Spg026196 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026196
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold7: 3420699 .. 3421997 (-)
RNA-Seq Expression	Spg026196
Synteny	Spg026196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATGTCGCGACGCTGTCTTCCACACCGCCAGAACACATAAGGAAATTGTCACAGCGTCGAGACGCTAAGGGACAGCGTCGAGACGTTGTCTCTGCTGTCGCCCAAAACAGAATAGGAAGGTTTCTAGTGTCGAAACGCCACAAGAGCAGCGTCGAAACGCTAGCTCTCGAGTATGCCCACTTTGTTAGGCCTCCAACTTGATTCTTCTTTGCTTCTTTGGCTTCTTTTGGTGTCCCGAACATCCAATTAACTCCAATTTCTCCAATTAAGCTCCAATAATCAATTCCTACAAAAATAAACATTAAAGTGCATTAAAATGGCCAAAATTTCTCAAAGACTAACTATAATAGATAGGGAAAAATAGCTTGCTATGCTCGCTATCAGATTTCATTCTCACTGTCTTGAGCTCTTCTAGAGGGCATATAGGCACAACAATTAGTTCTAGTAAAGGGTGGTGGAAGTTCACAGGGTTCTATGGTAACCCCGATCCATCTAAGCATAATGAGTCCTGGGATCTCTTAAACAGGATCAGTGATACCCATAATGGCCCGTGGATCATTGGTGGGGACTTCAACGAGATTTTGAAAAGCGATGAAAATGAGGGAGGTAGGCTTAGAAGCCAAAGTCAAATGGATAACTTTAAAAGACACTATCGACAGCTGCAAGCTTATTGATTTGGGCTATGCGAGAGATAAATTCACTTGGAGAAGAGGTAGAGGTTCGGACCCCTGGATTAGAGAAAGACTCGATCGATTCTTTGCTAATCATGAGATGATTTTCGTGGTGTGTAGAACCATCAACGTTGTTATCAGAGCAGTGGAAGCAAAGGTCTCGAAAGGGAAGATTTACCTCAGTTCTGAAGCAGCTTTAGGGCCTTCAAGAGCGAATACCCTACCGAGTCAAGCCCACTGGATCCCTCCACCTCCTGGTACATGGAAGCTCAATGTGGAAGCCTCTCGTGATGAATCCCAAAGCAGAGGAGGGGTGGGTTGGATCATGCGTGACTCTTCAGGTTCTACTATCTGTGCAGGCCTAAAAAGAATCAACGACAATTGGTCAGTGAAGATGCTTGAGATGAGAGCGATCCTCGAAGGGTTGAGATGCTTACCGACCATCAGGGCTTCGCACCCAAATCTGGACATTCCGCCTATCGAGATGGTTTCTGACGCCATTGGCGTGATCAATCTACTTAATAATGTAGACTCAGACCAATCGGAGATCTCCTTTTTGGTCGATGAAATTGAGCGCCTGATTGCCGAGCATGAGAAAATCCCTTTTGCTCACAGCCCATGA

mRNA sequence

ATGGACAATGTCGCGACGCTGTCTTCCACACCGCCAGAACACATAAGGAAATTGTCACAGCGTCGAGACGCTAAGGGACAGCGTCGAGACGTTGTCTCTGCTGTCGCCCAAAACAGAATAGGAAGAGGGCATATAGGCACAACAATTAGTTCTAGTAAAGGGTGGTGGAAGTTCACAGGGTTCTATGGTAACCCCGATCCATCTAAGCATAATGAGTCCTGGGATCTCTTAAACAGGATCAGGAAGATTTACCTCAGTTCTGAAGCAGCTTTAGGGCCTTCAAGAGCGAATACCCTACCGAGTCAAGCCCACTGGATCCCTCCACCTCCTGGTACATGGAAGCTCAATGTGGAAGCCTCTCGTGATGAATCCCAAAGCAGAGGAGGGGTGGGTTGGATCATGCGTGACTCTTCAGGTTCTACTATCTGTGCAGGCCTAAAAAGAATCAACGACAATTGGTCAGTGAAGATGCTTGAGATGAGAGCGATCCTCGAAGGGTTGAGATGCTTACCGACCATCAGGGCTTCGCACCCAAATCTGGACATTCCGCCTATCGAGATGGTTTCTGACGCCATTGGCGTGATCAATCTACTTAATAATGTAGACTCAGACCAATCGGAGATCTCCTTTTTGGTCGATGAAATTGAGCGCCTGATTGCCGAGCATGAGAAAATCCCTTTTGCTCACAGCCCATGA

Coding sequence (CDS)

ATGGACAATGTCGCGACGCTGTCTTCCACACCGCCAGAACACATAAGGAAATTGTCACAGCGTCGAGACGCTAAGGGACAGCGTCGAGACGTTGTCTCTGCTGTCGCCCAAAACAGAATAGGAAGAGGGCATATAGGCACAACAATTAGTTCTAGTAAAGGGTGGTGGAAGTTCACAGGGTTCTATGGTAACCCCGATCCATCTAAGCATAATGAGTCCTGGGATCTCTTAAACAGGATCAGGAAGATTTACCTCAGTTCTGAAGCAGCTTTAGGGCCTTCAAGAGCGAATACCCTACCGAGTCAAGCCCACTGGATCCCTCCACCTCCTGGTACATGGAAGCTCAATGTGGAAGCCTCTCGTGATGAATCCCAAAGCAGAGGAGGGGTGGGTTGGATCATGCGTGACTCTTCAGGTTCTACTATCTGTGCAGGCCTAAAAAGAATCAACGACAATTGGTCAGTGAAGATGCTTGAGATGAGAGCGATCCTCGAAGGGTTGAGATGCTTACCGACCATCAGGGCTTCGCACCCAAATCTGGACATTCCGCCTATCGAGATGGTTTCTGACGCCATTGGCGTGATCAATCTACTTAATAATGTAGACTCAGACCAATCGGAGATCTCCTTTTTGGTCGATGAAATTGAGCGCCTGATTGCCGAGCATGAGAAAATCCCTTTTGCTCACAGCCCATGA

Protein sequence

MDNVATLSSTPPEHIRKLSQRRDAKGQRRDVVSAVAQNRIGRGHIGTTISSSKGWWKFTGFYGNPDPSKHNESWDLLNRIRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHEKIPFAHSP

Homology

[Close]

BLAST of Spg026196 vs. NCBI nr
Match: ABA94760.1 (Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-12
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 80  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSG 139
           + +  +S+    GP    T  ++ HW  P  G  KLNV+ S D  + +GG+G I+RD+SG
Sbjct: 302 VSRSVISALRRRGPDGPPTASTRLHWEKPRLGWMKLNVDGSFDADRGKGGIGMILRDNSG 361

Query: 140 STICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLN 199
           ST+ A  K ++   +    E+RA +EGL     I A      + PI + +D + ++NLL 
Sbjct: 362 STVFAACKSLDSCKNALEAEIRACMEGL-----ILAL--QWTMRPILIETDCVSLVNLLK 421

Query: 200 NVDSDQSEISFLVDEIERLIAEHEKI 226
             + D SE++ LV EI+RL++E  ++
Sbjct: 422 EGNRDLSELANLVQEIKRLLSERREV 440

[Close]

BLAST of Spg026196 vs. NCBI nr
Match: XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-12
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 80  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSG 139
           + +  +S+    GP    T  ++ HW  P  G  KLNV+ S D  + +GG+G I+RD+SG
Sbjct: 298 VSRSVISALRRRGPDGPPTASTRLHWEKPRLGWMKLNVDGSFDADRGKGGIGMILRDNSG 357

Query: 140 STICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLN 199
           ST+ A  K ++   +    E+RA +EGL     I A      + PI + +D + ++NLL 
Sbjct: 358 STVFAACKSLDSCKNALEAEIRACMEGL-----ILAL--QWTMRPILIETDCVSLVNLLK 417

Query: 200 NVDSDQSEISFLVDEIERLIAEHEKI 226
             + D SE++ LV EI+RL++E  ++
Sbjct: 418 EGNRDLSELANLVQEIKRLLSERREV 436

[Close]

BLAST of Spg026196 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-12
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 103 AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRA 162
           A W PP   +WKLN  A+     + GG+GWI+RD  G  I A  + I    ++  LE+ A
Sbjct: 77  AQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMA 136

Query: 163 ILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEH 222
           I EGLR    IR  H      PI + SD++  I+LL+    DQ+EI +L++EI +++ + 
Sbjct: 137 ICEGLR---AIRQEH----CRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDM 196

Query: 223 EKIPFAH 230
           E +   H
Sbjct: 197 EIVSMRH 196

[Close]

BLAST of Spg026196 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-11
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 103 AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRA 162
           A W PP   +WKLN +A+     + GG+GWI+RD  G  I A  + I    ++  LE+ A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 163 ILEGLRCLPTIRASH----PNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERL 222
           I EGLR    IR  H          PI + SD++  I+LL+    DQ+EI +L++EI ++
Sbjct: 137 ICEGLR---AIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQM 196

Query: 223 IAEHEKIPFAH 230
           + + + +   H
Sbjct: 197 MEDMKIVSMRH 204

[Close]

BLAST of Spg026196 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-11
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 98  TLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKM 157
           TL ++  W PPP   W LN +AS  +S  RGG+GWI+R   G  + AG + +    +VK+
Sbjct: 64  TLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKL 123

Query: 158 LEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIER 217
           LE  AILEGLR L  +        + P+ + +D+  V +LLN    D ++  ++V+EI  
Sbjct: 124 LEASAILEGLRNLTNLGV------LRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILN 183

Query: 218 LIAEHEKIPFA 229
           L    E + FA
Sbjct: 184 LRDSCEILAFA 188

[Close]

BLAST of Spg026196 vs. ExPASy TrEMBL
Match: Q2R147 (Protein kinase domain containing protein, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g40380 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-13
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 80  IRKIYLSSEAALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSG 139
           + +  +S+    GP    T  ++ HW  P  G  KLNV+ S D  + +GG+G I+RD+SG
Sbjct: 302 VSRSVISALRRRGPDGPPTASTRLHWEKPRLGWMKLNVDGSFDADRGKGGIGMILRDNSG 361

Query: 140 STICAGLKRINDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLN 199
           ST+ A  K ++   +    E+RA +EGL     I A      + PI + +D + ++NLL 
Sbjct: 362 STVFAACKSLDSCKNALEAEIRACMEGL-----ILAL--QWTMRPILIETDCVSLVNLLK 421

Query: 200 NVDSDQSEISFLVDEIERLIAEHEKI 226
             + D SE++ LV EI+RL++E  ++
Sbjct: 422 EGNRDLSELANLVQEIKRLLSERREV 440

[Close]

BLAST of Spg026196 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-13
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 103 AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRA 162
           A W PP   +WKLN  A+     + GG+GWI+RD  G  I A  + I    ++  LE+ A
Sbjct: 77  AQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMA 136

Query: 163 ILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEH 222
           I EGLR    IR  H      PI + SD++  I+LL+    DQ+EI +L++EI +++ + 
Sbjct: 137 ICEGLR---AIRQEH----CRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDM 196

Query: 223 EKIPFAH 230
           E +   H
Sbjct: 197 EIVSMRH 196

[Close]

BLAST of Spg026196 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.0e-12
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 103 AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRA 162
           A W PP   +WKLN +A+     + GG+GWI+RD  G  I A  + I    ++  LE+ A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 163 ILEGLRCLPTIRASH----PNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERL 222
           I EGLR    IR  H          PI + SD++  I+LL+    DQ+EI +L++EI ++
Sbjct: 137 ICEGLR---AIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQM 196

Query: 223 IAEHEKIPFAH 230
           + + + +   H
Sbjct: 197 MEDMKIVSMRH 204

[Close]

BLAST of Spg026196 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 98  TLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKM 157
           TL ++  W PPP   W LN +AS  +S  RGG+GWI+R   G  + AG + +    +VK+
Sbjct: 64  TLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKL 123

Query: 158 LEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIER 217
           LE  AILEGLR L  +        + P+ + +D+  V +LLN    D ++  ++V+EI  
Sbjct: 124 LEASAILEGLRNLTNLGV------LRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILN 183

Query: 218 LIAEHEKIPFA 229
           L    E + FA
Sbjct: 184 LRDSCEILAFA 188

[Close]

BLAST of Spg026196 vs. ExPASy TrEMBL
Match: B8AFN2 (RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_06781 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 0


Query: 104 HWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEMRAI 163
           HW+ P  G  KLNV+ S D +  +GG+G ++RDSSG+TI A  K +N        E+RA 
Sbjct: 156 HWVKPQVGWMKLNVDGSFDAALCKGGIGMVLRDSSGNTIFASCKPLNRCTGALESELRAC 215

Query: 164 LEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIAEHE 223
           +EGL  +        +  + PI + +D + V+ LLN+ + D+SE++ +V E +RL+A   
Sbjct: 216 VEGLNLV-------LHWTLLPILVETDCMSVVQLLNDGERDRSELANIVHEAKRLLAGTR 270

Query: 224 KI 226
           +I
Sbjct: 276 RI 270

[Close]

BLAST of Spg026196 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-06
Identity = 40/142 (28.17%), Postives = 65/142 (45.77%), Query Frame = 0


Query: 90  ALGPSRANTLPSQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRI 149
           A GP     L  Q  W  PP    K N +A+      R G+GWI+R+ SG  +  G + +
Sbjct: 124 ASGPQVERNLSVQ--WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARAL 183

Query: 150 NDNWSVKMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEIS 209
               +V    + A LE LR      +     +   I   SDA  ++NLLN+ D     + 
Sbjct: 184 PRTKNV----LEAELEALRWAVLTMS---RFNYKRIIFESDAQALVNLLNS-DDFWPTLQ 243

Query: 210 FLVDEIERLIAEHEKIPFAHSP 232
             +++I++L+   E++ F  +P
Sbjct: 244 PALEDIQQLLHHFEEVKFEFTP 255

[Close]

BLAST of Spg026196 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 31/131 (23.66%), Postives = 60/131 (45.80%), Query Frame = 0


Query: 101 SQAHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSVKMLEM 160
           S   W PPP    K N +A+ +    R G+GW++R+  G     G + +    SV   E+
Sbjct: 416 SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAEL 475

Query: 161 RAILEGLRCLPTIRASHPNLDIPPIEMVSDAIGVINLLNNVDSDQSEISFLVDEIERLIA 220
            A+   +  L   + ++       +   SD+  +I +LNN D     +   + +++RL++
Sbjct: 476 EAMRWAVLSLSRFQYNY-------VIFESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLS 535

Query: 221 EHEKIPFAHSP 232
           +  ++ F   P
Sbjct: 536 QFTEVKFVFIP 538

[Close]

BLAST of Spg026196 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 7.8e-04
Identity = 34/134 (25.37%), Postives = 54/134 (40.30%), Query Frame = 0


Query: 97  NTLPSQ-AHWIPPPPGTWKLNVEASRDESQSRGGVGWIMRDSSGSTICAGLKRINDNWSV 156
           N  PS+   W PP     K N +AS  E  +  G+GWI+R+S G+ I  G+ +       
Sbjct: 96  NADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGK------- 155

Query: 157 KMLEMRAILEGLRCLPTIRASHPNLDIPPIEMVSDAIG-VINLLNNVDSDQSEISFLVDE 216
              + R   E   C   I A   +      +++ +     I  + N  S    +   +D 
Sbjct: 156 --FQGRMTTEEAECSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDT 215

Query: 217 IERLIAEHEKIPFA 229
           I+  I   E I F+
Sbjct: 216 IQSWIPSFESIEFS 220

The following BLAST results are available for this feature:

BLAST of Spg026196 vs. NCBI nr


Match Name	E-value	Identity	Description
ABA94760.1	1.5e-12	34.25	Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group...	[more]
XP_025877173.1	1.5e-12	34.25	uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X...	[more]
XP_022143535.1	1.9e-12	37.01	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	1.2e-11	35.11	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022155262.1	1.6e-11	36.64	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of Spg026196 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q2R147	7.1e-13	34.25	Protein kinase domain containing protein, expressed OS=Oryza sativa subsp. japon...	[more]
A0A6J1CP26	9.2e-13	37.01	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	6.0e-12	35.11	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DNV9	7.8e-12	36.64	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
B8AFN2	1.0e-11	36.89	RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_...	[more]

BLAST of Spg026196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	4.9e-06	28.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	1.1e-05	23.66	Ribonuclease H-like superfamily protein	[more]
AT5G65005.1	7.8e-04	25.37	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 111..231 e-value: 1.5E-8 score: 36.7
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 117..230 e-value: 1.6E-12 score: 47.3
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 102..229
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 102..229
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 115..231 e-value: 1.21972E-12 score: 60.7908
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 112..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026196.1	Spg026196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity