MELO3C020727 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020727
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr08: 25424609 .. 25425973 (+)
RNA-Seq Expression	MELO3C020727
Synteny	MELO3C020727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACTTTCAAATCCATGTGAGCGAATGGATCTCTTTCTTGGTAACGCGATCTGAGGTAAAATATCCGAAGCCACCAGCCCGAAAGCCGAAAAAAACTTCTCGTCCCCGCTCAACACATAATCCAAATGGAACTCCCATCAAACGTCCTGACTGGTCAGAAGTTGAACTCAATCTATTCCTTGATTTAGGCGTTGCAGAAGAACACAAGGATAAAACCTATCTGGCGGCATTTCTCTCTTGCTAGCTGTGTGTGTTTGTGTTTCCTGACAAACAAAATTCCCTTCGTCCGGAGGTTTTTAAAGTTGCTAGCCTTATGGCAGAAGGCGACACCTTTAGCCTTGCTATCCCTATTCTAGCCAATATTTATAGCGGCCTACGCCAGATTCATGATTGTACTTCATCACTTGGTCATTCTAATGCATGTTTTCCTATTCACTATGTTCATGGGTGGCTTGCCCTTTACTTCAACACCTATTATAAGGCCCCTACTAGTCTTAGGGGTCCCCGTATGGTTGAGTTTTCCGGTGAAGGTGGGGCCAAATACTATACTAATCTTGAGGCTCGTACGCATATTCACATGGAAAAGTATGTATCATGGCACGCGTGTCTTCAAGCAAAAAATAAAGATGAACTCTTAACGGATGATGGAACATTAATTCATTGGAATGCTTCATTCTTTATAAGCATTCGCTTTTGTTTTCTATTCTCACAATATGGATCCTCTACGGTTATTGAACCTTATAGTCCTTGTCGTTTTGGCCGACAGTTTGGTTTTTATCAAGACGTGCCGTATGATTTAGGCAAGAAAATTCCCAAAGCTAATCTTGCCAACGTACGCTATCATTGGATGATTTGTGTCCGCGAGAGCACGCTTTCCTAAGTATACCTTCTTGCGCCTACCCTCCACCCGTGCAACCATCTTACGTTGCACTATAAGACTTGGTGGCTTGCAAAACACGGTGATTACCTTCAAGACGGATTGCAAAATTTGATAGATCGTCTCACTCCCCTTCTTATCAAATCCAAAACCACTAAGAAAATTGAGCATAATCCTGATAGCGGAAATAAAAAAATATGCTCCTCTAAACTTGAGGAACAACCCGTGGAGAAGGCTAAGAAAGGTACAAAATGTCTTGTAGCTACTTCGACCCCTTCTGCACAATTTAAATTTGCTGCTAGAAGTGTCGCTAACAATGTGCGTAAGGATCTTCTCATATTGACAACCGGCAAACGTCCTTCTACACATACTGAAGATAGCCACAGCAGCAATGATGATCATCATTGGAAGAGACCCAAAAGGCCTGACAAACAATCAATTGATGATGAAAAGCCTCCTATTGAAGTTCTCGACGTTGCATAG

mRNA sequence

ATGGATCACTTTCAAATCCATGTGAGCGAATGGATCTCTTTCTTGGTAACGCGATCTGAGGTAAAATATCCGAAGCCACCAGCCCGAAAGCCGAAAAAAACTTCTCGTCCCCGCTCAACACATAATCCAAATGGAACTCCCATCAAACGTCCTGACTGGTCAGAAGTTGAACTCAATCTATTCCTTGATTTAGGCGTTGCAGAAGAACACAAGGATAAAACCTATCTGGCGGCATTTCTCTCTTGCTAGCTGTGTGTGTTTGTGTTTCCTGACAAACAAAATTCCCTTCGTCCGGAGGTTTTTAAAGTTGCTAGCCTTATGGCAGAAGGCGACACCTTTAGCCTTGCTATCCCTATTCTAGCCAATATTTATAGCGGCCTACGCCAGATTCATGATTGTACTTCATCACTTGGTCATTCTAATGCATGTTTTCCTATTCACTATGTTCATGGGTGGCTTGCCCTTTACTTCAACACCTATTATAAGGCCCCTACTAGTCTTAGGGGTCCCCGTATGGTTGAGTTTTCCGGTGAAGGCTAATCTTGCCAACGTACGCTATCATTGGATGATTTGTGTCCGCGAGAGCACGCTTTCCTAAGTATACCTTCTTGCGCCTACCCTCCACCCGTGCAACCATCTTACGTTGCACTATAAGACTTGGTGGCTTGCAAAACACGGTGATTACCTTCAAGACGGATTGCAAAATTTGATAGATCGTCTCACTCCCCTTCTTATCAAATCCAAAACCACTAAGAAAATTGAGCATAATCCTGATAGCGGAAATAAAAAAATATGCTCCTCTAAACTTGAGGAACAACCCGTGGAGAAGGCTAAGAAAGGTACAAAATGTCTTGTAGCTACTTCGACCCCTTCTGCACAATTTAAATTTGCTGCTAGAAGTGTCGCTAACAATGTGCGTAAGGATCTTCTCATATTGACAACCGGCAAACGTCCTTCTACACATACTGAAGATAGCCACAGCAGCAATGATGATCATCATTGGAAGAGACCCAAAAGGCCTGACAAACAATCAATTGATGATGAAAAGCCTCCTATTGAAGTTCTCGACGTTGCATAG

Coding sequence (CDS)

ATGGATCACTTTCAAATCCATGTGAGCGAATGGATCTCTTTCTTGGTAACGCGATCTGAGGTAAAATATCCGAAGCCACCAGCCCGAAAGCCGAAAAAAACTTCTCGTCCCCGCTCAACACATAATCCAAATGGAACTCCCATCAAACGTCCTGACTGGTCAGAAGTTGAACTCAATCTATTCCTTGATTTAGGCGTTGCAGAAGAACACAAGGATAAAACCTATCTGGCGGCATTTCTCTCTTGCTAG

Protein sequence

MDHFQIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDLGVAEEHKDKTYLAAFLSC

Homology

[Close]

BLAST of MELO3C020727 vs. NCBI nr
Match: KAA0062705.1 (uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa] >TYK20603.1 uncharacterized protein E5676_scaffold132G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 74/82 (90.24%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MDHFQIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNL 60
          MDHFQI VS+WISF VTRSEVKYPKPP RKPKKTSRPRSTHNPNGTPIKR DWSEVELNL
Sbjct: 1  MDHFQIPVSKWISFWVTRSEVKYPKPPVRKPKKTSRPRSTHNPNGTPIKRLDWSEVELNL 60

Query: 61 FLDLGVAEEHKDKTYLAAFLSC 83
          FLDLGV EEHKDKTYLA  LSC
Sbjct: 61 FLDLGVVEEHKDKTYLATLLSC 82

[Close]

BLAST of MELO3C020727 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1   MDHFQIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNL 60
           MDH QI VSEWISF VTRSEVKY KPP RKPKKTSRPRSTHNP+G PI+RPDWS+ EL +
Sbjct: 234 MDHSQITVSEWISFWVTRSEVKYSKPPPRKPKKTSRPRSTHNPDGIPIRRPDWSKAELKV 293

Query: 61  FLDLGVAEEHKDKTYLAAFLSC 83
           FLDL V ++H+DKTYLAAFLSC
Sbjct: 294 FLDLSVTDDHRDKTYLAAFLSC 315

[Close]

BLAST of MELO3C020727 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S+  Y KP  RK KK SR +ST NPNG+ I+  +WS  E  LF +L
Sbjct: 214 QVTIGSWISFWYLGSK-SYDKPTTRKQKKASRSKSTQNPNGSKIQAREWSSRESMLFAEL 273

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 274 GIRDDLKDETYLAAFLSC 290

[Close]

BLAST of MELO3C020727 vs. NCBI nr
Match: KAA0043323.1 (hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S   Y KP  RK KKTSR +ST NP+G+ I+  +WS  E  LF +L
Sbjct: 209 QVTIGSWISFWYLGSR-SYDKPTTRKQKKTSRSKSTQNPDGSKIQAREWSSRESMLFAEL 268

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 269 GIKDDLKDETYLAAFLSC 285

[Close]

BLAST of MELO3C020727 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S+  Y KP  RK KK SR +ST NP+G+ I+  +WS  E  LF +L
Sbjct: 253 QVTIGSWISFWYLGSK-SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAEL 312

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 313 GIRDDLKDETYLAAFLSC 329

[Close]

BLAST of MELO3C020727 vs. ExPASy TrEMBL
Match: A0A5D3DAL3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00240 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 74/82 (90.24%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MDHFQIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNL 60
          MDHFQI VS+WISF VTRSEVKYPKPP RKPKKTSRPRSTHNPNGTPIKR DWSEVELNL
Sbjct: 1  MDHFQIPVSKWISFWVTRSEVKYPKPPVRKPKKTSRPRSTHNPNGTPIKRLDWSEVELNL 60

Query: 61 FLDLGVAEEHKDKTYLAAFLSC 83
          FLDLGV EEHKDKTYLA  LSC
Sbjct: 61 FLDLGVVEEHKDKTYLATLLSC 82

[Close]

BLAST of MELO3C020727 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.1e-12
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S+  Y KP  RK KK SR +ST NPNG+ I+  +WS  E  LF +L
Sbjct: 214 QVTIGSWISFWYLGSK-SYDKPTTRKQKKASRSKSTQNPNGSKIQAREWSSRESMLFAEL 273

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 274 GIRDDLKDETYLAAFLSC 290

[Close]

BLAST of MELO3C020727 vs. ExPASy TrEMBL
Match: A0A5A7TIV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002340 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S   Y KP  RK KKTSR +ST NP+G+ I+  +WS  E  LF +L
Sbjct: 209 QVTIGSWISFWYLGSR-SYDKPTTRKQKKTSRSKSTQNPDGSKIQAREWSSRESMLFAEL 268

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 269 GIKDDLKDETYLAAFLSC 285

[Close]

BLAST of MELO3C020727 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S+  Y KP  RK KK SR +ST NP+G+ I+  +WS  E  LF +L
Sbjct: 77  QVTIGSWISFWYLGSK-SYDKPKTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAEL 136

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 137 GIRDDLKDETYLAAFLSC 153

[Close]

BLAST of MELO3C020727 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 5   QIHVSEWISFLVTRSEVKYPKPPARKPKKTSRPRSTHNPNGTPIKRPDWSEVELNLFLDL 64
           Q+ +  WISF    S+  Y KP  RK KK SR +ST NP+G+ I+  +WS  E  LF +L
Sbjct: 253 QVTIGSWISFWYLGSK-SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAEL 312

Query: 65  GVAEEHKDKTYLAAFLSC 83
           G+ ++ KD+TYLAAFLSC
Sbjct: 313 GIRDDLKDETYLAAFLSC 329

The following BLAST results are available for this feature:

BLAST of MELO3C020727 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062705.1	3.1e-34	90.24	uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_031745312.1	1.0e-29	79.27	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
KAA0052363.1	1.7e-11	51.28	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
KAA0043323.1	2.2e-11	51.28	hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]	[more]
KAA0053466.1	6.3e-11	50.00	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C020727 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C020727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAL3	1.5e-34	90.24	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X8	8.1e-12	51.28	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TIV2	1.1e-11	51.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UVI5	3.1e-11	50.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UGW6	3.1e-11	50.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO3C020727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..51
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 7..82
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 7..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020727.1	MELO3C020727.1	mRNA