Cmc05g0135251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 17304987 .. 17305349 (-)
RNA-Seq Expression	Cmc05g0135251
Synteny	Cmc05g0135251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGTACCGAAGACAGGCTTTTGGTTTGACGAATACCCCGGCAGTGTTTATGGATTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCATGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGAAGCGTTTACGAATGGTTCTACAAACCCTTCGAGATAATACATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGTTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGTAGCTTTCTGGGTTAG

mRNA sequence

ATGGTGATGTACCGAAGACAGGCTTTTGGTTTGACGAATACCCCGGCAGTGTTTATGGATTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCATGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGAAGCGTTTACGAATGGTTCTACAAACCCTTCGAGATAATACATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGTTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGTAGCTTTCTGGGTTAG

Coding sequence (CDS)

ATGGTGATGTACCGAAGACAGGCTTTTGGTTTGACGAATACCCCGGCAGTGTTTATGGATTTGATGAATAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCATGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGAAGCGTTTACGAATGGTTCTACAAACCCTTCGAGATAATACATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGTTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGTAGCTTTCTGGGTTAG

Protein sequence

MVMYRRQAFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTLYAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG

Homology

[Close]

BLAST of Cmc05g0135251 vs. NCBI nr
Match: TYK07886.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN L
Sbjct: 459 SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKL 518

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQ+SFLGHVVSK GVSVDP KIEAVTSWPRPSTV+EV SFLG
Sbjct: 519 YAKFSKCEFWLKQMSFLGHVVSKAGVSVDPVKIEAVTSWPRPSTVSEVRSFLG 571

[Close]

BLAST of Cmc05g0135251 vs. NCBI nr
Match: KAA0067899.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN  
Sbjct: 455 SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKF 514

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVS+DPAKIEAVTSWPRPSTV+EV SFLG
Sbjct: 515 YAKFSKCEFWLKQVSFLGHVVSKAGVSMDPAKIEAVTSWPRPSTVSEVRSFLG 567

[Close]

BLAST of Cmc05g0135251 vs. NCBI nr
Match: KAA0046049.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 7.8e-50
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN L
Sbjct: 343 SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKL 402

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTSW RPSTV+EV SFLG
Sbjct: 403 YAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLG 455

[Close]

BLAST of Cmc05g0135251 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 7.8e-50
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN L
Sbjct: 74  SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKL 133

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTSW RPSTV+EV SFLG
Sbjct: 134 YAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLG 186

[Close]

BLAST of Cmc05g0135251 vs. NCBI nr
Match: KAA0059783.1 (pol protein [Cucumis melo var. makuwa] >TYJ99795.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-49
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMN+VFREFLDTFVI+FIDDILIYSK EAEHE+ LRMVLQTLRDN L
Sbjct: 74  SFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKIEAEHEEHLRMVLQTLRDNKL 133

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTSWPRPSTV+EV SFLG
Sbjct: 134 YAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLG 186

[Close]

BLAST of Cmc05g0135251 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-20
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 4   YRRQAFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLR 63
           Y R  FGL N PA F   MN + R  L+   ++++DDI+I+S +  EH   +++V   L 
Sbjct: 330 YLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLA 389

Query: 64  DNTLYAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+P P+   E+ +FLG
Sbjct: 390 DANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLG 446

[Close]

BLAST of Cmc05g0135251 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-18
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 4   YRRQAFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLR 63
           Y R  FGL N PA F   MN + R  L+   ++++DDI+++S +  EH + L +V + L 
Sbjct: 331 YLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLA 390

Query: 64  DNTLYAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
              L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +P P+   E+ +FLG
Sbjct: 391 KANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLG 447

[Close]

BLAST of Cmc05g0135251 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 4   YRRQAFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLR 63
           + R  FGL N PA+F  +++ + RE +     ++IDDI+++S+    H K LR+VL +L 
Sbjct: 247 FLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLS 306

Query: 64  DNTLYAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
              L     K  F   QV FLG++V+  G+  DP K+ A++  P P++V E+  FLG
Sbjct: 307 KANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLG 363

[Close]

BLAST of Cmc05g0135251 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 6   RQAFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDN 65
           R  FGL N  ++F   ++ V RE +     +++DD++I+S+ E++H + +  VL+ L D 
Sbjct: 308 RLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDA 367

Query: 66  TLYAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
            +     K  F+ + V +LG +VSK G   DP K++A+  +P P  V +V SFLG
Sbjct: 368 NMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLG 422

[Close]

BLAST of Cmc05g0135251 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-16
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 4   YRRQAFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLR 63
           Y    +G++  PA F   +N +  E  ++ V+ ++DDILI+SK+E+EH K ++ VLQ L+
Sbjct: 531 YLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLK 590

Query: 64  DNTLYAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           +  L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+  FLG
Sbjct: 591 NANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLG 647

[Close]

BLAST of Cmc05g0135251 vs. ExPASy TrEMBL
Match: A0A5A7VRW0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00600 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN  
Sbjct: 455 SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKF 514

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVS+DPAKIEAVTSWPRPSTV+EV SFLG
Sbjct: 515 YAKFSKCEFWLKQVSFLGHVVSKAGVSMDPAKIEAVTSWPRPSTVSEVRSFLG 567

[Close]

BLAST of Cmc05g0135251 vs. ExPASy TrEMBL
Match: A0A5D3CBZ8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1748G00030 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN L
Sbjct: 459 SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKL 518

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQ+SFLGHVVSK GVSVDP KIEAVTSWPRPSTV+EV SFLG
Sbjct: 519 YAKFSKCEFWLKQMSFLGHVVSKAGVSVDPVKIEAVTSWPRPSTVSEVRSFLG 571

[Close]

BLAST of Cmc05g0135251 vs. ExPASy TrEMBL
Match: A0A5A7TXS2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006230 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.8e-50
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN L
Sbjct: 343 SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKL 402

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTSW RPSTV+EV SFLG
Sbjct: 403 YAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLG 455

[Close]

BLAST of Cmc05g0135251 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.8e-50
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMNRVFREFLDTFVI+FIDDILIYSKTEAEHE+ LRMVLQTLRDN L
Sbjct: 74  SFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKL 133

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTSW RPSTV+EV SFLG
Sbjct: 134 YAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLG 186

[Close]

BLAST of Cmc05g0135251 vs. ExPASy TrEMBL
Match: A0A5A7UV33 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00410 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.9e-50
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 8   AFGLTNTPAVFMDLMNRVFREFLDTFVIMFIDDILIYSKTEAEHEKRLRMVLQTLRDNTL 67
           +FGLTN PAVFMDLMN+VFREFLDTFVI+FIDDILIYSK EAEHE+ LRMVLQTLRDN L
Sbjct: 74  SFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKIEAEHEEHLRMVLQTLRDNKL 133

Query: 68  YAKFSKCEFWLKQVSFLGHVVSKVGVSVDPAKIEAVTSWPRPSTVNEVCSFLG 121
           YAKFSKCEFWLKQVSFLGHVVSK GVSVDPAKIEAVTSWPRPSTV+EV SFLG
Sbjct: 134 YAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLG 186

[Close]

BLAST of Cmc05g0135251 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-11
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 55  LRMVLQTLRDNTLYAKFSKCEFWLKQVSFLG--HVVSKVGVSVDPAKIEAVTSWPRPSTV 114
           L MVLQ    +  YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P   
Sbjct: 4   LGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNT 63

Query: 115 NEVCSFLG 121
            E+  FLG
Sbjct: 64  TELRGFLG 71

The following BLAST results are available for this feature:

BLAST of Cmc05g0135251 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07886.1	5.9e-50	90.27	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067899.1	5.9e-50	90.27	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046049.1	7.8e-50	91.15	pol protein [Cucumis melo var. makuwa]	[more]
KAA0042119.1	7.8e-50	91.15	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059783.1	1.0e-49	90.27	pol protein [Cucumis melo var. makuwa] >TYJ99795.1 pol protein [Cucumis melo var...	[more]

BLAST of Cmc05g0135251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.9e-20	38.46	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.6e-18	37.61	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.4e-17	36.75	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	7.6e-16	34.78	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	7.6e-16	35.90	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc05g0135251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VRW0	2.9e-50	90.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CBZ8	2.9e-50	90.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TXS2	3.8e-50	91.15	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7TLA3	3.8e-50	91.15	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7UV33	4.9e-50	90.27	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00410 PE...	[more]

BLAST of Cmc05g0135251 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.8e-11	45.59	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 8..87 e-value: 3.9E-15 score: 56.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..88 score: 9.265099
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..92 e-value: 2.0E-33 score: 117.1
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 21..120
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 21..120
None	No IPR available	CDD	cd01647	RT_LTR	coord: 4..88 e-value: 2.54007E-36 score: 120.008
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0135251.1	Cmc05g0135251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding