Spg019867.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg019867.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	mitochondrial import inner membrane translocase subunit TIM44-2-like
Location	scaffold5: 30037636 .. 30039728 (+)
Sequence length	210
RNA-Seq Expression	Spg019867.1
Synteny	Spg019867.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCGTTTGGCCCAGAAGGCCCATGCTTTAAAATCTTCTGTTAATTGGAGTGGAAATTTCCCTCTTTGGTTTTTGATTTTGAACTCTGAAGACATTGGGGTTGTTGATGGCCGTGATGGGGGATACTGTCCCATTATGGCTTGTCGTTTGGGAGCTTCTGCTCTCGGCTAGCTTGTTTTGCTTGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTAAGAAAAACAAAACTGAGCCCATGTAAAATAAAATAAAAATCAATAAAAGAAAGAGAGGAAAACCTAACTCTTTCATATGTGCTCCACGCCTACTTCTTCACGCCGTCTCCTACCTCCGTTTCAGCTCCTCAATCACCGCCGCCTCTCTCCCGTTCATTGCTGTTGTCTTTCTTCTGTTCATGCCGCCGCAGCCTCCCTCCTAGAGCTTTTGCACTGATTTTCTACTCCCTTGTTGTACTGGTATTCTTCCAATCTCCATCTCTGTCTTTCTACCGATGATACTTTGAATTTATGGAAACAAGATCATGAATCCAGACATATTTTTGATTGGAATACGAATCAATCACTCTGGGAAGTTCAAACCTGATTAAAAACATGAGTCGACACATATTTTTCAATTATTCGTTAGGAGTAATGGTTCCGTTAAATGGTAATGAACCGTTCTATGAATGTGGATTATTTTTCTTCCTTAATGTAAAATTCAGCTACCTAATTTCAGAAATTAAGACAAAAGGGTACATAATTTACAAGACTTCTTCGTTCTCTGTCCTGTCCCTCCATTTTTTTGCCTTCTGTATTCGATTACCCTTGATACCAATTCTTTTCTCTCAATTTTCTTTTGTTTCCGGCTGGGCTATCTTGAGTTGCTCTCTTAATTGTATTGGGGATTCTTAAAGTTTGTAAATGGCAAAAGTTTCTCAGGGGAACCCGTCCTATTATCTTACTCCTGTCCCGTTGACACTCCAATAATAAACCCAGCAACTTAGCCAATGGCAATTTTGAAATTATTTTGAAACTTCTGTTTTACCCTCAAAAGGAGGGAAGGGAAAAACTTAATTACTTCTCATCTCTCCTCTCGGCCGCCTCTGTTTACCGTGTCTCACGCCCTAGCTCTCTCTCTCCTTCTTCCAACCGCCCTTTTCATCTGCTTTCTTTTTCGGTCACCATCTGAACCTTAGTTATTTCTGCACTGATTTTCCCTTCGGTTTTGTGAGTCTCCTTCGTCAAGTAAGAAAGTTGTGTTTTATTGATTTTTTGATAAGAGGACTAAGAAGAGAGGGAGGGATAACTATAAAAAAGATATTGCTCAAGGGACTTGCTAAGGTAGAGTTTGGCTTCCAAATCCAAAATCTCTTATTATTATTATTTTTTATTTTATTCTTCTTTTTGTCGGTTACTAACAATAGCATTAGAATTTGGAGGTTAGCAGTAGCTTTGCCTTACCCATAATTTTTTTTAACAAGAACCAAAACTTTTCATTTGCCTTACCATTATTTAAATTGTAAATTTGTAATACCATTAGTTTCTTTTAACGTTACAAAATTTCCTCAAAACTTGAATCATGCTCCAAGAAAGGGGAGAAGGGAGATTGGTTTGCTGCTTTTATTTTCTTACTTCATTGAAGAAATATAAATCCACTTTGAATTTTATATCCATATGATACCAATTAGATTGTGCTAATTATTGTTTTCTAAGAAAAAGTTAATGTGTAGAGTTGCAGTGACTAAATCACGATGGCTGGCAGAAAATTGGTTCGGGATTTGTTTCTCTCAAGACAAAGCATTTTTTATCAGCTTACTTCCCATGAGGTTCTTTTCTTCCCTATGCTTTAACCTAAACCCATATTTCTCCACGGCAGTCTTCATAGGATGGATTTCTGTGGTGTAAAGTTATTCAATATCGTGTTTGTTTTAATTTATGGGTTGGGTATTGTTGCTGTAGAGCTCCTGTACGAGATCACAATTGCTCTTACCAAATGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGTATCTTCCCTTTCCTTTAGAATTCTAA

mRNA sequence

ATGGCTGGCAGAAAATTGGTTCGGGATTTGTTTCTCTCAAGACAAAGCATTTTTTATCAGCTTACTTCCCATGAGAGCTCCTGTACGAGATCACAATTGCTCTTACCAAATGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGTATCTTCCCTTTCCTTTAGAATTCTAA

Coding sequence (CDS)

ATGGCTGGCAGAAAATTGGTTCGGGATTTGTTTCTCTCAAGACAAAGCATTTTTTATCAGCTTACTTCCCATGAGAGCTCCTGTACGAGATCACAATTGCTCTTACCAAATGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGTATCTTCCCTTTCCTTTAGAATTCTAA

