MELO3C030970 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030970
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	WD_REPEATS_REGION domain-containing protein
Location	chr04: 27239523 .. 27241201 (-)
RNA-Seq Expression	MELO3C030970
Synteny	MELO3C030970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGAACATAATTCATGATTATTGTCATTATCATTTGTTGGATTTAACATTGATATATATATTTCTTGAGTTTAATAACATTAGCTTTGTCGGGACCAAGTCTTGAATTATCCGAATCATTCTCCAATCACAATGCTTAAGCTCGAGGAAGAGCTCACCACTGACCAATTTTAAATGATCTCGTCCTTTGAGCAACCAAGACAGACTCGAATTTTAACGATGTCCCATGCATCAATCCGGTTGTGGTGGAAGGTAAGGGGTAATGCAATATCATTTTCTTATACGACAGAAATCATGAATTGGTACTTCGATGATTTCGCTTTTGTTACATTTTTGGGCACTCTTCTTTTTCTCTATCCATACTTTATTGGGCCAAATTCGAAAACCAATTGGAAATTTTTATGAAATTATCATTTTTTGAGGTCACATGATTCTTCTTTGATCGTTTAGTTTCAAGGTTTATATACCTTTGAGCTTCTCAAAGTATTCTCTTACAAAGTTATTTTCCCCAAAGCATTAATTCTGTTCTGCCCTTGCCTTTTTTAGAGTTATTGTCAGAAAACTTTTCAAGGTTATAATGGGCCAGTTTCAACTCTGTCCGATAAACTGTTAGGTGATGGTAGTGACAAAGTATTGGCCAGTGGAGGAGAAGATGGTCCTGTTCGCATTTGGTTTCTTAGTACCAGTGGCAAGCGAGGCAATAGTGCATATAATTACCATAAGAATATAGAATATTGAGGCCGATAGAATTCATAGTTGGAACTGTATCGCATATAATTACTTTGAAATTTAGACTATGTTATCCAAAACTAGAGTGATAGTATTTGGCTGTGGTGTCAGTGCTTTGTCGATTAACTGGGATTAGTTCCTCATCGTAAATTTGTGTGTGCATGTCGAATATCCCAGAACTTTGTAACATATGCCTCAATTCTTGTAGTATTATCTCTGTTATTACTCGGTGTTCTCTTCTTTGCACTGTAGAGAGAGTTATCATTATCTATTGACAGCAATTATACATATTAACTTTTTCTTCTCTTTGTCAATGCGTCCAGGCATAAGTCTTCCCTTTTGGTTAGCATTGCAAGAGATCCCAAGGCACTTTTACAAATTTTTAACGCTATGAAATTTAGCATTTTCTTGAGCAAGTTCAATATTAAGAGATGTGAGAGGTCAATTGTCTTGTCGTGTTCTTTCTTGTAAATAAGCTAAGCAACGGTGTTGTCATAATGTTTTGAAGTTTATCTTTGTTGACTGTTTATGGCAACACCATGACATAATTAAGGTGCTATGTTATACAGCGTTTCAGTTGTCTTATTTAATTTTTCTTGGTCCTTTAATCCTATTGAGTTTAGATTTACGGATGCTTGTCAGAAACAATGAAGCTGAAGTTTATAGAAACATCAATATAGGGTGTAGTGGATGTTCTTAATTAAGTTATGCTTTTATAGTTTTAGTTGGATTTGAACTAATTCCCTTCTTTCTTTTTGAAGGGATAAAAGTTTCGTGTCATGGATCGTAGATAGTATAATGGAATTTTCAATTATCGATAGAAGATTTTTTTTTCCTTACAGTAATTACTGGCCCAGGGTGATGTCTGAACAGAGGAAGAAGCCAATCTTTGAGGTCTTGGGGGAAGTCGAATGCCATTGGAAAGGAAGTCACTCAACATTTTTGTAA

mRNA sequence

ATTGGGAACATAATTCATGATTATTGTCATTATCATTTGTTGGATTTAACATTGATATATATATTTCTTGAGTTTAATAACATTAGCTTTGTCGGGACCAAGTCTTGAATTATCCGAATCATTCTCCAATCACAATGCTTAAGCTCGAGGAAGAGCTCACCACTGACCAATTTTAAATGATCTCGTCCTTTGAGCAACCAAGACAGACTCGAATTTTAACGATGTCCCATGCATCAATCCGGTTGTGGTGGAAGAAAACTTTTCAAGGTTATAATGGGCCAGTTTCAACTCTGTCCGATAAACTGTTAGGTGATGGTAGTGACAAAGTATTGGCCAGTGGAGGAGAAGATGGTCCTGTTCGCATTTGGTTTCTTAGTACCAGTGGCAAGCGAGGCAATAATTTACGGATGCTTGTCAGAAACAATGAAGCTGAAGTTTATAGAAACATCAATATAGGTAATTACTGGCCCAGGGTGATGTCTGAACAGAGGAAGAAGCCAATCTTTGAGGTCTTGGGGGAAGTCGAATGCCATTGGAAAGGAAGTCACTCAACATTTTTGTAA

Coding sequence (CDS)

ATGATCTCGTCCTTTGAGCAACCAAGACAGACTCGAATTTTAACGATGTCCCATGCATCAATCCGGTTGTGGTGGAAGAAAACTTTTCAAGGTTATAATGGGCCAGTTTCAACTCTGTCCGATAAACTGTTAGGTGATGGTAGTGACAAAGTATTGGCCAGTGGAGGAGAAGATGGTCCTGTTCGCATTTGGTTTCTTAGTACCAGTGGCAAGCGAGGCAATAATTTACGGATGCTTGTCAGAAACAATGAAGCTGAAGTTTATAGAAACATCAATATAGGTAATTACTGGCCCAGGGTGATGTCTGAACAGAGGAAGAAGCCAATCTTTGAGGTCTTGGGGGAAGTCGAATGCCATTGGAAAGGAAGTCACTCAACATTTTTGTAA

Protein sequence

MISSFEQPRQTRILTMSHASIRLWWKKTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLSTSGKRGNNLRMLVRNNEAEVYRNINIGNYWPRVMSEQRKKPIFEVLGEVECHWKGSHSTFL

Homology

[Close]

BLAST of MELO3C030970 vs. NCBI nr
Match: KAG7022229.1 (hypothetical protein SDJN02_15959 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-17
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 13  ILTMSHASIRLWWKKTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLSTSGKR 72
           + + S  SIRLWWKK F+G++GPVSTLSDKLLGDGS KVLASGGEDG VR+W L +SGKR
Sbjct: 175 VTSSSDHSIRLWWKKCFRGHSGPVSTLSDKLLGDGSSKVLASGGEDGTVRLWSLGSSGKR 234

Query: 73  GNN 76
           G +
Sbjct: 235 GKS 237

[Close]

BLAST of MELO3C030970 vs. NCBI nr
Match: XP_022152201.1 (F-box/WD repeat-containing protein sel-10-like [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 13  ILTMSHASIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLST 72
           + + S  SIR WWK    + F+G+NGP+STLSDKLLGD S KVLASGGEDG VR+W LS+
Sbjct: 175 VTSSSDHSIRFWWKGSCQRCFRGHNGPISTLSDKLLGDDSSKVLASGGEDGTVRLWSLSS 234

Query: 73  SGKRGNNLRMLVRNNEAEVYRNINIGNY 97
           SGKRG +  M+  +      ++I++  +
Sbjct: 235 SGKRGKSALMVTLHGHGRPIKSISVAGH 262

[Close]

BLAST of MELO3C030970 vs. NCBI nr
Match: XP_034706392.1 (receptor of activated protein C kinase 1-like [Vitis riparia])

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 6   EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
           E  R+  +L  S    SIRLWWK    + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220

Query: 66  PVRIWFLSTSGKRG 74
            VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234

[Close]

BLAST of MELO3C030970 vs. NCBI nr
Match: XP_010661027.1 (PREDICTED: receptor of activated protein C kinase 1 [Vitis vinifera] >CBI22162.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 6   EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
           E  R+  +L  S    SIRLWWK    + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220

Query: 66  PVRIWFLSTSGKRG 74
            VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234

[Close]

BLAST of MELO3C030970 vs. NCBI nr
Match: CAN79923.1 (hypothetical protein VITISV_042443 [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 6   EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
           E  R+  +L  S    SIRLWWK    + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220

Query: 66  PVRIWFLSTSGKRG 74
            VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234

[Close]

BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match: A0A6J1DGX1 (F-box/WD repeat-containing protein sel-10-like OS=Momordica charantia OX=3673 GN=LOC111019976 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 13  ILTMSHASIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLST 72
           + + S  SIR WWK    + F+G+NGP+STLSDKLLGD S KVLASGGEDG VR+W LS+
Sbjct: 175 VTSSSDHSIRFWWKGSCQRCFRGHNGPISTLSDKLLGDDSSKVLASGGEDGTVRLWSLSS 234

Query: 73  SGKRGNNLRMLVRNNEAEVYRNINIGNY 97
           SGKRG +  M+  +      ++I++  +
Sbjct: 235 SGKRGKSALMVTLHGHGRPIKSISVAGH 262

[Close]

BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match: A0A438GHG4 (F-box/WD repeat-containing protein sel-10 OS=Vitis vinifera OX=29760 GN=sel-10 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 6   EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
           E  R+  +L  S    SIRLWWK    + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 167 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 226

Query: 66  PVRIWFLSTSGKRG 74
            VR+W LS+SGKRG
Sbjct: 227 TVRLWSLSSSGKRG 240

[Close]

BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match: D7SX65 (WD_REPEATS_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0108g00070 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 6   EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
           E  R+  +L  S    SIRLWWK    + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220

Query: 66  PVRIWFLSTSGKRG 74
            VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234

[Close]

BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match: A5ACR8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042443 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 6   EQPRQTRILTMSHA--SIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDG 65
           E  R+  +L  S    SIRLWWK    + F+G+NGPVSTLSDKLLGDGS KV ASGGEDG
Sbjct: 161 ETQREENVLVTSSCDHSIRLWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDG 220

Query: 66  PVRIWFLSTSGKRG 74
            VR+W LS+SGKRG
Sbjct: 221 TVRLWSLSSSGKRG 234

[Close]

BLAST of MELO3C030970 vs. ExPASy TrEMBL
Match: A0A6J1ES67 (transcription initiation factor TFIID subunit 5-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435472 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.4e-16
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 13  ILTMSHASIRLWWK----KTFQGYNGPVSTLSDKLLGDGSDKVLASGGEDGPVRIWFLST 72
           + + S  SIRLWWK    K F+G++GPVSTLSDKLLGDGS KVLASGGEDG VR+W L +
Sbjct: 175 VTSSSDHSIRLWWKGSCQKCFRGHSGPVSTLSDKLLGDGSSKVLASGGEDGTVRLWSLGS 234

Query: 73  SGKRGNN 76
           SGKRG +
Sbjct: 235 SGKRGKS 241

The following BLAST results are available for this feature:

BLAST of MELO3C030970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022229.1	3.2e-17	71.43	hypothetical protein SDJN02_15959 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022152201.1	3.5e-16	51.14	F-box/WD repeat-containing protein sel-10-like [Momordica charantia]	[more]
XP_034706392.1	7.8e-16	64.86	receptor of activated protein C kinase 1-like [Vitis riparia]	[more]
XP_010661027.1	7.8e-16	64.86	PREDICTED: receptor of activated protein C kinase 1 [Vitis vinifera] >CBI22162.3...	[more]
CAN79923.1	7.8e-16	64.86	hypothetical protein VITISV_042443 [Vitis vinifera]	[more]

BLAST of MELO3C030970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGX1	1.7e-16	51.14	F-box/WD repeat-containing protein sel-10-like OS=Momordica charantia OX=3673 GN...	[more]
A0A438GHG4	3.8e-16	64.86	F-box/WD repeat-containing protein sel-10 OS=Vitis vinifera OX=29760 GN=sel-10 P...	[more]
D7SX65	3.8e-16	64.86	WD_REPEATS_REGION domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14...	[more]
A5ACR8	3.8e-16	64.86	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042443 PE=4 SV=1	[more]
A0A6J1ES67	8.4e-16	67.16	transcription initiation factor TFIID subunit 5-like isoform X3 OS=Cucurbita mos...	[more]

BLAST of MELO3C030970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..100 e-value: 1.7E-5 score: 25.6
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 21..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030970.1	MELO3C030970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding