Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACTTCAAGATGCTACTCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA
mRNA sequence
ATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACTTCAAGATGCTACTCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA
Coding sequence (CDS)
ATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACTTCAAGATGCTACTCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA
Protein sequence
MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCSIILQENR
Homology
BLAST of MELO3C027530 vs. NCBI nr
Match:
KAA0065892.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 173 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 232
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLE IPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 233 AEWPILQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 292
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 293 YCSIILQENR 302
BLAST of MELO3C027530 vs. NCBI nr
Match:
KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLMETRTARVSERRNVSS SKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 169 MYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHRI 228
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQ+IVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 229 AEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 288
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 289 YCSIILQENR 298
BLAST of MELO3C027530 vs. NCBI nr
Match:
KAA0041028.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLME RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1 MYSPGLNMSPDDLMEIRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRI MRNVDDMKAFLEVPDNMKYP
Sbjct: 61 AEWPILQHQDATQTRQEIVRQLEAIPELTLMDRCRLMRIFMRNVDDMKAFLEVPDNMKYP 120
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 121 YCSIILQENR 130
BLAST of MELO3C027530 vs. NCBI nr
Match:
KAA0054687.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYS GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1 MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 61 AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
Query: 121 YCSIILQENR 131
YC+IILQENR
Sbjct: 121 YCNIILQENR 130
BLAST of MELO3C027530 vs. NCBI nr
Match:
KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLMETRTARVSERRNVSSGSK KRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 125 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNEQLHRI 184
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRI+MRNVDDMKAFL+VPDNMKYP
Sbjct: 185 AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLKVPDNMKYP 244
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 245 YCSIILQENR 254
BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match:
A0A5A7VC47 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00690 PE=4 SV=1)
HSP 1 Score: 256.5 bits (654), Expect = 5.9e-65
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 173 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 232
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLE IPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 233 AEWPILQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 292
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 293 YCSIILQENR 302
BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match:
A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLMETRTARVSERRNVSS SKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 169 MYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHRI 228
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQ+IVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 229 AEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 288
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 289 YCSIILQENR 298
BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match:
A0A5A7TDI5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31351G00010 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYSPGLNMSPDDLME RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1 MYSPGLNMSPDDLMEIRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRI MRNVDDMKAFLEVPDNMKYP
Sbjct: 61 AEWPILQHQDATQTRQEIVRQLEAIPELTLMDRCRLMRIFMRNVDDMKAFLEVPDNMKYP 120
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 121 YCSIILQENR 130
BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match:
A0A5A7UJB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005120 PE=4 SV=1)
HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYS GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1 MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 61 AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
Query: 121 YCSIILQENR 131
YC+IILQENR
Sbjct: 121 YCNIILQENR 130
BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 252.7 bits (644), Expect = 8.5e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0
Query: 1 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
MYS GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 515 MYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 574
Query: 61 AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
AEWPILQ QDATQTRQEIV+QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 575 AEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 634
Query: 121 YCSIILQENR 131
YCSIILQENR
Sbjct: 635 YCSIILQENR 644
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VC47 | 5.9e-65 | 98.46 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7VF53 | 3.8e-64 | 97.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TDI5 | 3.8e-64 | 97.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UJB1 | 5.0e-64 | 97.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SWD8 | 8.5e-64 | 97.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
