Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGGAACATAATTCATGATTATTGTCATTATCATTTGTTGGATTTAACATTGATATATATATTTCTTGAGTTTAATAACATTAGCTTTGTCGGGACCAAGTCTTGAATTATCCGAATCATTCTCCAATCACAATGCTTAAGCTCGAGGAAGAGCTCACCACTGACCAATTTTAAATGATCTCGTCCTTTGAGCAACCAAGACAGACTCGAATTTTAACGATGTCCCATGCATCAATCCGGTTGTGGTGGAAGGTAAGGGGTAATGCAATATCATTTTCTTATACGACAGAAATCATGAATTGGTACTTCGATGATTTCGCTTTTGTTACATTTTTGGGCACTCTTCTTTTTCTCTATCCATACTTTATTGGGCCAAATTCGAAAACCAATTGGAAATTTTTATGAAATTATCATTTTTTGAGGTCACATGATTCTTCTTTGATCGTTTAGTTTCAAGGTTTATATACCTTTGAGCTTCTCAAAGTATTCTCTTACAAAGTTATTTTCCCCAAAGCATTAATTCTGTTCTGCCCTTGCCTTTTTTAGAGTTATTGTCAGAAAACTTTTCAAGGTTATAATGGGCCAGTTTCAACTCTGTCCGATAAACTGTTAGGTGATGGTAGTGACAAAGTATTGGCCAGTGGAGGAGAAGATGGTCCTGTTCGCATTTGGTTTCTTAGTACCAGTGGCAAGCGAGGCAATAGTGCATATAATTACCATAAGAATATAGAATATTGAGGCCGATAGAATTCATAGTTGGAACTGTATCGCATATAATTACTTTGAAATTTAGACTATGTTATCCAAAACTAGAGTGATAGTATTTGGCTGTGGTGTCAGTGCTTTGTCGATTAACTGGGATTAGTTCCTCATCGTAAATTTGTGTGTGCATGTCGAATATCCCAGAACTTTGTAACATATGCCTCAATTCTTGTAGTATTATCTCTGTTATTACTCGGTGTTCTCTTCTTTGCACTGTAGAGAGAGTTATCATTATCTATTGACAGCAATTATACATATTAACTTTTTCTTCTCTTTGTCAATGCGTCCAGGCATAAGTCTTCCCTTTTGGTTAGCATTGCAAGAGATCCCAAGGCACTTTTACAAATTTTTAACGCTATGAAATTTAGCATTTTCTTGAGCAAGTTCAATATTAAGAGATGTGAGAGGTCAATTGTCTTGTCGTGTTCTTTCTTGTAAATAAGCTAAGCAACGGTGTTGTCATAATGTTTTGAAGTTTATCTTTGTTGACTGTTTATGGCAACACCATGACATAATTAAGGTGCTATGTTATACAGCGTTTCAGTTGTCTTATTTAATTTTTCTTGGTCCTTTAATCCTATTGAGTTTAGATTTACGGATGCTTGTCAGAAACAATGAAGCTGAAGTTTATAGAAACATCAATATAGGGTGTAGTGGATGTTCTTAATTAAGTTATGCTTTTATAGTTTTAGTTGGATTTGAACTAATTCCCTTCTTTCTTTTTGAAGGGATAAAAGTTTCGTGTCATGGATCGTAGATAGTATAATGGAATTTTCAATTATCGATAGAAGATTTTTTTTTCCTTACAGTAATTACTGGCCCAGGGTGATGTCTGAACAGAGGAAGAAGCCAATCTTTGAGGTCTTGGGGGAAGTCGAATGCCATTGGAAAGGAAGTCACTCAACATTTTTGTAA
mRNA sequence
ATTGGGAACATAATTCATGATTATTGTCATTATCATTTGTTGGATTTAACATTGATATATATATTTCTTGAGTTTAATAACATTAGCTTTGTCGGGACCAAGTCTTGAATTATCCGAATCATTCTCCAATCACAATGCTTAAGCTCGAGGAAGAGCTCACCACTGACCAATTTTAAATGATCTCGTCCTTTGAGCAACCAAGACAGACTCGAATTTTAACGATGTCCCATGCATCAATCCGGTTGTGGTGGAAGAAAACTTTTCAAGGTTATAATGGGCCAGTTTCAACTCTGTCCGATAAACTGTTAGGTGATGGTAGTGACAAAGTATTGGCCAGTGGAGGAGAAGATGGTCCTGTTCGCATTTGGTTTCTTAGTACCAGTGGCAAGCGAGGCAATAATTTACGGATGCTTGTCAGAAACAATGAAGCTGAAGTTTATAGAAACATCAATATAGGTAATTACTGGCCCAGGGTGATGTCTGAACAGAGGAAGAAGCCAATCTTTGAGGTCTTGGGGGAAGTCGAATGCCATTGGAAAGGAAGTCACTCAACATTTTTGTAA
Coding sequence (CDS)
ATGATCTCGTCCTTTGAGCAACCAAGACAGACTCGAATTTTAACGATGTCCCATGCATCAATCCGGTTGTGGTGGAAGAAAACTTTTCAAGGTTATAATGGGCCAGTTTCAACTCTGTCCGATAAACTGTTAGGTGATGGTAGTGACAAAGTATTGGCCAGTGGAGGAGAAGATGGTCCTGTTCGCATTTGGTTTCTTAGTACCAGTGGCAAGCGAGGCAATAATTTACGGATGCTTGTCAGAAACAATGAAGCTGAAGTTTATAGAAACATCAATATAGGTAATTACTGGCCCAGGGTGATGTCTGAACAGAGGAAGAAGCCAATCTTTGAGGTCTTGGGGGAAGTCGAATGCCATTGGAAAGGAAGTCACTCAACATTTTTGTAA
Protein sequence
MISSFEQPRQTRILTMSHASIRLWWKKTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLSTSGKRGNNLRMLVRNNEAEVYRNINIGNYWPRVMSEQRKKPIFEVLGEVECHWKGSHSTFL
Homology
BLAST of MELO3C030970 vs. NCBI nr
Match:
KAG7022229.1 (hypothetical protein SDJN02_15959 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 99.0 bits (245), Expect = 3.2e-17
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0
Query: 13 ILTMSHASIRLWWKKTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLSTSGKR 72
+ + S SIRLWWKK F+G++GPVSTLSDKLLGDGS KVLASGGEDG VR+W L +SGKR
Sbjct: 175 VTSSSDHSIRLWWKKCFRGHSGPVSTLSDKLLGDGSSKVLASGGEDGTVRLWSLGSSGKR 234
Query: 73 GNN 76
G +
Sbjct: 235 GKS 237
BLAST of MELO3C030970 vs. NCBI nr
Match:
XP_022152201.1 (F-box/WD repeat-containing protein sel-10-like [Momordica charantia])
HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0
Query: 13 ILTMSHASIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLST 72
+ + S SIR WWK + F+G+NGP+STLSDKLLGD S KVLASGGEDG VR+W LS+
Sbjct: 175 VTSSSDHSIRFWWKGSCQRCFRGHNGPISTLSDKLLGDDSSKVLASGGEDGTVRLWSLSS 234
Query: 73 SGKRGNNLRMLVRNNEAEVYRNINIGNY 97
SGKRG + M+ + ++I++ +
Sbjct: 235 SGKRGKSALMVTLHGHGRPIKSISVAGH 262
BLAST of MELO3C030970 vs. NCBI nr
Match:
XP_034706392.1 (receptor of activated protein C kinase 1-like [Vitis riparia])
HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0
Query: 6 EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
E R+ +L S SIRLWWK + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220
Query: 66 PVRIWFLSTSGKRG 74
VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234
BLAST of MELO3C030970 vs. NCBI nr
Match:
XP_010661027.1 (PREDICTED: receptor of activated protein C kinase 1 [Vitis vinifera] >CBI22162.3 unnamed protein product, partial [Vitis vinifera])
HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0
Query: 6 EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
E R+ +L S SIRLWWK + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220
Query: 66 PVRIWFLSTSGKRG 74
VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234
BLAST of MELO3C030970 vs. NCBI nr
Match:
CAN79923.1 (hypothetical protein VITISV_042443 [Vitis vinifera])
HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0
Query: 6 EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
E R+ +L S SIRLWWK + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220
Query: 66 PVRIWFLSTSGKRG 74
VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234
BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match:
A0A6J1DGX1 (F-box/WD repeat-containing protein sel-10-like OS=Momordica charantia OX=3673 GN=LOC111019976 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0
Query: 13 ILTMSHASIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLST 72
+ + S SIR WWK + F+G+NGP+STLSDKLLGD S KVLASGGEDG VR+W LS+
Sbjct: 175 VTSSSDHSIRFWWKGSCQRCFRGHNGPISTLSDKLLGDDSSKVLASGGEDGTVRLWSLSS 234
Query: 73 SGKRGNNLRMLVRNNEAEVYRNINIGNY 97
SGKRG + M+ + ++I++ +
Sbjct: 235 SGKRGKSALMVTLHGHGRPIKSISVAGH 262
BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match:
A0A438GHG4 (F-box/WD repeat-containing protein sel-10 OS=Vitis vinifera OX=29760 GN=sel-10 PE=4 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0
Query: 6 EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
E R+ +L S SIRLWWK + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 167 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 226
Query: 66 PVRIWFLSTSGKRG 74
VR+W LS+SGKRG
Sbjct: 227 TVRLWSLSSSGKRG 240
BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match:
D7SX65 (WD_REPEATS_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0108g00070 PE=4 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0
Query: 6 EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
E R+ +L S SIRLWWK + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220
Query: 66 PVRIWFLSTSGKRG 74
VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234
BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match:
A5ACR8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042443 PE=4 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0
Query: 6 EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
E R+ +L S SIRLWWK + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220
Query: 66 PVRIWFLSTSGKRG 74
VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234
BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match:
A0A6J1ES67 (transcription initiation factor TFIID subunit 5-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435472 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 8.4e-16
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 0
Query: 13 ILTMSHASIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLST 72
+ + S SIRLWWK K F+G++GPVSTLSDKLLGDGS KVLASGGEDG VR+W L +
Sbjct: 175 VTSSSDHSIRLWWKGSCQKCFRGHSGPVSTLSDKLLGDGSSKVLASGGEDGTVRLWSLGS 234
Query: 73 SGKRGNN 76
SGKRG +
Sbjct: 235 SGKRGKS 241
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7022229.1 | 3.2e-17 | 71.43 | hypothetical protein SDJN02_15959 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022152201.1 | 3.5e-16 | 51.14 | F-box/WD repeat-containing protein sel-10-like [Momordica charantia] | [more] |
XP_034706392.1 | 7.8e-16 | 64.86 | receptor of activated protein C kinase 1-like [Vitis riparia] | [more] |
XP_010661027.1 | 7.8e-16 | 64.86 | PREDICTED: receptor of activated protein C kinase 1 [Vitis vinifera] >CBI22162.3... | [more] |
CAN79923.1 | 7.8e-16 | 64.86 | hypothetical protein VITISV_042443 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DGX1 | 1.7e-16 | 51.14 | F-box/WD repeat-containing protein sel-10-like OS=Momordica charantia OX=3673 GN... | [more] |
A0A438GHG4 | 3.8e-16 | 64.86 | F-box/WD repeat-containing protein sel-10 OS=Vitis vinifera OX=29760 GN=sel-10 P... | [more] |
D7SX65 | 3.8e-16 | 64.86 | WD_REPEATS_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14... | [more] |
A5ACR8 | 3.8e-16 | 64.86 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042443 PE=4 SV=1 | [more] |
A0A6J1ES67 | 8.4e-16 | 67.16 | transcription initiation factor TFIID subunit 5-like isoform X3 OS=Cucurbita mos... | [more] |
Match Name | E-value | Identity | Description | |