MELO3C035021.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C035021.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 15829835 .. 15830026 (+)
Sequence length	192
RNA-Seq Expression	MELO3C035021.1
Synteny	MELO3C035021.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAATCTCGTAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCGCCGCATCTGGAGCAAATTCCAGGCGCCGGCCTACTCCGCCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTCGTCCTCGGAGCTTTGTTGGTTGGGAATGAAAACTATGGGCTCAGTGAGGAGTAG

mRNA sequence

ATGACAGAATCTCGTAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCGCCGCATCTGGAGCAAATTCCAGGCGCCGGCCTACTCCGCCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTCGTCCTCGGAGCTTTGTTGGTTGGGAATGAAAACTATGGGCTCAGTGAGGAGTAG

Coding sequence (CDS)

ATGACAGAATCTCGTAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCGCCGCATCTGGAGCAAATTCCAGGCGCCGGCCTACTCCGCCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTCGTCCTCGGAGCTTTGTTGGTTGGGAATGAAAACTATGGGCTCAGTGAGGAGTAG

Protein sequence

MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGLSEE

Homology

[Close]

BLAST of MELO3C035021.1 vs. NCBI nr
Match: KAA0047885.1 (hypothetical protein E6C27_scaffold133G001590 [Cucumis melo var. makuwa] >TYK02164.1 hypothetical protein E5676_scaffold388G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60
          MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL
Sbjct: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60

Query: 61 SEE 64
          SEE
Sbjct: 61 SEE 63

[Close]

BLAST of MELO3C035021.1 vs. NCBI nr
Match: TKY48832.1 (Notchless protein-like [Spatholobus suberectus])

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-04
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 9  HIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENH--GVVL 49
          H+G+AGS+AA+GAN RRR  PPHLP L+H K + +H  GVVL
Sbjct: 35 HVGDAGSAAAAGANPRRRLAPPHLPPLVHQKTEAHHLAGVVL 76

[Close]

BLAST of MELO3C035021.1 vs. ExPASy TrEMBL
Match: A0A5D3BSN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00560 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.8e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60
          MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL
Sbjct: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60

Query: 61 SEE 64
          SEE
Sbjct: 61 SEE 63

[Close]

BLAST of MELO3C035021.1 vs. ExPASy TrEMBL
Match: A0A0A0KAZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124130 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60
          MTES SGFHIGNAGSS ASGANSR RPT  HLPLLIHHKAKENHGVV+GA LVGNE   +
Sbjct: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60

Query: 61 SE 63
          SE
Sbjct: 61 SE 62

The following BLAST results are available for this feature:

BLAST of MELO3C035021.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035021.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047885.1	1.4e-26	100.00	hypothetical protein E6C27_scaffold133G001590 [Cucumis melo var. makuwa] >TYK021...	[more]
TKY48832.1	5.8e-04	61.90	Notchless protein-like [Spatholobus suberectus]	[more]

BLAST of MELO3C035021.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSN7	6.8e-27	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAZ7	1.5e-18	82.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124130 PE=4 SV=1	[more]

BLAST of MELO3C035021.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035021	MELO3C035021	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035021.1:exon:323826	MELO3C035021.1:exon:323826	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035021.1:cds	MELO3C035021.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035021.1	MELO3C035021.1-protein	polypeptide