MELO3C028990 (gene) Melon (DHL92) v4

Overview
NameMELO3C028990
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein GrpE-like
Locationchr01: 11986705 .. 11988764 (-)
RNA-Seq ExpressionMELO3C028990
SyntenyMELO3C028990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGATGTAGTAGGCTCTTATGCAGAAATGGAGAATGTTATTGACAGAACAAGACGTGAAGCAGAGAATTCAAAGAAGTTTGCCATTCAGGATTTTTGATTGTTGTTTTCCTAGTGCTTCAAATTTTATCTTGGGTTTCCTCCCGTTACTCCTTCGATTAAACACAAGCTTATGTGTGGTAACATATGCTTGACAGAATTTTGCAAAGAGATTGCTTGATGTTGTGGATAACTTGGGAAGAGCTTCTTCTGTTGTTAAAGGTAGAAAGGATTCAAGTGGAGCCATACCTTTTCTAAAAACCCTTCCAGAAGTGGCCGGTATGACCGAGAAACAGCTTATGGAGGTAAAGCTTTCCATTTTGCATCGACGTTGTGTAATTGGCATGAGCTATTCAACCTTTCATGAAGAAAACCACAATTTTAGTTTGTTCTGATGCTTCAAACACTTTTTCAGGTATTTAAGTAAGTCCAGGGTCGAGAAATTTGAGCCTACCAAATGAACCATTTGATCCGCATAAGCATTATGCTGTATTTTAGACACTGGATGGTCTAAACCAGAAAGCACTGTGGCTAGTTTCCTCAAGGTATTAGTTCAATTTGTGATCCTATAAATACCTCTGGCATTTGTGTACTTCAAAAAATGGGTAGTTTGAAGATATTTAGTTCATAATCATATGCTAAGGAAAATTCATTGATCAAACTGGAAGGGGGAACTGTCTTTTTAGTCTATGTTTGCTTTCAGTAATGTGAAGTTTGGTCGTTAGTCCTCGGGGTTCATGCTTAGATGGAAATTCTTTGTTCTAATGGTGTCTTTGCTCTTCTTTGGAGGCTTTTATTCGAAAGAAACTCAGGATTTTTCATGTCGATAATCCAAGTAGGGATTTTTTCGGGATCTAGTTTTTCGTTTTGCTTCTACTTGGTCTTCCACCTCTAAATTCTTTTGTGTTTATAGCCTAACTTGTCTTTACACCAGTTTTACTTCCTTTCTGTAACTTGATGCGTTTGGATGTCTCATCTTCCCCACTTTTGTATTTCCTTTTGTAGATGAAAGTTAAGTTTCTAATAAAGAATCGGTTGATAGTAGGAGCAGTCATGTCAATATGTTATAACAGTTTTATTTGCTTCCAAATTTTTTAAGAACTCAAGACAGTTGCTGTTTAGTTCAGGAGCTTGGTTTGATAGACATTGCATTGATTTTCTCATGTTTTGTACAACAGTCTGGATATACGCTACATGATCAAGTTCTATGACCAGCCAAGGTTGGTATGACTCAAAATATGGAAGATATTTCAACCAATTAATGTCTAAAAAGATGGAGGCTGCTATGGAATAATCCCAAGAATATGGTTGTTGTGGCTGTCATTGGTCTGTTCAAGTTCTTCCAATTCAATCAGGTAGCATGAGGTGCTAAGCTAAGTAATGATTCTATCTTTCCTATTGAATTAGAACTTGCTTTCCTTTTGTATACCTAACCATTAAACAAAGCTTGATGGTTGGAAGGAAGATATTACCAGTTTCCATGAGGTTATGATGATTTGTTGCTTAAGCTGTTATCAATTTTTATACTTCAGGTTTTGGAGTTGGGGACGTCAAGAAAAGGATATTTGCCAAAGGTGTGAGGGTAGGGACTTCGCTAACTACATCCACAGGAATAAAATGGAAGTCCAAGACTACTGCACAAAAGTTCATTTTGATGTTATTTTGAGTTACAAATTAAGTTTATGAGAAAGTGATCATTTGCAGTTTTACTTTTTAAAAATTCAACATTTTCGATGGCAAATCTTCCTTCCACCTCTCGTAAATTCTTTGACTTTGAGTGGATAGGTAATAAGACACTAATTACCATTTCAAAAGCTATGATTTGCAATCCAATTCTCGTAAAAACAAAATCTAAAAAGAAAAAAAATAGAAAAAGGACATAGTCTGTCTTATTTTGTTTGTTTGCTAACATGAACTTGAGTAGGTTAAAATAAACGATATTATGTAATGAATGTTGTGATCTTAATTTTATATTAATGTTGATGAAAGCATCTGCAGAACGTTGACGTTGATAGATAA