Protein sequence

MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEANKYLPFPLEF

Homology

[Close]

BLAST of Spg019867.1 vs. NCBI nr
Match: XP_022155931.1 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. NCBI nr
Match: XP_022155929.1 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. NCBI nr
Match: XP_022994020.1 (mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. NCBI nr
Match: XP_023550271.1 (mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. NCBI nr
Match: XP_022939357.1 (mitochondrial import inner membrane translocase subunit TIM44-2 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 6.1e-23
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAG+KLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGKKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. ExPASy Swiss-Prot
Match: Q5XF06 (Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana OX=3702 GN=TIM44-2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MA RKLVRDL +++Q +  QL        R  LL  NG++ +RRFSVF+EFSKK++GEA+
Sbjct: 1  MASRKLVRDLLITKQPLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEAD 60

[Close]

BLAST of Spg019867.1 vs. ExPASy Swiss-Prot
Match: Q1PF33 (Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana OX=3702 GN=TIM44-1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHE--SSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGE 60
          MA RK++RDL +++Q +  QL       +  RS+ L   GY+ +RRFSVF EFSK ++GE
Sbjct: 1  MAIRKIIRDLLITKQPLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRGE 60

[Close]

BLAST of Spg019867.1 vs. ExPASy TrEMBL
Match: A0A6J1DRS2 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022929 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-24
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. ExPASy TrEMBL
Match: A0A6J1DT74 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022929 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-24
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. ExPASy TrEMBL
Match: A0A6J1K042 (mitochondrial import inner membrane translocase subunit TIM44-2-like OS=Cucurbita maxima OX=3661 GN=LOC111489836 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. ExPASy TrEMBL
Match: A0A6J1FGJ9 (mitochondrial import inner membrane translocase subunit TIM44-2 OS=Cucurbita moschata OX=3662 GN=LOC111445295 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAG+KLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGKKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Spg019867.1 vs. ExPASy TrEMBL
Match: A0A1S3CU85 (mitochondrial import inner membrane translocase subunit TIM44-2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504598 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRD+ LSRQ+IFYQ TSH SSCTRSQ LLP+GYSINR+FSVFNEFSKK+KGEA+
Sbjct: 1  MAGRKLVRDILLSRQTIFYQFTSHGSSCTRSQFLLPSGYSINRKFSVFNEFSKKVKGEAD 60

Query: 61 KYLPF 66
          K   F
Sbjct: 61 KNTEF 65

[Close]

BLAST of Spg019867.1 vs. TAIR 10
Match: AT2G36070.1 (translocase inner membrane subunit 44-2 )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MA RKLVRDL +++Q +  QL        R  LL  NG++ +RRFSVF+EFSKK++GEA+
Sbjct: 1  MASRKLVRDLLITKQPLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEAD 60

[Close]

BLAST of Spg019867.1 vs. TAIR 10
Match: AT2G20510.1 (translocase inner membrane subunit 44-1 )

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-09
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MA RK++RDL +++Q +  QL     +  RS+ L   GY+ +RRFSVF EFSK ++GEA+
Sbjct: 1  MAIRKIIRDLLITKQPLLRQLFHQRRANARSEFLPAIGYTSHRRFSVFTEFSKNIRGEAH 60

The following BLAST results are available for this feature:

BLAST of Spg019867.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155931.1	1.2e-23	96.72	mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 [Momo...	[more]
XP_022155929.1	1.2e-23	96.72	mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 [Momo...	[more]
XP_022994020.1	2.7e-23	95.08	mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita ...	[more]
XP_023550271.1	2.7e-23	95.08	mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita ...	[more]
XP_022939357.1	6.1e-23	93.44	mitochondrial import inner membrane translocase subunit TIM44-2 [Cucurbita mosch...	[more]

BLAST of Spg019867.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XF06	2.3e-09	51.67	Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis t...	[more]
Q1PF33	1.8e-06	45.16	Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis t...	[more]

BLAST of Spg019867.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRS2	5.9e-24	96.72	mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 OS=Mo...	[more]
A0A6J1DT74	5.9e-24	96.72	mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 OS=Mo...	[more]
A0A6J1K042	1.3e-23	95.08	mitochondrial import inner membrane translocase subunit TIM44-2-like OS=Cucurbit...	[more]
A0A6J1FGJ9	2.9e-23	93.44	mitochondrial import inner membrane translocase subunit TIM44-2 OS=Cucurbita mos...	[more]
A0A1S3CU85	1.8e-20	80.00	mitochondrial import inner membrane translocase subunit TIM44-2-like isoform X1 ...	[more]

BLAST of Spg019867.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36070.1	1.7e-10	51.67	translocase inner membrane subunit 44-2	[more]
AT2G20510.1	4.1e-09	46.67	translocase inner membrane subunit 44-1	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg019867	Spg019867	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg019867.1-five_prime_utr	Spg019867.1-five_prime_utr-scaffold5:30037636..30038111	five_prime_UTR
Spg019867.1-five_prime_utr	Spg019867.1-five_prime_utr-scaffold5:30039365..30039385	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg019867.1-cds	Spg019867.1-cds-scaffold5:30039386..30039460	CDS
Spg019867.1-cds	Spg019867.1-cds-scaffold5:30039594..30039728	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg019867.1	Spg019867.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005840	ribosome