Spg030454.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg030454.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein of unknown function (DUF1218)
Location	scaffold6: 34205726 .. 34206901 (+)
Sequence length	219
RNA-Seq Expression	Spg030454.1
Synteny	Spg030454.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAATAAAGGAAAAGCAGAAAAAAGCACTAGTCACCTTTCGAAGTTCTGCAGAGTGATCATCTCCTTTGGTACCTCACTCTTAATTTTTTTAACACAAGCGACACCACCGCCACCAACTTTACGTTTTCGTGCTACTGCTTTAAGCAAACAGCCAAAGATTGGCCAATACAACAACAAAAGCAAAACCAAAACCAAAACCCACAACAGAAAGAAAGGGGTTTGAGACTTCACATAAAGCCCTTATGTGAAACAATCCTCCTCTTCATTACAGAGAAAGAAGGATGGAGAGAAAGGTTTTGGTGGTGTGTTCAATTGTGGGTTTATTGGGAATTTTGTCAGCTGTTACTGGTTTTGTTGCTGAGGCTACAAGAATCAAGGTGATTTTTGTGATTTTTGCTTCGACCCATCTTTAGCTTCCTCTCATTTGGCCTTTTTTACATTAGATTTTTACTTGCATTTGGTTTTTTGTATGTGGGATTTTCTTGTATTTTGCGATCTTTCTCTTGGCTGCTGAAATTGCGAGGAAAATGGAAGGGGGATAGTTTGGTGTACATATTTCTTTTTCTTGTTGAGGTCTCTTGTCGGCTTTAGAAGCCACTGTATCTTATTGCAATGGTTGAAGTTCTGTTGATGTTCCGATTGTTCGAAACTACTAAATTTATGAGTACTGTTTTAGTTTTTCTCATGTCTGTTCATAGTTTCTCACTGAATCAACGTACAACTCCTGATTCAGATTGGTGCTTGGGATCAATGGTGCCTTTGTTTATTTCTTTCTTTTTTTTCTTTTTTTTCTTCTTCTCTTCTGCTCATTGAAGCTTGGAGAGATTGAACTATGTAAGGACCAAAGAAATTTGAGTTGTAAAATGTCCCATTTTTGTTGGATTTAGAGAGGAGGAACTGGAAAGTTCTAATAGTTAGTTGACCCATAATATAAGATGTCTTATGAGTTGCTTGACACAGAATGCTGCAGTTGGCAGTTGTTTCATGGGATTAATCAAGTACGTTTAAGTTGGTCTAGACACCCACAATTGTGAAAAAGAAAAGAGTAAATATGGAGTTGTAACAATGATTGTGACACTGGTTCTTAGGATTGAAGCTCCTTGTTGTCCTTGTGTATTTGTTTCTCAAGCATTAGCTTTGTATGCCGCTGGTTCAAAAATTGGCTTTGATTGA

mRNA sequence

ATGGAGAGAAAGGTTTTGGTGGTGTGTTCAATTGTGGGTTTATTGGGAATTTTGTCAGCTGTTACTGGTTTTGTTGCTGAGGCTACAAGAATCAAGAATGCTGCAGTTGGCAGTTGTTTCATGGGATTAATCAAGATTGAAGCTCCTTGTTGTCCTTGTGTATTTGTTTCTCAAGCATTAGCTTTGTATGCCGCTGGTTCAAAAATTGGCTTTGATTGA

Coding sequence (CDS)

ATGGAGAGAAAGGTTTTGGTGGTGTGTTCAATTGTGGGTTTATTGGGAATTTTGTCAGCTGTTACTGGTTTTGTTGCTGAGGCTACAAGAATCAAGAATGCTGCAGTTGGCAGTTGTTTCATGGGATTAATCAAGATTGAAGCTCCTTGTTGTCCTTGTGTATTTGTTTCTCAAGCATTAGCTTTGTATGCCGCTGGTTCAAAAATTGGCTTTGATTGA

Protein sequence

MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAVGSCFMGLIKIEAPCCPCVFVSQALALYAAGSKIGFD

Homology

[Close]

BLAST of Spg030454.1 vs. NCBI nr
Match: XP_038874324.1 (uncharacterized protein LOC120067025 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-06
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MERKVLVVCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. NCBI nr
Match: XP_008467305.1 (PREDICTED: uncharacterized protein LOC103504685 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-06
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MERKVLVVCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. NCBI nr
Match: XP_004143661.1 (uncharacterized protein LOC101216661 [Cucumis sativus] >KGN50361.1 hypothetical protein Csa_000554 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-06
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MERKVLVVCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. NCBI nr
Match: XP_022995248.1 (uncharacterized protein LOC111490852 [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MER+VL+VCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERRVLMVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. NCBI nr
Match: XP_023532125.1 (uncharacterized protein LOC111794385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MER+VL+VCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERRVLMVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. ExPASy TrEMBL
Match: A0A0A0KRK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168970 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MERKVLVVCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. ExPASy TrEMBL
Match: A0A1S3CT83 (uncharacterized protein LOC103504685 OS=Cucumis melo OX=3656 GN=LOC103504685 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MERKVLVVCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERKVLVVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. ExPASy TrEMBL
Match: A0A6J1K7C7 (uncharacterized protein LOC111490852 OS=Cucurbita maxima OX=3661 GN=LOC111490852 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MER+VL+VCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERRVLMVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. ExPASy TrEMBL
Match: A0A6J1H3L5 (uncharacterized protein LOC111459709 OS=Cucurbita moschata OX=3662 GN=LOC111459709 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MER+VL+VCS+VGLLGILSAVTGFVAEATRIK + V
Sbjct: 1  MERRVLMVCSVVGLLGILSAVTGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. ExPASy TrEMBL
Match: A0A6J1DXZ3 (uncharacterized protein LOC111025191 OS=Momordica charantia OX=3673 GN=LOC111025191 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MER+VLVVCS+VGLLGILSA TGFVAEATRIK + V
Sbjct: 1  MERRVLVVCSVVGLLGILSAATGFVAEATRIKGSQV 36

[Close]

BLAST of Spg030454.1 vs. TAIR 10
Match: AT5G17210.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-05
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MERKVLVVCSIVGLLGILSAVTGFVAEATRIKNAAV 37
          MER+ +V+C ++ LLG+LSAVT FVAEATRIK + V
Sbjct: 1  MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQV 36

The following BLAST results are available for this feature:

BLAST of Spg030454.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874324.1	7.0e-06	88.89	uncharacterized protein LOC120067025 [Benincasa hispida]	[more]
XP_008467305.1	7.0e-06	88.89	PREDICTED: uncharacterized protein LOC103504685 [Cucumis melo]	[more]
XP_004143661.1	7.0e-06	88.89	uncharacterized protein LOC101216661 [Cucumis sativus] >KGN50361.1 hypothetical ...	[more]
XP_022995248.1	3.5e-05	83.33	uncharacterized protein LOC111490852 [Cucurbita maxima]	[more]
XP_023532125.1	3.5e-05	83.33	uncharacterized protein LOC111794385 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg030454.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030454.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRK6	3.4e-06	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168970 PE=4 SV=1	[more]
A0A1S3CT83	3.4e-06	88.89	uncharacterized protein LOC103504685 OS=Cucumis melo OX=3656 GN=LOC103504685 PE=...	[more]
A0A6J1K7C7	1.7e-05	83.33	uncharacterized protein LOC111490852 OS=Cucurbita maxima OX=3661 GN=LOC111490852...	[more]
A0A6J1H3L5	1.7e-05	83.33	uncharacterized protein LOC111459709 OS=Cucurbita moschata OX=3662 GN=LOC1114597...	[more]
A0A6J1DXZ3	2.2e-05	83.33	uncharacterized protein LOC111025191 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Spg030454.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17210.1	1.7e-05	63.89	Protein of unknown function (DUF1218)	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg030454	Spg030454	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg030454.1-five_prime_utr	Spg030454.1-five_prime_utr-scaffold6:34205726..34206009	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg030454.1-cds	Spg030454.1-cds-scaffold6:34206010..34206105	CDS
Spg030454.1-cds	Spg030454.1-cds-scaffold6:34206689..34206726	CDS
Spg030454.1-cds	Spg030454.1-cds-scaffold6:34206817..34206901	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg030454.1	Spg030454.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane