Spg024383 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024383
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC110412945
Locationscaffold4: 23031185 .. 23032786 (-)
RNA-Seq ExpressionSpg024383
SyntenySpg024383
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATGTGTATCCACTCCTTGACCTTGATCCGGAGATAGAAAGAACCTTTCGTCGTCGTAGGAAGGAACAAAGACGAAAGAGAAGGGAACAACAAGAGTTGAGCGCACAAGAACCTCTCGAAAAAGCTTCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCGCAAGTTGATCCACAGAATCGTGGAAGGGAGCAAAATGGTGGGAGAATTCCTCCTGTTCCTCCAGTTCCACCGATGCCACAATAAGAAAACCCAATTTATATTGCTGAAGACCGAAATAGAGCAATAAGGGACTATGCTTTACCAGTTTTTCAGACTTTAGATCCAGGAATTTTGGAGCCACCGATAGATGCTCCACAGTTTGAACTTAAACCACTGATGTTCCAAATGTTGAATACCATGGGCCAATTCTTTGGACTTTCAGATGAAGATCCACACAAACACATTAAACTATTTTTTAGAGTTTGCAATTCTTTTAAAGTTACAGGAGTGCCTGAAGATACTTTGAAGCTAAAGCTTTTTCCATTTTCTTTGCAGGGAGATGCTGAAGCTTGGTTGGATTCATTCCCTCCAAATTCCATCACTTCTTGGAATGATTTGGCTGAGAAATTTTTAGAGATGTTTTTTCCTTCTAATAAAAATGCCAAGTATAGAGCTGGAATTATTGCTTTCAGACAATCTTATAATGAACCTTTAGATGCAGCTTGGGAAAGATTTTAAAGGCTAGTTCGGAAGTGTCCACACCACGAATTGTCTGCTTGCATCATCTTGGAGCATTTTTATAGTGGATTAGATCAAGCTTCGAAGGCATTAGTCAATGCATCTGCAAACGGATCTTTCTTGAAGAAGTCTGCAAATGAGTCACATGCTATCTTGGACACCATAGCCACAAACAATCGCCATTGGGGAGAGACTGAGCCAACCACAATCTTGAAGAATCCAGTTAAAGCAATGGAAACAGAGGCTAACTCTACGATGCAAGCCCATATCAAGGCTATCCATATCATGATGATGTGCATGACTATGAACAATCAAGCCAACATAGCCCTTGCCAATGCTATCTCTTCTCCCTGTTGTGAAATTTGTGGTGACGAACACATCGCTGATAATTGTCCACTAAATCCCACGTCTGTATTTTATGTAGGTCAACAGGGGAACCAGAATAAGAATAGATGGAATCCTTCCTTGGCAACGTACAACCCAGGTTGGAGACAACATCCAAATTTCTCTTGGGGAGGACAAGCCGGGTCGAGTAATTCCAATACAAACCAATTTGGGAAGCCTCCTACACAACAACAACCGCAGAAGAACTTCCAACAAGTCCAAGTGTAGAGTCAAGAGTCAAATCTAGAGACTCTTATGAAGGAGTACATGGCAAGAAATGATGCTGCAGTAAGGAATTTGGAAGTACAACTTGGACAGATTGCTCAGGAGATTAAAAACAGACCACAAGGGACGTTGCCAAGAAAGACTGAGATCCCTCACAGAGAAGGAAAGGAGCAATGCAAGGCAGTGACATTAAGAAGTGGATTAGAATATGATGGCAAGAAGCAGAAATCCCAGAAAAAGCTCGAGAAAATAATTTAG

mRNA sequence

ATGAACAATGTGTATCCACTCCTTGACCTTGATCCGGAGATAGAAAGAACCTTTCGTCGTCGTAGGAAGGAACAAAGACGAAAGAGAAGGGAACAACAAGAGTTGAGCGCACAAGAACCTCTCGAAAAAGCTTCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCGCAAGTTGATCCACAGAATCGTGGAAGGGAGCAAAATGCCACAAACAATCGCCATTGGGGAGAGACTGAGCCAACCACAATCTTGAAGAATCCAGTTAAAGCAATGGAAACAGAGGCTAACTCTACGATGCAAGCCCATATCAAGGCTATCCATATCATGATGATGTGCATGACTATGAACAATCAAGCCAACATAGCCCTTGCCAATGCTATCTCTTCTCCCTGTTGTGAAATTTGTGGTGACGAACACATCGCTGATAATTGTCCACTAAATCCCACGTCTAGTCAAGAGTCAAATCTAGAGACTCTTATGAAGGAGTACATGGCAAGAAATGATGCTGCAGTAAGGAATTTGGAAGTACAACTTGGACAGATTGCTCAGGAGATTAAAAACAGACCACAAGGGACGTTGCCAAGAAAGACTGAGATCCCTCACAGAGAAGGAAAGGAGCAATGCAAGGCAGTGACATTAAGAAGTGGATTAGAATATGATGGCAAGAAGCAGAAATCCCAGAAAAAGCTCGAGAAAATAATTTAG

Coding sequence (CDS)

ATGAACAATGTGTATCCACTCCTTGACCTTGATCCGGAGATAGAAAGAACCTTTCGTCGTCGTAGGAAGGAACAAAGACGAAAGAGAAGGGAACAACAAGAGTTGAGCGCACAAGAACCTCTCGAAAAAGCTTCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCGCAAGTTGATCCACAGAATCGTGGAAGGGAGCAAAATGCCACAAACAATCGCCATTGGGGAGAGACTGAGCCAACCACAATCTTGAAGAATCCAGTTAAAGCAATGGAAACAGAGGCTAACTCTACGATGCAAGCCCATATCAAGGCTATCCATATCATGATGATGTGCATGACTATGAACAATCAAGCCAACATAGCCCTTGCCAATGCTATCTCTTCTCCCTGTTGTGAAATTTGTGGTGACGAACACATCGCTGATAATTGTCCACTAAATCCCACGTCTAGTCAAGAGTCAAATCTAGAGACTCTTATGAAGGAGTACATGGCAAGAAATGATGCTGCAGTAAGGAATTTGGAAGTACAACTTGGACAGATTGCTCAGGAGATTAAAAACAGACCACAAGGGACGTTGCCAAGAAAGACTGAGATCCCTCACAGAGAAGGAAAGGAGCAATGCAAGGCAGTGACATTAAGAAGTGGATTAGAATATGATGGCAAGAAGCAGAAATCCCAGAAAAAGCTCGAGAAAATAATTTAG

Protein sequence

MNNVYPLLDLDPEIERTFRRRRKEQRRKRREQQELSAQEPLEKASYIQEFPMEPPGVDPQVDPQNRGREQNATNNRHWGETEPTTILKNPVKAMETEANSTMQAHIKAIHIMMMCMTMNNQANIALANAISSPCCEICGDEHIADNCPLNPTSSQESNLETLMKEYMARNDAAVRNLEVQLGQIAQEIKNRPQGTLPRKTEIPHREGKEQCKAVTLRSGLEYDGKKQKSQKKLEKII
Homology
BLAST of Spg024383 vs. NCBI nr
Match: XP_030494802.1 (uncharacterized protein LOC115710583 [Cannabis sativa])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-18
Identity = 77/220 (35.00%), Postives = 105/220 (47.73%), Query Frame = 0

Query: 69  EQNATNNRHWGETEPTTILKNPVKAMETEANSTMQAHIKAIHIMMMCMTMNNQANIALAN 128
           E+ A+NN  W      T  K     +E +A + + A + ++  ++  M M      A   
Sbjct: 154 ERIASNNYQWSTNRAPTSRK-VAGVLEVDALTALTAQMASMTNILKNMNMGGSVQPAATI 213

Query: 129 AISSPCCEICGDEHIADNCPLNPTS----------------------------------- 188
             +   C  CGD H  +NCP NP S                                   
Sbjct: 214 QRAEISCVYCGDGHTFENCPSNPASVCYVGASSSGAEQAQGKQSFPPGFSQQPRPQQPHQ 273

Query: 189 ---SQESNLETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIP 236
              SQ S+LE+LM++YMA+NDA +       +NLE+QLGQ+A ++KNRPQGTLP  TE P
Sbjct: 274 PQGSQTSSLESLMRDYMAKNDAVIQSQAASLQNLEIQLGQLANDLKNRPQGTLPSDTENP 333

BLAST of Spg024383 vs. NCBI nr
Match: XP_022159345.1 (uncharacterized protein LOC111025764 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 7.0e-18
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 151 PTSSQESNLETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIP 210
           P  +  SNLE +MKEYMAR DA +       RN E QLGQ+A E+KNRPQG+ P  TE+P
Sbjct: 199 PVQNNNSNLENMMKEYMARTDAVIQSQAASMRNFETQLGQLANELKNRPQGSFPXHTELP 258

Query: 211 HREGKEQCKAVTLRSGLEYD 224
            REGKEQCKAVTLRSGL YD
Sbjct: 259 KREGKEQCKAVTLRSGLAYD 278

BLAST of Spg024383 vs. NCBI nr
Match: XP_030505222.1 (uncharacterized protein LOC115720205 [Cannabis sativa])

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-17
Identity = 72/209 (34.45%), Postives = 98/209 (46.89%), Query Frame = 0

Query: 69  EQNATNNRHWGETEPTTILKNPVKAMETEANSTMQAHIKAIHIMMMCMTMNNQANIALAN 128
           E+ A+NN  W      T  K     +E +A + + A + ++  ++  M M      A A 
Sbjct: 72  ERIASNNYQWSTNRAPTSRK-VAGVLEVDALTALTAQMASMTNILKNMNMGGSVQPAAAI 131

Query: 129 AISSPCCEICGDEHIADNCPLNPT------------------------------------ 188
             +   C  CGD H  +NCP NP                                     
Sbjct: 132 QRAEISCVYCGDGHTFENCPSNPNFLLLCGASSSGAQQAQGKQSFPPGFSQQPRPQQPHQ 191

Query: 189 --SSQESNLETLMKEYMARNDAAVR-------NLEVQLGQIAQEIKNRPQGTLPRKTEIP 233
              SQ S+LE+LM++YMA+NDA ++       NLEVQLGQ+A ++KNRPQGTLP  TE P
Sbjct: 192 PQGSQTSSLESLMRDYMAKNDAVIQSQAKISSNLEVQLGQLANDLKNRPQGTLPSDTENP 251

BLAST of Spg024383 vs. NCBI nr
Match: XP_022158408.1 (uncharacterized protein LOC111024897, partial [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 4.5e-17
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 151 PTSSQESNLETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIP 210
           P  +  SNLE +MKEYMAR DA +       RN   QLG +A E+KNRPQG+ P  TE+P
Sbjct: 426 PIQNNNSNLENMMKEYMARTDAVIQSQAASMRNFGTQLGHLANELKNRPQGSFPGHTELP 485

Query: 211 HREGKEQCKAVTLRSGLEYDG 225
            REGKEQCKAVTLRSGL YDG
Sbjct: 486 RREGKEQCKAVTLRSGLTYDG 506

BLAST of Spg024383 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-17
Identity = 72/216 (33.33%), Postives = 96/216 (44.44%), Query Frame = 0

Query: 69  EQNATNNRHWGETEPTTILKNPVKAMETEANSTMQAHIKAIHIMMMCMTMNNQANIALAN 128
           E+ A+NN  W      T  K     +E +A + + A + ++  ++  M M      A A 
Sbjct: 224 ERIASNNYQWSTNRAHTSRK-VAGVLEVDALTALTAQMASMTNILKNMNMGGSVQPAAAI 283

Query: 129 AISSPCCEICGDEHIADNCPLN-------------------------------------- 188
             +   C  CGD H  +NCP N                                      
Sbjct: 284 QRAKNSCVYCGDGHTFENCPSNLASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQ 343

Query: 189 --------------------PTSSQESNLETLMKEYMARND-------AAVRNLEVQLGQ 220
                               P  SQ S+LE+LM++YMA+ND       A++RNLEVQLGQ
Sbjct: 344 GKQSFPPGFSQQPRPQQPHQPQGSQTSSLESLMRDYMAKNDTVIQSQAASLRNLEVQLGQ 403

BLAST of Spg024383 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.4e-18
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 151 PTSSQESNLETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIP 210
           P  +  SNLE +MKEYMAR DA +       RN E QLGQ+A E+KNRPQG+ P  TE+P
Sbjct: 199 PVQNNNSNLENMMKEYMARTDAVIQSQAASMRNFETQLGQLANELKNRPQGSFPXHTELP 258

Query: 211 HREGKEQCKAVTLRSGLEYD 224
            REGKEQCKAVTLRSGL YD
Sbjct: 259 KREGKEQCKAVTLRSGLAYD 278

BLAST of Spg024383 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-17
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 151 PTSSQESNLETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIP 210
           P  +  SNLE +MKEYMAR DA +       RN   QLG +A E+KNRPQG+ P  TE+P
Sbjct: 426 PIQNNNSNLENMMKEYMARTDAVIQSQAASMRNFGTQLGHLANELKNRPQGSFPGHTELP 485

Query: 211 HREGKEQCKAVTLRSGLEYDG 225
            REGKEQCKAVTLRSGL YDG
Sbjct: 486 RREGKEQCKAVTLRSGLTYDG 506

BLAST of Spg024383 vs. ExPASy TrEMBL
Match: A0A6J1DAE9 (uncharacterized protein LOC111018514 OS=Momordica charantia OX=3673 GN=LOC111018514 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-14
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 148 PLNPTSSQESNLETLMKEYMARND--------------AAVRNLEVQLGQIAQEIKNRPQ 207
           P  P  +  ++LE + KEYMARND              A +RNLEVQ+GQ A ++K RPQ
Sbjct: 230 PSQPAHNNNTSLENMFKEYMARNDALMQSQNATIQTQAAXMRNLEVQMGQXANDLKARPQ 289

Query: 208 GTLPRKTEIPHREGKEQCKAVTLRSGLEYDGKK 227
           G+ P  TE+  R+G EQCKAVTLRSGL Y+G K
Sbjct: 290 GSFPGHTEVXKRDGXEQCKAVTLRSGLSYEGPK 322

BLAST of Spg024383 vs. ExPASy TrEMBL
Match: A0A6J1DTD1 (uncharacterized protein LOC111024136 OS=Momordica charantia OX=3673 GN=LOC111024136 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-14
Identity = 65/188 (34.57%), Postives = 98/188 (52.13%), Query Frame = 0

Query: 69  EQNATNNRHWGETEPTTILKNPVKAM-ETEANSTMQAHIKAI-HIMMMCMTMNNQANIAL 128
           E+ ++NN  W   +P  +     KA+ E+E+ +T+ + I+ +  ++M  +T  + A  ++
Sbjct: 116 ERISSNNHSW--FDPKAVQGKSSKALVESESYTTLNSKIENLTDLVMRSITQQSPAGASV 175

Query: 129 ----ANAISSPCCEICGDEHIADNCPLNPTSSQE------------------------SN 188
                N I    C     +H  +NCP NP SS                          ++
Sbjct: 176 GMXNVNQIQGISCSFYEGDHHYNNCPGNPESSGNQGGHNAGTSNAPAFQQKRQSEGSFAS 235

Query: 189 LETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIPHREGKEQC 220
           LE LMK+YMA NDA V       RNLE+Q+GQ+A ++ +RP G LP  TE+P R+GKEQC
Sbjct: 236 LEKLMKQYMANNDATVERQVSPLRNLELQVGQLATDLNSRPIGALPSDTEVPKRDGKEQC 295

BLAST of Spg024383 vs. ExPASy TrEMBL
Match: A0A6J1E110 (uncharacterized protein LOC111025424 OS=Momordica charantia OX=3673 GN=LOC111025424 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.0e-14
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 151 PTSSQESNLETLMKEYMARNDAAV-------RNLEVQLGQIAQEIKNRPQGTLPRKTEIP 210
           P  +  SNLE  MKEYMAR DA +       RN E QLG +A  +KNRPQG+    TE+P
Sbjct: 109 PVQNNNSNLENXMKEYMARTDAVIQSQAASMRNFETQLGXLANXLKNRPQGSFXGHTELP 168

Query: 211 HREGKEQCKAVTLRSGLEYD 224
             EGKE CKAVTLRSGL YD
Sbjct: 169 KXEGKEXCKAVTLRSGLXYD 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030494802.15.3e-1835.00uncharacterized protein LOC115710583 [Cannabis sativa][more]
XP_022159345.17.0e-1863.75uncharacterized protein LOC111025764 [Momordica charantia][more]
XP_030505222.13.5e-1734.45uncharacterized protein LOC115720205 [Cannabis sativa][more]
XP_022158408.14.5e-1761.73uncharacterized protein LOC111024897, partial [Momordica charantia][more]
XP_030497803.17.7e-1733.33uncharacterized protein LOC115713460 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DYG03.4e-1863.75uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DW022.2e-1761.73uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DAE92.3e-1450.54uncharacterized protein LOC111018514 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DTD12.3e-1434.57uncharacterized protein LOC111024136 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1E1105.0e-1457.50uncharacterized protein LOC111025424 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024383.1Spg024383.1mRNA