mRNA sequence

ATGCAAGATGTAGTAGGCTCTTATGCAGAAATGGAGAATAATTTTGCAAAGAGATTGCTTGATGTTGTGGATAACTTGGGAAGAGCTTCTTCTGTTGTTAAAGGTAGAAAGGATTCAAGTGGAGCCATACCTTTTCTAAAAACCCTTCCAGAAGTGGCCGGTATGACCGAGAAACAGCTTATGGAGACACTGGATGGTCTAAACCAGAAAGCACTGTGGCTAGTTTCCTCAAGTCTGGATATACGCTACATGATCAAGTTCTATGACCAGCCAAGATGGAGGCTGCTATGGAATAATCCCAAGAATATGGTTGTTGTGGCTGTCATTGGTCTGTTCAAGTTCTTCCAATTCAATCAGGTTTTGGAGTTGGGGACGTCAAGAAAAGGATATTTGCCAAAGCATCTGCAGAACGTTGACGTTGATAGATAA

Coding sequence (CDS)

ATGCAAGATGTAGTAGGCTCTTATGCAGAAATGGAGAATAATTTTGCAAAGAGATTGCTTGATGTTGTGGATAACTTGGGAAGAGCTTCTTCTGTTGTTAAAGGTAGAAAGGATTCAAGTGGAGCCATACCTTTTCTAAAAACCCTTCCAGAAGTGGCCGGTATGACCGAGAAACAGCTTATGGAGACACTGGATGGTCTAAACCAGAAAGCACTGTGGCTAGTTTCCTCAAGTCTGGATATACGCTACATGATCAAGTTCTATGACCAGCCAAGATGGAGGCTGCTATGGAATAATCCCAAGAATATGGTTGTTGTGGCTGTCATTGGTCTGTTCAAGTTCTTCCAATTCAATCAGGTTTTGGAGTTGGGGACGTCAAGAAAAGGATATTTGCCAAAGCATCTGCAGAACGTTGACGTTGATAGATAA

Protein sequence

MQDVVGSYAEMENNFAKRLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMETLDGLNQKALWLVSSSLDIRYMIKFYDQPRWRLLWNNPKNMVVVAVIGLFKFFQFNQVLELGTSRKGYLPKHLQNVDVDR
Homology
BLAST of MELO3C028990 vs. NCBI nr
Match: KAA0049810.1 (protein GrpE-like [Cucumis melo var. makuwa] >TYK23054.1 protein GrpE-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 4.8e-22
Identity = 61/83 (73.49%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 11  MENNFAKRLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMETLDGLNQK 70
           +  NFAK LLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLME        
Sbjct: 32  LSKNFAKSLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF------ 91

Query: 71  ALWLVSSSLDIRYMIKFYDQPRW 94
                  +LDIRYMI+FYDQPR+
Sbjct: 92  -------NLDIRYMIEFYDQPRF 101

BLAST of MELO3C028990 vs. NCBI nr
Match: KAF3783621.1 (grpE protein [Nymphaea thermarum])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 48/102 (47.06%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 4   VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVKG-------RKD 63
           V+ SYAEMEN                  NFAK LLDV DNLGRASSVVK         KD
Sbjct: 183 VLRSYAEMENVIDRTKREAENSKKFAIQNFAKSLLDVADNLGRASSVVKDGFQKIDPTKD 242

Query: 64  SSGAIPFLKTLPEVAGMTEKQLMETLDGLNQKALWLVSSSLD 81
           SSGA+P LKTL E   MT+KQL+E L     +    +  S D
Sbjct: 243 SSGAVPLLKTLLEGVEMTDKQLIEVLRKFGVEKFEAIDESFD 284

BLAST of MELO3C028990 vs. NCBI nr
Match: XP_038903423.1 (grpE protein homolog 2, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 49/90 (54.44%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 1   MQD-VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVK------- 60
           MQD VV +YAEMEN                  NFAK LLDV DNLGRASSVVK       
Sbjct: 138 MQDKVVRTYAEMENVMARTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKID 197

Query: 61  GRKDSSGAIPFLKTLPEVAGMTEKQLMETL 65
             KDS+GA+P LKTL E   MTEKQL E L
Sbjct: 198 STKDSAGAVPLLKTLLEGVEMTEKQLSEVL 227

BLAST of MELO3C028990 vs. NCBI nr
Match: XP_004149344.1 (grpE protein homolog 2, mitochondrial [Cucumis sativus] >KGN56097.1 hypothetical protein Csa_010236 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 48/90 (53.33%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 1   MQD-VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVKG------ 60
           MQD V+ +YAEMEN                  NFAK LLDV DNLGRASSVVKG      
Sbjct: 138 MQDKVIRTYAEMENVMARTKREAENSKKFAIQNFAKSLLDVADNLGRASSVVKGSFSKID 197

Query: 61  -RKDSSGAIPFLKTLPEVAGMTEKQLMETL 65
              DSSGA+P LKTL +   MTEKQL E L
Sbjct: 198 STNDSSGAVPLLKTLIDGVEMTEKQLSEVL 227

BLAST of MELO3C028990 vs. NCBI nr
Match: XP_031489398.1 (grpE protein homolog 2, mitochondrial-like isoform X2 [Nymphaea colorata])

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-09
Identity = 48/102 (47.06%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 4   VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVKG-------RKD 63
           V+ SYAEMEN                  NFAK LLDV DNLGRASSVVK         KD
Sbjct: 157 VLRSYAEMENVIDRTKREAENSKKFAIQNFAKSLLDVADNLGRASSVVKDSFQKIDPTKD 216

Query: 64  SSGAIPFLKTLPEVAGMTEKQLMETLDGLNQKALWLVSSSLD 81
           SSGA+P LKTL E   MT+KQL+E L     +    +  S D
Sbjct: 217 SSGAVPLLKTLLEGVEMTDKQLIEVLRKFGVEKFEPIDESFD 258

BLAST of MELO3C028990 vs. ExPASy Swiss-Prot
Match: Q8LB47 (GrpE protein homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge2 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 43/84 (51.19%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 4   VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVK-------GRKD 63
           V+ +YAEMEN                  NFAK LLDV DNLGRASSVVK         +D
Sbjct: 169 VLRTYAEMENVMDRTRRDAENTKKYAVQNFAKSLLDVADNLGRASSVVKESFSKLDTSED 228

BLAST of MELO3C028990 vs. ExPASy Swiss-Prot
Match: Q9FLP3 (GrpE protein homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 33/56 (58.93%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 14  NFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLME 63
           NFA  LLDV DNL RASSVVK         KD +GA P LK L E   MTEKQL E
Sbjct: 172 NFATSLLDVADNLERASSVVKESFSKIDTSKDLAGATPLLKNLLEGVEMTEKQLAE 227

BLAST of MELO3C028990 vs. ExPASy TrEMBL
Match: A0A5D3DHG0 (Protein GrpE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00200 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-22
Identity = 61/83 (73.49%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 11  MENNFAKRLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMETLDGLNQK 70
           +  NFAK LLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLME        
Sbjct: 32  LSKNFAKSLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF------ 91

Query: 71  ALWLVSSSLDIRYMIKFYDQPRW 94
                  +LDIRYMI+FYDQPR+
Sbjct: 92  -------NLDIRYMIEFYDQPRF 101

BLAST of MELO3C028990 vs. ExPASy TrEMBL
Match: A0A0A0L683 (GrpE protein homolog OS=Cucumis sativus OX=3659 GN=Csa_3G073880 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 48/90 (53.33%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 1   MQD-VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVKG------ 60
           MQD V+ +YAEMEN                  NFAK LLDV DNLGRASSVVKG      
Sbjct: 138 MQDKVIRTYAEMENVMARTKREAENSKKFAIQNFAKSLLDVADNLGRASSVVKGSFSKID 197

Query: 61  -RKDSSGAIPFLKTLPEVAGMTEKQLMETL 65
              DSSGA+P LKTL +   MTEKQL E L
Sbjct: 198 STNDSSGAVPLLKTLIDGVEMTEKQLSEVL 227

BLAST of MELO3C028990 vs. ExPASy TrEMBL
Match: A0A2P5AS62 (GrpE protein homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_305620 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 48/88 (54.55%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 1   MQD-VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVK------- 60
           MQD V+ SYAEMEN                  NFAK LLDV DNLGRASSVVK       
Sbjct: 178 MQDKVLRSYAEMENVMERTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKID 237

Query: 61  GRKDSSGAIPFLKTLPEVAGMTEKQLME 63
             KDS+GA+P LKTL E   MTEKQL+E
Sbjct: 238 ASKDSAGAVPLLKTLLEGVEMTEKQLIE 265

BLAST of MELO3C028990 vs. ExPASy TrEMBL
Match: A0A444DY44 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00033804 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 55/140 (39.29%), Postives = 70/140 (50.00%), Query Frame = 0

Query: 1   MQD-VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVKGR----- 60
           MQD V+ SYAE+EN                  +FAK LLDV DNLGRASSVVK R     
Sbjct: 139 MQDKVIRSYAEVENVIDRTKREAENSKKFAIQSFAKSLLDVADNLGRASSVVKERFSKID 198

Query: 61  --KDSSGAIPFLKTLPEVAGMTEKQLMETLDGLNQKALWLVSSSLDIRYMIKFYDQPRWR 115
             KDS GA+P +KTL E   MT+KQL+E            V+   D+  + KF+D+    
Sbjct: 199 ESKDSVGAVPLIKTLLEGVEMTDKQLVE------------VNGMTDLSKLEKFWDKTS-- 258

BLAST of MELO3C028990 vs. ExPASy TrEMBL
Match: A0A6P3YV01 (grpE protein homolog 2, mitochondrial-like isoform X3 OS=Ziziphus jujuba OX=326968 GN=LOC107403622 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.5e-09
Identity = 48/88 (54.55%), Postives = 51/88 (57.95%), Query Frame = 0

Query: 1   MQD-VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVK------- 60
           MQD V+ SYAEMEN                  NFAK LLDV DNLGRASSVVK       
Sbjct: 161 MQDKVLRSYAEMENVMDRTRREAESTKKFAIQNFAKNLLDVADNLGRASSVVKESFLKID 220

Query: 61  GRKDSSGAIPFLKTLPEVAGMTEKQLME 63
             KDS+GA+P LKTL E   MTEKQL E
Sbjct: 221 ASKDSTGAVPLLKTLLEGVEMTEKQLAE 248

BLAST of MELO3C028990 vs. TAIR 10
Match: AT4G26780.1 (Co-chaperone GrpE family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 43/84 (51.19%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 4   VVGSYAEMEN------------------NFAKRLLDVVDNLGRASSVVK-------GRKD 63
           V+ +YAEMEN                  NFAK LLDV DNLGRASSVVK         +D
Sbjct: 169 VLRTYAEMENVMDRTRRDAENTKKYAVQNFAKSLLDVADNLGRASSVVKESFSKLDTSED 228

BLAST of MELO3C028990 vs. TAIR 10
Match: AT5G55200.1 (Co-chaperone GrpE family protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.5e-07
Identity = 33/56 (58.93%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 14  NFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLME 63
           NFA  LLDV DNL RASSVVK         KD +GA P LK L E   MTEKQL E
Sbjct: 172 NFATSLLDVADNLERASSVVKESFSKIDTSKDLAGATPLLKNLLEGVEMTEKQLAE 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0049810.14.8e-2273.49protein GrpE-like [Cucumis melo var. makuwa] >TYK23054.1 protein GrpE-like [Cucu... [more]
KAF3783621.13.5e-0947.06grpE protein [Nymphaea thermarum][more]
XP_038903423.16.0e-0954.44grpE protein homolog 2, mitochondrial-like [Benincasa hispida][more]
XP_004149344.16.0e-0953.33grpE protein homolog 2, mitochondrial [Cucumis sativus] >KGN56097.1 hypothetical... [more]
XP_031489398.16.0e-0947.06grpE protein homolog 2, mitochondrial-like isoform X2 [Nymphaea colorata][more]
Match NameE-valueIdentityDescription
Q8LB472.2e-0951.19GrpE protein homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge2 PE... [more]
Q9FLP35.0e-0658.93GrpE protein homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge1 PE... [more]
Match NameE-valueIdentityDescription
A0A5D3DHG02.3e-2273.49Protein GrpE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00... [more]
A0A0A0L6832.9e-0953.33GrpE protein homolog OS=Cucumis sativus OX=3659 GN=Csa_3G073880 PE=3 SV=1[more]
A0A2P5AS625.0e-0954.55GrpE protein homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_305620 PE=3 ... [more]
A0A444DY445.0e-0939.29Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00033804 PE=3 SV=1[more]
A0A6P3YV016.5e-0954.55grpE protein homolog 2, mitochondrial-like isoform X3 OS=Ziziphus jujuba OX=3269... [more]
Match NameE-valueIdentityDescription
AT4G26780.11.5e-1051.19Co-chaperone GrpE family protein [more]
AT5G55200.13.5e-0758.93Co-chaperone GrpE family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 3..65
e-value: 4.7E-7
score: 31.7
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 8..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028990.1MELO3C028990.1mRNA