Spg019867 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg019867
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmitochondrial import inner membrane translocase subunit TIM44-2-like
Locationscaffold5: 30037636 .. 30039728 (+)
RNA-Seq ExpressionSpg019867
SyntenySpg019867
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATCGTTTGGCCCAGAAGGCCCATGCTTTAAAATCTTCTGTTAATTGGAGTGGAAATTTCCCTCTTTGGTTTTTGATTTTGAACTCTGAAGACATTGGGGTTGTTGATGGCCGTGATGGGGGATACTGTCCCATTATGGCTTGTCGTTTGGGAGCTTCTGCTCTCGGCTAGCTTGTTTTGCTTGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTAAGAAAAACAAAACTGAGCCCATGTAAAATAAAATAAAAATCAATAAAAGAAAGAGAGGAAAACCTAACTCTTTCATATGTGCTCCACGCCTACTTCTTCACGCCGTCTCCTACCTCCGTTTCAGCTCCTCAATCACCGCCGCCTCTCTCCCGTTCATTGCTGTTGTCTTTCTTCTGTTCATGCCGCCGCAGCCTCCCTCCTAGAGCTTTTGCACTGATTTTCTACTCCCTTGTTGTACTGGTATTCTTCCAATCTCCATCTCTGTCTTTCTACCGATGATACTTTGAATTTATGGAAACAAGATCATGAATCCAGACATATTTTTGATTGGAATACGAATCAATCACTCTGGGAAGTTCAAACCTGATTAAAAACATGAGTCGACACATATTTTTCAATTATTCGTTAGGAGTAATGGTTCCGTTAAATGGTAATGAACCGTTCTATGAATGTGGATTATTTTTCTTCCTTAATGTAAAATTCAGCTACCTAATTTCAGAAATTAAGACAAAAGGGTACATAATTTACAAGACTTCTTCGTTCTCTGTCCTGTCCCTCCATTTTTTTGCCTTCTGTATTCGATTACCCTTGATACCAATTCTTTTCTCTCAATTTTCTTTTGTTTCCGGCTGGGCTATCTTGAGTTGCTCTCTTAATTGTATTGGGGATTCTTAAAGTTTGTAAATGGCAAAAGTTTCTCAGGGGAACCCGTCCTATTATCTTACTCCTGTCCCGTTGACACTCCAATAATAAACCCAGCAACTTAGCCAATGGCAATTTTGAAATTATTTTGAAACTTCTGTTTTACCCTCAAAAGGAGGGAAGGGAAAAACTTAATTACTTCTCATCTCTCCTCTCGGCCGCCTCTGTTTACCGTGTCTCACGCCCTAGCTCTCTCTCTCCTTCTTCCAACCGCCCTTTTCATCTGCTTTCTTTTTCGGTCACCATCTGAACCTTAGTTATTTCTGCACTGATTTTCCCTTCGGTTTTGTGAGTCTCCTTCGTCAAGTAAGAAAGTTGTGTTTTATTGATTTTTTGATAAGAGGACTAAGAAGAGAGGGAGGGATAACTATAAAAAAGATATTGCTCAAGGGACTTGCTAAGGTAGAGTTTGGCTTCCAAATCCAAAATCTCTTATTATTATTATTTTTTATTTTATTCTTCTTTTTGTCGGTTACTAACAATAGCATTAGAATTTGGAGGTTAGCAGTAGCTTTGCCTTACCCATAATTTTTTTTAACAAGAACCAAAACTTTTCATTTGCCTTACCATTATTTAAATTGTAAATTTGTAATACCATTAGTTTCTTTTAACGTTACAAAATTTCCTCAAAACTTGAATCATGCTCCAAGAAAGGGGAGAAGGGAGATTGGTTTGCTGCTTTTATTTTCTTACTTCATTGAAGAAATATAAATCCACTTTGAATTTTATATCCATATGATACCAATTAGATTGTGCTAATTATTGTTTTCTAAGAAAAAGTTAATGTGTAGAGTTGCAGTGACTAAATCACGATGGCTGGCAGAAAATTGGTTCGGGATTTGTTTCTCTCAAGACAAAGCATTTTTTATCAGCTTACTTCCCATGAGGTTCTTTTCTTCCCTATGCTTTAACCTAAACCCATATTTCTCCACGGCAGTCTTCATAGGATGGATTTCTGTGGTGTAAAGTTATTCAATATCGTGTTTGTTTTAATTTATGGGTTGGGTATTGTTGCTGTAGAGCTCCTGTACGAGATCACAATTGCTCTTACCAAATGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGTATCTTCCCTTTCCTTTAGAATTCTAA

mRNA sequence

ATGGCTGGCAGAAAATTGGTTCGGGATTTGTTTCTCTCAAGACAAAGCATTTTTTATCAGCTTACTTCCCATGAGAGCTCCTGTACGAGATCACAATTGCTCTTACCAAATGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGTATCTTCCCTTTCCTTTAGAATTCTAA

Coding sequence (CDS)

ATGGCTGGCAGAAAATTGGTTCGGGATTTGTTTCTCTCAAGACAAAGCATTTTTTATCAGCTTACTTCCCATGAGAGCTCCTGTACGAGATCACAATTGCTCTTACCAAATGGTTACTCCATCAATCGTAGATTCAGTGTATTCAATGAGTTCTCGAAGAAACTGAAAGGAGAAGCTAACAAGTATCTTCCCTTTCCTTTAGAATTCTAA

Protein sequence

MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEANKYLPFPLEF
Homology
[Close]
BLAST of Spg019867 vs. NCBI nr
Match: XP_022155931.1 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. NCBI nr
Match: XP_022155929.1 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. NCBI nr
Match: XP_022994020.1 (mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. NCBI nr
Match: XP_023550271.1 (mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. NCBI nr
Match: XP_022939357.1 (mitochondrial import inner membrane translocase subunit TIM44-2 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 6.1e-23
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAG+KLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGKKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. ExPASy Swiss-Prot
Match: Q5XF06 (Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana OX=3702 GN=TIM44-2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MA RKLVRDL +++Q +  QL        R  LL  NG++ +RRFSVF+EFSKK++GEA+
Sbjct: 1  MASRKLVRDLLITKQPLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEAD 60

[Close]
BLAST of Spg019867 vs. ExPASy Swiss-Prot
Match: Q1PF33 (Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana OX=3702 GN=TIM44-1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHE--SSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGE 60
          MA RK++RDL +++Q +  QL       +  RS+ L   GY+ +RRFSVF EFSK ++GE
Sbjct: 1  MAIRKIIRDLLITKQPLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRGE 60

[Close]
BLAST of Spg019867 vs. ExPASy TrEMBL
Match: A0A6J1DRS2 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022929 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-24
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. ExPASy TrEMBL
Match: A0A6J1DT74 (mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022929 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-24
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQSIFYQLTSH SSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSIFYQLTSHGSSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. ExPASy TrEMBL
Match: A0A6J1K042 (mitochondrial import inner membrane translocase subunit TIM44-2-like OS=Cucurbita maxima OX=3661 GN=LOC111489836 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGRKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. ExPASy TrEMBL
Match: A0A6J1FGJ9 (mitochondrial import inner membrane translocase subunit TIM44-2 OS=Cucurbita moschata OX=3662 GN=LOC111445295 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAG+KLVRDLFLSRQS+FYQLTS ESSCTRSQLLLPNGYSINRRFSVFNEFSKK+KGEAN
Sbjct: 1  MAGKKLVRDLFLSRQSLFYQLTSQESSCTRSQLLLPNGYSINRRFSVFNEFSKKVKGEAN 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]
BLAST of Spg019867 vs. ExPASy TrEMBL
Match: A0A1S3CU85 (mitochondrial import inner membrane translocase subunit TIM44-2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504598 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MAGRKLVRD+ LSRQ+IFYQ TSH SSCTRSQ LLP+GYSINR+FSVFNEFSKK+KGEA+
Sbjct: 1  MAGRKLVRDILLSRQTIFYQFTSHGSSCTRSQFLLPSGYSINRKFSVFNEFSKKVKGEAD 60

Query: 61 KYLPF 66
          K   F
Sbjct: 61 KNTEF 65

[Close]
BLAST of Spg019867 vs. TAIR 10
Match: AT2G36070.1 (translocase inner membrane subunit 44-2 )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MA RKLVRDL +++Q +  QL        R  LL  NG++ +RRFSVF+EFSKK++GEA+
Sbjct: 1  MASRKLVRDLLITKQPLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEAD 60

[Close]
BLAST of Spg019867 vs. TAIR 10
Match: AT2G20510.1 (translocase inner membrane subunit 44-1 )

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-09
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 1  MAGRKLVRDLFLSRQSIFYQLTSHESSCTRSQLLLPNGYSINRRFSVFNEFSKKLKGEAN 60
          MA RK++RDL +++Q +  QL     +  RS+ L   GY+ +RRFSVF EFSK ++GEA+
Sbjct: 1  MAIRKIIRDLLITKQPLLRQLFHQRRANARSEFLPAIGYTSHRRFSVFTEFSKNIRGEAH 60

The following BLAST results are available for this feature:
BLAST of Spg019867 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155931.11.2e-2396.72mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 [Momo... [more]
XP_022155929.11.2e-2396.72mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 [Momo... [more]
XP_022994020.12.7e-2395.08mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita ... [more]
XP_023550271.12.7e-2395.08mitochondrial import inner membrane translocase subunit TIM44-2-like [Cucurbita ... [more]
XP_022939357.16.1e-2393.44mitochondrial import inner membrane translocase subunit TIM44-2 [Cucurbita mosch... [more]
BLAST of Spg019867 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5XF062.3e-0951.67Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis t... [more]
Q1PF331.8e-0645.16Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis t... [more]
BLAST of Spg019867 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DRS25.9e-2496.72mitochondrial import inner membrane translocase subunit TIM44-2 isoform X1 OS=Mo... [more]
A0A6J1DT745.9e-2496.72mitochondrial import inner membrane translocase subunit TIM44-2 isoform X2 OS=Mo... [more]
A0A6J1K0421.3e-2395.08mitochondrial import inner membrane translocase subunit TIM44-2-like OS=Cucurbit... [more]
A0A6J1FGJ92.9e-2393.44mitochondrial import inner membrane translocase subunit TIM44-2 OS=Cucurbita mos... [more]
A0A1S3CU851.8e-2080.00mitochondrial import inner membrane translocase subunit TIM44-2-like isoform X1 ... [more]
BLAST of Spg019867 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G36070.11.7e-1051.67translocase inner membrane subunit 44-2 [more]
AT2G20510.14.1e-0946.67translocase inner membrane subunit 44-1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg019867.1Spg019867.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005840 ribosome