Spg034683 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034683
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DUF4283 domain-containing protein
Location	scaffold7: 45162827 .. 45163625 (-)
RNA-Seq Expression	Spg034683
Synteny	Spg034683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATAAGGCCTTGATCCAGGTAGCTGATGGTATCTTGGGTCTTTCTTTGGATGGTAAGTGGAACACTTATGGGGATCTTCATTTGAAACTGGAATTTTGGTCTTCTGAGAAACATTCCCAGCCGAAATTTATAGAAAGTTATGGTGGATGGATTGCAATTAGAAATTTACCTTTAAACTTGTGGAATCGTGCTTCTTTTGAAGCTATAGGAAAGAATCTTGGTGGGTTGGTTAGTATTTCATCCAAAACGCTTAATTTATTAGATTGTTCGGAAGCTGTCATTGAAGTAGAAAAAATTCCTGTGGTTTTCTTCCTGTTGATATTAACGTAAAGATTGGAAATAAGTTTGAATTTTCTTTACGGTATGGTGATATTAATCCATTAGAGCCCACAAATTTGAAGTTTGTTTCAAGAAAACAATTATCAGTCAATGACTTTTCAAATTCCCTGGATTTAATAAGGATTAATCAAGTATTGTTGGATGAAGAATTTGCCCTTATTAATGAAGGGGTTAGGGGGGTTGATGTGCCATTAATTTCTCGTTATCAGAAGGTTCATAATGAGGTATTGGGTTCTCCAAAAGTTGCTTTGCTGCATGAAGAGATCATTAATAATGATGTTTCCAAGGAGTTTAATGCAAGTATTCAAAGTCAAATTCTATTCTCTCTCCTTCTAAAGTTATTAAGTCCCCATCTCATTATTCAATGATTAATTGCTCCAGCCCAAAAGAAGTCCAGAAGTCTCCTTCTATTGATCCTGATGCACTCAAGTTTCAAAACAATACCTCAAAATGA

mRNA sequence

ATGGATGATAAGGCCTTGATCCAGGTAGCTGATGGTATCTTGGGTCTTTCTTTGGATGGTAAGTGGAACACTTATGGGGATCTTCATTTGAAACTGGAATTTTGGTCTTCTGAGAAACATTCCCAGCCGAAATTTATAGAAAGTTATGGTGGATGGATTGCAATTAGAAATTTACCTTTAAACTTGTGGAATCGTGCTTCTTTTGAAGCTATAGGAAAGAATCTTGGTGGGTTGATTGGAAATAAGTTTGAATTTTCTTTACGGTATGGTGATATTAATCCATTAGAGCCCACAAATTTGAAGTTTGTTTCAAGAAAACAATTATCAGTCAATGACTTTTCAAATTCCCTGGATTTAATAAGGATTAATCAAGTATTGTTGGATGAAGAATTTGCCCTTATTAATGAAGGGGTTAGGGGGGTTGATGTGCCATTAATTTCTCGTTATCAGAAGGTTCATAATGAGGTATTGGGTTCTCCAAAAGTTGCTTTGCTGCATGAAGAGATCATTAATAATGATGTTTCCAAGGACCCAAAAGAAGTCCAGAAGTCTCCTTCTATTGATCCTGATGCACTCAAGTTTCAAAACAATACCTCAAAATGA

Coding sequence (CDS)

ATGGATGATAAGGCCTTGATCCAGGTAGCTGATGGTATCTTGGGTCTTTCTTTGGATGGTAAGTGGAACACTTATGGGGATCTTCATTTGAAACTGGAATTTTGGTCTTCTGAGAAACATTCCCAGCCGAAATTTATAGAAAGTTATGGTGGATGGATTGCAATTAGAAATTTACCTTTAAACTTGTGGAATCGTGCTTCTTTTGAAGCTATAGGAAAGAATCTTGGTGGGTTGATTGGAAATAAGTTTGAATTTTCTTTACGGTATGGTGATATTAATCCATTAGAGCCCACAAATTTGAAGTTTGTTTCAAGAAAACAATTATCAGTCAATGACTTTTCAAATTCCCTGGATTTAATAAGGATTAATCAAGTATTGTTGGATGAAGAATTTGCCCTTATTAATGAAGGGGTTAGGGGGGTTGATGTGCCATTAATTTCTCGTTATCAGAAGGTTCATAATGAGGTATTGGGTTCTCCAAAAGTTGCTTTGCTGCATGAAGAGATCATTAATAATGATGTTTCCAAGGACCCAAAAGAAGTCCAGAAGTCTCCTTCTATTGATCCTGATGCACTCAAGTTTCAAAACAATACCTCAAAATGA

Protein sequence

MDDKALIQVADGILGLSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPLNLWNRASFEAIGKNLGGLIGNKFEFSLRYGDINPLEPTNLKFVSRKQLSVNDFSNSLDLIRINQVLLDEEFALINEGVRGVDVPLISRYQKVHNEVLGSPKVALLHEEIINNDVSKDPKEVQKSPSIDPDALKFQNNTSK

Homology

[Close]

BLAST of Spg034683 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-14
Identity = 48/145 (33.10%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 16  LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPLNLWNRASFEAIGKNL 75
           +++ GKW  +G  HLK E W++  H +P ++  YGGWI+I+NLPL+ W + +FEAIGK  
Sbjct: 218 VNISGKWQKFGSFHLKFERWNNSIHGRPAYVRGYGGWISIKNLPLDYWCKQTFEAIGKYF 277

Query: 76  GGL---------------------------------IGNKFEFS--LRYGDINPLEPTNL 126
           GGL                                 + N+   S  L +GDI+   P + 
Sbjct: 278 GGLESIAMEILNLIKVLDAIIKVKENLCGFVPATIEVSNEKRGSIYLNFGDISTSNPPS- 337

[Close]

BLAST of Spg034683 vs. NCBI nr
Match: TYJ98837.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 14  LGLSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPLNLWNRASFEAIGK 73
           LG    GKW T+G+ HLK+E W + KHS P   + YGGW+ I+NLPL+ W R++ E IG 
Sbjct: 181 LGKDQQGKWQTWGNFHLKIERWDNLKHSWPLVQKGYGGWLKIKNLPLDYWCRSTLEVIGD 240

Query: 74  NLGGLIGNKFE 85
           +  GL    FE
Sbjct: 241 HFRGLTDIAFE 251

[Close]

BLAST of Spg034683 vs. NCBI nr
Match: TYJ98681.1 (protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           + ALI+++ GIL       GKW  +G+ HLK E W+  KH+ P  +  Y GWI++RNLPL
Sbjct: 164 ENALIRLSYGILEELTERPGKWQAFGNFHLKFEKWNKMKHNHPNVVCGYWGWISMRNLPL 223

Query: 63  NLWNRASFEAIGKNLGGL 79
           + W R  FEA G   GGL
Sbjct: 224 DYWCRKIFEATGAYFGGL 241

[Close]

BLAST of Spg034683 vs. NCBI nr
Match: KAA0056565.1 (hypothetical protein E6C27_scaffold288G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           +KAL+  +  I    L  +  W T G   +K E WSS  H+ PK I SYGGW   R +PL
Sbjct: 238 EKALVHFSSNIPANLLCQNKGWTTVGKYSVKFEKWSSAYHATPKLIPSYGGWTTFRGIPL 297

Query: 63  NLWNRASFEAIGKNLGGLI 80
           +LWN  +F+ +GK  GGLI
Sbjct: 298 HLWNMTTFQQLGKACGGLI 316

[Close]

BLAST of Spg034683 vs. NCBI nr
Match: TYK24247.1 (hypothetical protein E5676_scaffold205G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           +KAL+  +  I    L  +  W T G   +K E WSS  H+ PK I SYGGW   R +PL
Sbjct: 238 EKALVHFSSNIPANLLCQNKGWTTVGKYSVKFEKWSSAYHATPKLIPSYGGWTTFRGIPL 297

Query: 63  NLWNRASFEAIGKNLGGLI 80
           +LWN  +F+ +GK  GGLI
Sbjct: 298 HLWNMTTFQQLGKACGGLI 316

[Close]

BLAST of Spg034683 vs. ExPASy TrEMBL
Match: A0A5D3BI91 (Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00280 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 14  LGLSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPLNLWNRASFEAIGK 73
           LG    GKW T+G+ HLK+E W + KHS P   + YGGW+ I+NLPL+ W R++ E IG 
Sbjct: 181 LGKDQQGKWQTWGNFHLKIERWDNLKHSWPLVQKGYGGWLKIKNLPLDYWCRSTLEVIGD 240

Query: 74  NLGGLIGNKFE 85
           +  GL    FE
Sbjct: 241 HFRGLTDIAFE 251

[Close]

BLAST of Spg034683 vs. ExPASy TrEMBL
Match: A0A5D3BJ01 (Protein CHROMATIN REMODELING 20 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00090 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           + ALI+++ GIL       GKW  +G+ HLK E W+  KH+ P  +  Y GWI++RNLPL
Sbjct: 164 ENALIRLSYGILEELTERPGKWQAFGNFHLKFEKWNKMKHNHPNVVCGYWGWISMRNLPL 223

Query: 63  NLWNRASFEAIGKNLGGL 79
           + W R  FEA G   GGL
Sbjct: 224 DYWCRKIFEATGAYFGGL 241

[Close]

BLAST of Spg034683 vs. ExPASy TrEMBL
Match: A0A5D3DKV0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00050 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.8e-11
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           +KAL+  +  I    L  +  W T G   +K E WSS  H+ PK I SYGGW   R +PL
Sbjct: 238 EKALVHFSSNIPANLLCQNKGWTTVGKYSVKFEKWSSAYHATPKLIPSYGGWTTFRGIPL 297

Query: 63  NLWNRASFEAIGKNLGGLI 80
           +LWN  +F+ +GK  GGLI
Sbjct: 298 HLWNMTTFQQLGKACGGLI 316

[Close]

BLAST of Spg034683 vs. ExPASy TrEMBL
Match: A0A5A7UST0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.8e-11
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           +KAL+  +  I    L  +  W T G   +K E WSS  H+ PK I SYGGW   R +PL
Sbjct: 238 EKALVHFSSNIPANLLCQNKGWTTVGKYSVKFEKWSSAYHATPKLIPSYGGWTTFRGIPL 297

Query: 63  NLWNRASFEAIGKNLGGLI 80
           +LWN  +F+ +GK  GGLI
Sbjct: 298 HLWNMTTFQQLGKACGGLI 316

[Close]

BLAST of Spg034683 vs. ExPASy TrEMBL
Match: A0A5D3BSE0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00040 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 3   DKALIQVADGILG--LSLDGKWNTYGDLHLKLEFWSSEKHSQPKFIESYGGWIAIRNLPL 62
           +KAL+  +  I    L  +  W T G   ++ E WSS  H+ PK I SYGGW   R +PL
Sbjct: 240 EKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSYGGWTTFRGIPL 299

Query: 63  NLWNRASFEAIGKNLGGLI 80
           +LWN  +F+ IGK  GGLI
Sbjct: 300 HLWNMTTFQQIGKACGGLI 318

The following BLAST results are available for this feature:

BLAST of Spg034683 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904899.1	2.3e-14	33.10	uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]	[more]
TYJ98837.1	2.4e-11	47.89	putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa]	[more]
TYJ98681.1	4.1e-11	46.15	protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo var. makuwa]	[more]
KAA0056565.1	2.0e-10	44.30	hypothetical protein E6C27_scaffold288G00700 [Cucumis melo var. makuwa]	[more]
TYK24247.1	2.0e-10	44.30	hypothetical protein E5676_scaffold205G00050 [Cucumis melo var. makuwa]	[more]

BLAST of Spg034683 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI91	1.2e-11	47.89	Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BJ01	2.0e-11	46.15	Protein CHROMATIN REMODELING 20 isoform X4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3DKV0	9.8e-11	44.30	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UST0	9.8e-11	44.30	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BSE0	1.3e-10	44.30	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg034683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 23..81 e-value: 1.4E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034683.1	Spg034683.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity