEETFSPVAMLKSIRILLSIA 480
           GCKW++K K  S G +   KARLVAKG+ Q E + + ET+SPV    +IR +L++A
Sbjct: 70  GCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:
BLAST of Cmc09g0241221 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025945.11.4e-30979.23gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi... [more]
KAA0035907.12.8e-30578.24gag/pol protein [Cucumis melo var. makuwa][more]
KAA0037509.11.7e-27595.61gag/pol protein [Cucumis melo var. makuwa] >TYK01984.1 gag/pol protein [Cucumis ... [more]
KAA0048404.11.5e-24763.93gag/pol protein [Cucumis melo var. makuwa][more]
TYK14550.11.5e-24763.93gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc09g0241221 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109788.9e-8128.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.5e-6126.08Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT941.9e-5122.49Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW27.4e-5122.48Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q124915.0e-1526.28Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of Cmc09g0241221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TZD06.7e-31079.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
A0A5A7T2V91.3e-30578.24Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760... [more]
A0A5A7T8208.5e-27695.61Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G0093... [more]
A0A5A7SMH87.5e-24863.93Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ67.5e-24863.93Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
BLAST of Cmc09g0241221 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.11.8e-3641.76cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00300.11.9e-0940.00Gag-Pol-related retrotransposon family protein [more]
ATMG00820.15.5e-0948.21Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 216..236
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 385..591
coord: 112..391
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 167..328
e-value: 3.5E-30
score: 106.8
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 105..159
e-value: 1.2E-13
score: 50.7
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 422..601
e-value: 1.1E-50
score: 172.6
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 170..340
score: 16.768711
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 174..328

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0241221.1Cmc09g0241221.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding