Spg034347 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034347
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 21205822 .. 21211833 (-)
RNA-Seq ExpressionSpg034347
SyntenySpg034347
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGATCCGCCTAGGGTAAGGTTCGAGCTTGATCCAGAAATTGAGAGGACATTCAGGAGAAGAAAAAGAGAGCAGCGTAGAAATCAAAATCCAATGCATAACGTGCCGCGTCTCACACAAGTTCCAGAAGATCCACTTGATCCCCAGAATCGTGTGCTGCAGCCAAATCCACTACTGGAGCAAAATGGACAGCAAAATAATCAGGCTGAGTTGAATCCAGGAATTGCACGTCCTCAAATTAAGGCAGCAAATTTTGAAATGAAACCGGTAATGTTTCAGATGTTGCAAACCATGGGTCAGTTCCATGGTTTGTCATCTGAAGACCCTCATTTACATCTTAAGTCTTTTCTAGGAGTTAGTGATTCATTTGTGATTCAAGGAGTGTCTAGAGATGCCCTTAGATTAACTTTGTTCCCGTATTCTCTTAGAGACGGAGCAAAGGCGTGGTTAAATTCTTTTGCTCCGGGATCAATTAGGACATAGAATGAGTTAGCGGAAAAATTTCTTAGTAAATACTTTCCACCAACTAGGAATGCCAAGTTGAGGAGTGAGATAGTAGGGTTTAGGCAACTCGAAGATGAAACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATGGTTTACCTTATTGTATCCAAATGGAAACATTTTACAATGGGTTAAATGGAGCAACCCAGGGTATAGTTGATGCTTCGGTTGGAGGGGCCCTTTTGGCAAAAACTTTTCATGAAGCCCATGAAATTTTAGAAAGAATATCAACTAATAGTTGTTAGTGGTCGGATGTTAGAGGCTCAAATAAAAAAGTTAAGAGTGTGTTAGAGGTTGATGGTGTGTCCACCATTAGGGCTGATATTGCAATGTTAGCTAACGCTCTTAAAAATGTGACAGTTGTTAGTCATCAGTAGTTGCCAGCTGTCGAGCCTGCTGCAGTGGTGAACCAAGTTGTAGAGGAATCATGTGTTTATTGTGGTGAAGAGAACAACTACGAGTTTTGCCCCGCAATCCAGCTTCTGTGTTTTTTGTAGGTAATCAGAGGAATAACCCTTATTCTAACCTTTATAATCCAGGTTCGCGAAACCACCCCAACTTTGCAGGGGGAGGACAAAGAAGTAATGTGCAAGTACAACAAAAGGTGAACCAGTCAGGATTTGCTAAATCGTAGGTATTGCCCCAACAAAATAAGCAGGCATTACCCCAGCAAAATTCAGAGAGTTCTCTGGAGGCAATGATGAAAGAATATATGGCTCGTACAGATGTCGCAATTCAAAGTAATCAAGCTTCAATGAGAGCCCTAGAATTGTAAGTGGGCCAGCTAGCTAATTAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCTTCGGATATTGAGCACCCTAGAAGGGAAGGAAAGAAGCAGCTACAGGCAGTGACTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAAAGAGCCCCCCCAGGATGTAGAGAAGAATTGCGATAAAAATGTTGTTGTCGAAAAAGAGTCGGAGTCTGGTAAAGGTGTTGGAGGCAGCAATAATGATGTTGGAGCATCTGGTTTTGTTCCAGATGTGGAACCACCTTATGTGTCGCCCCCACCTTATGTACCATCTCTACCTTTTCCACAAAGGCAAAGGCCTAAGAATGCGGATGGTCAATTTAAGAAGTTTTTAGAGATTCTTAAGCAATTGCATATAAATATCTCATTAGTAGAAGCTATAGAGCAAATGCCTAATTATGCTAAATTTCTCAAGGATATTTTAACTAAAACAAAGAGGTTAGGTGAGTTTGAAACTGTATCTCTTACTGAGGAATGTAGTGTTATTTTTAAGAATGAGCTACCAACCAAGGCTAAGGATCCAGGATCATTTACTATACCTGTTTCAATAGGTGGAAATAAGTTTCTAGGTGTGAGGATGTTTTTGAGTCTTTAGATTTGGATCAAAGGAAAGCTCCTCCTATTAAGTCATCCCTGATCGAGGCACCCACTTTAGATTTGAAGCCCTGCACCCACTTTAGATTTGAAGCCCTTGCCGGATCATCTAAAGTATGTGTATCTATGGGAGGGTGAGACGTTGCCCATTATTGTTGCATCAGATTTAATGCCGAAAGAGGAGAATTCCTTAATAAAGTTGCTACAGCAATATCGTAAAGCAATAGGTTGGACATTGGCTGACATTCGGAATTAGCCCGTCTTTCTATATGCATAAAATCACCCTAGAGAAGGGATCCTTTAGTAGTATTGAGCAACAAAGAAAGCTTAACCCTGCGATGAAAGAGGTTGTTAAAAAAAAGGTGATCAAATGGTTGGATGCTGGGATTATCTATCCAATTGCAGATAGCAATTGGATAAGCCCCATCCAATGTGTTCCTAAGAAATGAGGTGTCACAGTGGTGACTAATAAAGATAATGAGTTGATCCCAACCAGGACAGTAACTGGCTAGAGGGTTTGCATGGATTACAGGATGCTGAACAAAGCCACCCGTAAGGACCATTTCCCTCTACCATTTATTGACCAAATGTTGGATAGATTGGCTGGTCAGGCCTACTACTGTTTCTTAGATGGTTATTCTGGGTATAACCAGATTACCATTGCTCCTGAGGATTAGGAAAAAAACCACTTTAACGTGCCCTTATGGGACGTTTGCTTTTAGGCGAATGCCTTTTGGCCTTTGCAATGCTCCAACAACATTTCAAGGTGTATGTTAGCAATTTTTTTTGATATGATTGAGTCCACTGTTGAGGTATTTATGGACGATTTTTCAGTTTTTGGAGGGTCTTTTCAGCATTGTTTGGATAATTTAGGCAAGGTGTTAAAAGGATGTGAGGATACCCATCTAGTTCTTAATTGGGAGAAATGCCACTTCATGGTGAAGGAGAGCATAGTGTTAGGTCATAAGATCTCAAAGAAAGGTCTAGAAGTTGATCGAGCAAAAATAGAGGTTATTGAGAGATTACAACCACCGAGTTCAATGAAAGGGATTCAGAGTTTTTTAGGTCATGCTGGATTTTATAGAAGGTTCATACAAATTTTTCAAAAATAAGTAAACCTCTTTGTAACTTGTTGTGTGTTGATCATGTTTTTGACTTTAATGAAGATTGTAGGAAGGCTTTTGAAACTTTAAAGTTTGCTTTAGTCTCAGCACCTATTCTATGTGCACCTAACTGGAGTTTACCATTTGAGATAATGTGTGATGCGAGTGATGTTGCAGTAGGTGCCATGCTGGGGAAAAAGCAGGGCAAATTTATCCATCCTATTTATTATGCAAGCAGGGTTTTGAATGAGGCACAAATCAACTATACGACTATTGAAAAGAAGTTGTTAGCGGTTGTGTTTGCCTTTGAGAAATTTCGTCCATATTTGGTTGGATCCAAAGTCACAATTTTCACAGATCATGCAGCAATAAGGTACTGAATATCTAAAAAAGATGCAAAGCCTAGATTGATTTGTTGGGTTTTATTATTGCAGGAATTCGACTTGGAGATAAAGGATAAGAAGGGATCGGAGAATGTCATTGCAGATCATTTGTCTTGTCTTGATCCAACATCATCTTTGCTGAAGCAATCTGCCATTTCAGACTCATTCCCAGATGAACAGCTCTTTACTGTTGAGGTAAAGGTAGTAGAGGATATTCCTTGGTATGCTGATATTGCCAACTTTTTGGTAAAAGGAGTCACTCCTATTGACATGGATTGGAGGCAGATGAAAAAGTTTAAGCATGATGTGAAATTTTTCTATTGGGATGAGCCATTTATGTATAAGCAATGCTCTGATGGTATTATTCATAGATGTGTTTCAGGTGATGAAGCAAAGGAAATCCTGGAGCAATGTCACTCTTCCCCGTATGGAGGCCATTTCATCGGTCAGATGACAGCTATGAGGATTTTGCAATGTGGATTCTTCTGCCCTTCCTTATTTAAGGATGCCCATTGGTTCTACAAGCAATGTGATGCTTGCCAAAGGAAAGGAAATTTGGGGCCTAGAGATGAAATGCCTCTCACTTACATTTTAGAATTGAAATTATTTGATGTATGGGGTATTGATTTTATGGGGTCATTTCCCCCTTCTAATGGTAATGTTTTTATCTTATTGACAGTTGATTACGTGTCCAAGTGGGTGGAGGCCATTGCATGCCATCAGAACGATGCTAAAACGGTATCAAGGTTTCTTCAATCACACATTTTTGCATGGTTGAGTTCCAGTGAGTAATGAGAGTACACATTTTGTTAATAATGTTTTGACTAAGCTTTTAGCTAAGTATGGAATTAAGCATAGGATAGCTACCCCTTATCACCCATAAGCAAATGGTCAAGCTGAAATTAGTAATAGGGAAATTAAATCAATTTTAGAGAAAGTAGTCCATCCATCTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAGCCTATAAGACTCCTCTAGGTATGTCTCCCTTAGGTTAGTGTATGGGAAAGCTTGCCATCTACCGTTAGAGCTTGAGCATAAAACGTTTTGGGCTTTGAAAAAATTGAATTTTGATCTGAGTCGTGCAGGGGCAATAAGAATGTTGCAGCTTAATGAGTTAAAGGAGTTTCGCCAGTTTTCTTATGAAAATGCGAAAATGTATAAAGAGAAGCCTAAGCTATGGCATGATAAGAAATTTAAGCCTAAAGAGTTTGTCAAGGGTCAGAGAGTCTTGCTTTATAACTCTAGATTAAAATTGTTTCCTGGAAAATTGAAATCTAAATGGTCTGGTCCATTTGTGGTGATTGAAGTTTTTCCCCATGGAGCAATTACTTTGCGAGATAAAAAGGATGGGAGAGTATTCAAAGTCAATGGTCAGCGCGTGAAGCATTATTGGGAAGAGGAATTCCAGGCAAAATATCCTTCCCTAAAATTGGTTGATGAATGAGAGAGCGAGAGTTTTGCAGGAGCATTTCACATAGCAATATTTTGAGCTCCCAGTGTTTGTTGCGAGTTTATTTTTCGTTGATTTGGTTTGATTTTAATTCGAATTATTTTGAATTAGATTTGGTTTGTTTAAATCTTATCTAATTTATTTAATTCATTGTTATTTTTTAAATTTCGTAGATCTTATTCTTGGTGTATTTTTATCTTCGCCAGTTTAGTTTATATTTAATTTGATTAGTTTAGTTTAGATTTTAGTTTGTATTTTCGGTTATTTGAATTTCTGTTCAGATTTAGTTTAATAATATAATTTCCTGATTTATTCGGTTTAAGATAAAAAAAGATATGATTTGATTTTGACGGTTTAAATTTGAATTTTCAAGCGTGAAAAGATTCTTCTAGAAGGAGAATTGGTTGCTCAGTTTGTTTTTGCAATCTTTTGGTTGGAGCAACCATATCTTCATAATATTACTGGATTTGTTTAGGAATTAAATATTTTACCTTTTGGATTTTAAAATTTATGTGGGCAGGTAAATGCGTGGGCATCTGGTGCTTCCACGTGTCGCACAGGGGAGATCTAACTGTCTAGCCGTTGGACAGCATATCAAGCATTTATCTGGAAATTTATTTTTACCGTTTTTGAAATTAATCTCCCATGATTACATGCAGGTAAACGGTAACTTTTCGATTAATGAAGGAATTTAATTCGGCCAGGATTTAAAATGCTGGAGCTCCATTTAAATCAAAGACTGGTACGCTTCGCTTTTCATTTTTCTTTCTGCTTCCTCCCTGTTCTTACGAGTGCAAAGAAATTTCCTGATCTGATGGCAAAAACGAGAGGAAAGAAAGAGAGCGAAGTGGAGGAAAATGTGCCTACTACGCCTGAAGTTCTGATGAAAAAGGCGAAGAAGAAAAGAATGCCTGTGGAAAAGGAAGCCAAACAACGAAAGAGACTGCAAAAAGCTGAGGTTTTCGCAGTATTAGAGAAGGTAATAGAGGACATTGCTGAGGAAGTAATCGCGGAAGAAGAACCAAAAGATTCTGCGAAGGAAAAAGATTCTGAGAAGATTGACGGAACGAGGCAATAG

mRNA sequence

ATGAGCGATCCGCCTAGGGTAAGGTTCGAGCTTGATCCAGAAATTGAGAGGACATTCAGGAGAAGAAAAAGAGAGCAGCGTAGAAATCAAAATCCAATGCATAACGTGCCGCGTCTCACACAAGTATTGCCCCAACAAAATAAGCAGGCATTACCCCAGCAAAATTCAGAGAGTTCTCTGGAGGCAATGATGAAAGAATATATGGCTCGTACAGATGTCGCAATTCAAAGGAAACTTCCTTCGGATATTGAGCACCCTAGAAGGGAAGGAAAGAAGCAGCTACAGGCAGTGACTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAAAGAGCCCCCCCAGGATGTAGAGAAGAATTGCGATAAAAATGTTGTTGTCGAAAAAGAGTCGGAGTCTGGTAAAGGATTTAAAATGCTGGAGCTCCATTTAAATCAAAGACTGGTACGCTTCGCTTTTCATTTTTCTTTCTGCTTCCTCCCTGTTCTTACGAGTGCAAAGAAATTTCCTGATCTGATGGCAAAAACGAGAGGAAAGAAAGAGAGCGAAGTGGAGGAAAATGTGCCTACTACGCCTGAAGTTCTGATGAAAAAGGCGAAGAAGAAAAGAATGCCTGTGGAAAAGGAAGCCAAACAACGAAAGAGACTGCAAAAAGCTGAGGTTTTCGCAGTATTAGAGAAGGTAATAGAGGACATTGCTGAGGAAGTAATCGCGGAAGAAGAACCAAAAGATTCTGCGAAGGAAAAAGATTCTGAGAAGATTGACGGAACGAGGCAATAG

Coding sequence (CDS)

ATGAGCGATCCGCCTAGGGTAAGGTTCGAGCTTGATCCAGAAATTGAGAGGACATTCAGGAGAAGAAAAAGAGAGCAGCGTAGAAATCAAAATCCAATGCATAACGTGCCGCGTCTCACACAAGTATTGCCCCAACAAAATAAGCAGGCATTACCCCAGCAAAATTCAGAGAGTTCTCTGGAGGCAATGATGAAAGAATATATGGCTCGTACAGATGTCGCAATTCAAAGGAAACTTCCTTCGGATATTGAGCACCCTAGAAGGGAAGGAAAGAAGCAGCTACAGGCAGTGACTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAAAGAGCCCCCCCAGGATGTAGAGAAGAATTGCGATAAAAATGTTGTTGTCGAAAAAGAGTCGGAGTCTGGTAAAGGATTTAAAATGCTGGAGCTCCATTTAAATCAAAGACTGGTACGCTTCGCTTTTCATTTTTCTTTCTGCTTCCTCCCTGTTCTTACGAGTGCAAAGAAATTTCCTGATCTGATGGCAAAAACGAGAGGAAAGAAAGAGAGCGAAGTGGAGGAAAATGTGCCTACTACGCCTGAAGTTCTGATGAAAAAGGCGAAGAAGAAAAGAATGCCTGTGGAAAAGGAAGCCAAACAACGAAAGAGACTGCAAAAAGCTGAGGTTTTCGCAGTATTAGAGAAGGTAATAGAGGACATTGCTGAGGAAGTAATCGCGGAAGAAGAACCAAAAGATTCTGCGAAGGAAAAAGATTCTGAGAAGATTGACGGAACGAGGCAATAG

Protein sequence

MSDPPRVRFELDPEIERTFRRRKREQRRNQNPMHNVPRLTQVLPQQNKQALPQQNSESSLEAMMKEYMARTDVAIQRKLPSDIEHPRREGKKQLQAVTLRSGKPLEERKEPPQDVEKNCDKNVVVEKESESGKGFKMLELHLNQRLVRFAFHFSFCFLPVLTSAKKFPDLMAKTRGKKESEVEENVPTTPEVLMKKAKKKRMPVEKEAKQRKRLQKAEVFAVLEKVIEDIAEEVIAEEEPKDSAKEKDSEKIDGTRQ
Homology
[Close]
BLAST of Spg034347 vs. NCBI nr
Match: XP_030509057.1 (uncharacterized protein LOC115723720 [Cannabis sativa])

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-05
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 0 

Query: 41  QVLPQQNKQALPQQNSESSLEAMMKEYMARTDV-AIQRKLPSDIEHPRREGKKQLQAVTL 100
           Q  PQQ  Q  PQ +  SSLE++M++YMA+ D    Q  LPSD E+PRR+GKK  +AVTL
Sbjct: 93  QPRPQQPHQ--PQGSQTSSLESLMRDYMAKNDANRPQGTLPSDTENPRRDGKKHCKAVTL 152

Query: 101 RSGKPLEERKEPPQDVEKNCDKNVVVEKESESGKGFKMLELHLNQRLVR 149
           RSGK +E         E +      ++KE E  K  +     + +RL R
Sbjct: 153 RSGKIIESNVAATGSKEPSS-----IQKEGEMKKNPEFQFFEIPKRLQR 194

[Close]
BLAST of Spg034347 vs. NCBI nr
Match: XP_022159345.1 (uncharacterized protein LOC111025764 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-04
Identity = 45/118 (38.14%), Postives = 54/118 (45.76%), Query Frame = 0 

Query: 30  QNPMHNVPRLTQVLP------QQNKQALPQQNSESSLEAMMKEYMARTDVAIQRK----- 89
           QN    VP   Q +P       Q  Q  P QN+ S+LE MMKEYMARTD  IQ +     
Sbjct: 171 QNKQPYVPPTQQYIPPPQQRYNQRTQTPPVQNNNSNLENMMKEYMARTDAVIQSQAASMR 230

Query: 90  --------------------LPSDIEHPRREGKKQLQAVTLRSGKPLEERKEPPQDVE 117
                                P   E P+REGK+Q +AVTLRSG   +E   P  DV+
Sbjct: 231 NFETQLGQLANELKNRPQGSFPXHTELPKREGKEQCKAVTLRSGLAYDEPTMPTADVQ 288

[Close]
BLAST of Spg034347 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 45/118 (38.14%), Postives = 54/118 (45.76%), Query Frame = 0 

Query: 30  QNPMHNVPRLTQVLP------QQNKQALPQQNSESSLEAMMKEYMARTDVAIQRK----- 89
           QN    VP   Q +P       Q  Q  P QN+ S+LE MMKEYMARTD  IQ +     
Sbjct: 171 QNKQPYVPPTQQYIPPPQQRYNQRTQTPPVQNNNSNLENMMKEYMARTDAVIQSQAASMR 230

Query: 90  --------------------LPSDIEHPRREGKKQLQAVTLRSGKPLEERKEPPQDVE 117
                                P   E P+REGK+Q +AVTLRSG   +E   P  DV+
Sbjct: 231 NFETQLGQLANELKNRPQGSFPXHTELPKREGKEQCKAVTLRSGLAYDEPTMPTADVQ 288

[Close]
BLAST of Spg034347 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.7e-04
Identity = 45/118 (38.14%), Postives = 53/118 (44.92%), Query Frame = 0 

Query: 30  QNPMHNVPRLTQVLP------QQNKQALPQQNSESSLEAMMKEYMARTDVAIQRK----- 89
           QN    VP   Q +P       Q  Q  P QN+ S+LE MMKEYMARTD  IQ +     
Sbjct: 398 QNKQPYVPPTQQHIPPPQQQYNQRTQTPPIQNNNSNLENMMKEYMARTDAVIQSQAASMR 457

Query: 90  --------------------LPSDIEHPRREGKKQLQAVTLRSGKPLEERKEPPQDVE 117
                                P   E PRREGK+Q +AVTLRSG   +    P  DV+
Sbjct: 458 NFGTQLGHLANELKNRPQGSFPGHTELPRREGKEQCKAVTLRSGLTYDGPTMPTTDVQ 515

The following BLAST results are available for this feature:
BLAST of Spg034347 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_030509057.15.6e-0541.28uncharacterized protein LOC115723720 [Cannabis sativa][more]
XP_022159345.13.6e-0438.14uncharacterized protein LOC111025764 [Momordica charantia][more]
BLAST of Spg034347 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034347 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DYG01.8e-0438.14uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DW028.7e-0438.14uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Spg034347 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034347.1Spg034347.1mRNA