Spg019704 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019704
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glial fibrillary acidic protein-like
Location	scaffold5: 36826301 .. 36827422 (-)
RNA-Seq Expression	Spg019704
Synteny	Spg019704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACCTTCAAGGCCTATAACATATCGATGTGGACAATTACCTTTCGTCCCATTGTTAGGGCCTTGGGGAGGTATCGCTTACACGCCATTACTAGCGCTACGTCAAGTATGGTTGAAGCAATTTGTCCCAACTATCCATGGTTTGGAAGACTGGGAAGTTTCGTATGATTCTGACACGACAAGTGCCCAGATTCATCAGGCAGTGGAGGCATGGAAAGTAGTGAGAAAGACGAAAAATGCACGGCACTACGAGGGCACACGGCGCCATATGAGAATTGGAGAGCAGCTCGAAATGGATTCGAGGTTGTCATTCCGCCAGAATCAATAGCTTCAAGTGATACTTTGAAGATGGATCAAGCTTACTCGGAGAGAAATTTAGAACGTTTAGAGGAAAGAAATCTTGTCCTGGTAAGAGAAAATGAAGGATTAAAAGACGAGGTCAAACGATGGATCGAGCATGCTACCGGTATTCAGAAGCAGCTAGACGAGGCCAAACGACAGTTGAAAGGACAAGAAAAAGATAAAAGCTCTTTGAGTGTCGAGGCGGTCCATATGAGAAAAAGAAATAAAAAGCTACAGAGGGAAATTGAACTCTTGCAAGGTGAGGCAGAAGCTCAAAAGGCTCACATTCGAGAGTTGAAGCGGGAAATAGAAAGACTCAACGACGTTATCGAAGGTTTCCAAGGTACAATGAATGAGCAAGCCACGATATCCCAGGAGGTCATTGCATCCTTATAAAAGGAAACAGAGGCATTGCAGAAACTGACAGAAGAATACAGGAGTCAACTAACAGAGGCAGAGCATAGAAATGGAGTTCTCCAGGAGGCCGTTGCAAACTTTGAGCATCAGTTAGAAATATTTCGAGATGCCAGTGAAGTGATAACAAACGAGCACGCGCAGTTGAATGAAGAGTACTGAGAGATGTCCAGAGACTTTGCAATATGGAGAGATGAGTATAGGATCCTAAGGCGTCATTATGATGACGTAAGAGGACAGATTCAACGAGGAGCTGAAAAGTTGAGATTGATGGCAAGGATGGCAGATCGGTTTGCCGAACGAGCCATGACTCTCCGACAACGTATCACACCCACACAGCCTGATGGTGAAGCAGATTCCTAG

mRNA sequence

ATGGTTACCTTCAAGGCCTATAACATATCGATGTGGACAATTACCTTTCGTCCCATTGTTAGGGCCTTGGGGAGGTATCGCTTACACGCCATTACTAGCGCTACGTCAAATTCATCAGGCAGTGGAGGCATGGAAAGTAGTGAGAAAGACGAAAAATGCACGGCACTACGAGGGCACACGGCGCCATATGAGAATTGGAGAGCAGCTCGAAATGGATTCGAGGTTGTCATTCCGCCAGAATCAATAGCTTCAAGTGATACTTTGAAGATGGATCAAGCTTACTCGGAGAGAAATTTAGAACGTTTAGAGGAAAGAAATCTTGTCCTGGTAAGAGAAAATGAAGGATTAAAAGACGAGGTCAAACGATGGATCGAGCATGCTACCGGTATTCAGAAGCAGCTAGACGAGGCCAAACGACAGTTGAAAGGACAAGAAAAAGATAAAAGCTCTTTGAGTGTCGAGGCGGTCCATATGAGAAAAAGAAATAAAAAGCTACAGAGGGAAATTGAACTCTTGCAAGGTGAGGCAGAAGCTCAAAAGGCTCACATTCGAGAGTTGAAGCGGGAAATAGAAAGACTCAACGACGTTATCGAAGGTTTCCAAGGTACAATGAATGAGCAAGCCACGATATCCCAGGAGATTCAACGAGGAGCTGAAAAGTTGAGATTGATGGCAAGGATGGCAGATCGGTTTGCCGAACGAGCCATGACTCTCCGACAACGTATCACACCCACACAGCCTGATGGTGAAGCAGATTCCTAG

Coding sequence (CDS)

ATGGTTACCTTCAAGGCCTATAACATATCGATGTGGACAATTACCTTTCGTCCCATTGTTAGGGCCTTGGGGAGGTATCGCTTACACGCCATTACTAGCGCTACGTCAAATTCATCAGGCAGTGGAGGCATGGAAAGTAGTGAGAAAGACGAAAAATGCACGGCACTACGAGGGCACACGGCGCCATATGAGAATTGGAGAGCAGCTCGAAATGGATTCGAGGTTGTCATTCCGCCAGAATCAATAGCTTCAAGTGATACTTTGAAGATGGATCAAGCTTACTCGGAGAGAAATTTAGAACGTTTAGAGGAAAGAAATCTTGTCCTGGTAAGAGAAAATGAAGGATTAAAAGACGAGGTCAAACGATGGATCGAGCATGCTACCGGTATTCAGAAGCAGCTAGACGAGGCCAAACGACAGTTGAAAGGACAAGAAAAAGATAAAAGCTCTTTGAGTGTCGAGGCGGTCCATATGAGAAAAAGAAATAAAAAGCTACAGAGGGAAATTGAACTCTTGCAAGGTGAGGCAGAAGCTCAAAAGGCTCACATTCGAGAGTTGAAGCGGGAAATAGAAAGACTCAACGACGTTATCGAAGGTTTCCAAGGTACAATGAATGAGCAAGCCACGATATCCCAGGAGATTCAACGAGGAGCTGAAAAGTTGAGATTGATGGCAAGGATGGCAGATCGGTTTGCCGAACGAGCCATGACTCTCCGACAACGTATCACACCCACACAGCCTGATGGTGAAGCAGATTCCTAG

Protein sequence

MVTFKAYNISMWTITFRPIVRALGRYRLHAITSATSNSSGSGGMESSEKDEKCTALRGHTAPYENWRAARNGFEVVIPPESIASSDTLKMDQAYSERNLERLEERNLVLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKLQREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLRLMARMADRFAERAMTLRQRITPTQPDGEADS

Homology

[Close]

BLAST of Spg019704 vs. NCBI nr
Match: KGN65327.1 (hypothetical protein Csa_019964 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-19
Identity = 62/122 (50.82%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 108 VLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQ---EKDKSSLSVEAVHMRKRNKK 167
           VL  ENEGL+ EVKRW++ AT  ++QL+EA+R L+ Q   EKD +SL++EA+ +RK+NK+
Sbjct: 4   VLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKNKR 63

Query: 168 LQREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLRLM 227
           L R+I  +  EAEAQK  IRELK+E+ER++ V+  FQ  ++EQAT SQ I    E L  +
Sbjct: 64  LLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTKMEALDNL 123

[Close]

BLAST of Spg019704 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-18
Identity = 74/198 (37.37%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 12  WTITFRPIVRALGRYRLHAITSATSNSSGSGGMESSEKDEKCTALR---GHTAPYENWRA 71
           W+  F P+V  L  +   +  S  +N+     +E+ +  +K  +LR   G T  Y+NWRA
Sbjct: 255 WSKQFAPVVCGLEDWEF-SYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRA 314

Query: 72  ARNGFEVVIPPESIASSDTLKMDQAYSERNLERLEERNLVLVRENEGLKDEVKRWIEHAT 131
           +RNG  +    ES+  +  LK      E+ L+RL E N V+  ENE L++EVK+W++ A 
Sbjct: 315 SRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVMATENEKLREEVKKWVQQAV 374

Query: 132 GIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKLQREIELLQGEAEAQKAHIRELKR 191
             Q+ LDEAKR+L   EK+  SL+ EA+ +RK+NK+L R I  L  E EA+K  I     
Sbjct: 375 NTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAI----- 434

Query: 192 EIERLNDVIEGFQGTMNE 207
           EIE L   I+ ++  + E
Sbjct: 435 EIEVLQHSIKEYKSQLIE 445

[Close]

BLAST of Spg019704 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-18
Identity = 74/198 (37.37%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 12  WTITFRPIVRALGRYRLHAITSATSNSSGSGGMESSEKDEKCTALR---GHTAPYENWRA 71
           W+  F P+V  L  +   +  S  +N+     +E+ +  +K  +LR   G T  Y+NWRA
Sbjct: 191 WSKQFAPVVCGLEDWEF-SYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRA 250

Query: 72  ARNGFEVVIPPESIASSDTLKMDQAYSERNLERLEERNLVLVRENEGLKDEVKRWIEHAT 131
           +RNG  +    ES+  +  LK      E+ L+RL E N V+  ENE L++EVK+W++ A 
Sbjct: 251 SRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVMATENEKLREEVKKWVQQAV 310

Query: 132 GIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKLQREIELLQGEAEAQKAHIRELKR 191
             Q+ LDEAKR+L   EK+  SL+ EA+ +RK+NK+L R I  L  E EA+K  I     
Sbjct: 311 NTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAI----- 370

Query: 192 EIERLNDVIEGFQGTMNE 207
           EIE L   I+ ++  + E
Sbjct: 371 EIEVLQHSIKEYKSQLIE 381

[Close]

BLAST of Spg019704 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-17
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 106 NLVLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKL 165
           N VL  ENE L++EVK+W++ A  IQ+ LDEAKR+    EK+  SL+ EA+ +RK+NK+L
Sbjct: 2   NCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKRL 61

Query: 166 QREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLR 223
            R I  L  E EA+K  I +LK EIE+LN +   FQ  ++EQA  SQ+   G E L+
Sbjct: 62  LRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMGIEVLQ 118

[Close]

BLAST of Spg019704 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-16
Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 106 NLVLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKL 165
           N VL  ENE L++EVK+W++ A   Q+ LDEAKR+    EK+  SL+ EA+ MRK+NK+L
Sbjct: 2   NCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKRL 61

Query: 166 QREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLR 223
            R I  L  E EA+K  I +LK EIE+LN +   FQ  ++EQA  SQ+   G E L+
Sbjct: 62  LRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMGIEVLQ 118

[Close]

BLAST of Spg019704 vs. ExPASy TrEMBL
Match: A0A0A0LWU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-20
Identity = 62/122 (50.82%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 108 VLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQ---EKDKSSLSVEAVHMRKRNKK 167
           VL  ENEGL+ EVKRW++ AT  ++QL+EA+R L+ Q   EKD +SL++EA+ +RK+NK+
Sbjct: 4   VLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKNKR 63

Query: 168 LQREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLRLM 227
           L R+I  +  EAEAQK  IRELK+E+ER++ V+  FQ  ++EQAT SQ I    E L  +
Sbjct: 64  LLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTKMEALDNL 123

[Close]

BLAST of Spg019704 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-19
Identity = 74/198 (37.37%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 12  WTITFRPIVRALGRYRLHAITSATSNSSGSGGMESSEKDEKCTALR---GHTAPYENWRA 71
           W+  F P+V  L  +   +  S  +N+     +E+ +  +K  +LR   G T  Y+NWRA
Sbjct: 191 WSKQFAPVVCGLEDWEF-SYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRA 250

Query: 72  ARNGFEVVIPPESIASSDTLKMDQAYSERNLERLEERNLVLVRENEGLKDEVKRWIEHAT 131
           +RNG  +    ES+  +  LK      E+ L+RL E N V+  ENE L++EVK+W++ A 
Sbjct: 251 SRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVMATENEKLREEVKKWVQQAV 310

Query: 132 GIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKLQREIELLQGEAEAQKAHIRELKR 191
             Q+ LDEAKR+L   EK+  SL+ EA+ +RK+NK+L R I  L  E EA+K  I     
Sbjct: 311 NTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAI----- 370

Query: 192 EIERLNDVIEGFQGTMNE 207
           EIE L   I+ ++  + E
Sbjct: 371 EIEVLQHSIKEYKSQLIE 381

[Close]

BLAST of Spg019704 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-19
Identity = 74/198 (37.37%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 12  WTITFRPIVRALGRYRLHAITSATSNSSGSGGMESSEKDEKCTALR---GHTAPYENWRA 71
           W+  F P+V  L  +   +  S  +N+     +E+ +  +K  +LR   G T  Y+NWRA
Sbjct: 255 WSKQFAPVVCGLEDWEF-SYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDNWRA 314

Query: 72  ARNGFEVVIPPESIASSDTLKMDQAYSERNLERLEERNLVLVRENEGLKDEVKRWIEHAT 131
           +RNG  +    ES+  +  LK      E+ L+RL E N V+  ENE L++EVK+W++ A 
Sbjct: 315 SRNGITINAMSESLVPNIELKKYHD-KEKELKRLREMNCVMATENEKLREEVKKWVQQAV 374

Query: 132 GIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKLQREIELLQGEAEAQKAHIRELKR 191
             Q+ LDEAKR+L   EK+  SL+ EA+ +RK+NK+L R I  L  E EA+K  I     
Sbjct: 375 NTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAI----- 434

Query: 192 EIERLNDVIEGFQGTMNE 207
           EIE L   I+ ++  + E
Sbjct: 435 EIEVLQHSIKEYKSQLIE 445

[Close]

BLAST of Spg019704 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 106 NLVLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKL 165
           N VL  ENE L++EVK+W++ A  IQ+ LDEAKR+    EK+  SL+ EA+ +RK+NK+L
Sbjct: 2   NCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKRL 61

Query: 166 QREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLR 223
            R I  L  E EA+K  I +LK EIE+LN +   FQ  ++EQA  SQ+   G E L+
Sbjct: 62  LRNIANLHEEIEAEKVCITDLKHEIEKLNGITLEFQNALHEQAISSQQTAMGIEVLQ 118

[Close]

BLAST of Spg019704 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-17
Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 106 NLVLVRENEGLKDEVKRWIEHATGIQKQLDEAKRQLKGQEKDKSSLSVEAVHMRKRNKKL 165
           N VL  ENE L++EVK+W++ A   Q+ LDEAKR+    EK+  SL+ EA+ MRK+NK+L
Sbjct: 2   NCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKRL 61

Query: 166 QREIELLQGEAEAQKAHIRELKREIERLNDVIEGFQGTMNEQATISQEIQRGAEKLR 223
            R I  L  E EA+K  I +LK EIE+LN +   FQ  ++EQA  SQ+   G E L+
Sbjct: 62  LRNIANLHEEIEAKKVCITDLKHEIEKLNGIALEFQNALHEQAISSQQTAMGIEVLQ 118

The following BLAST results are available for this feature:

BLAST of Spg019704 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65327.1	1.0e-19	50.82	hypothetical protein Csa_019964 [Cucumis sativus]	[more]
TYK16834.1	2.0e-18	37.37	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0032013.1	2.0e-18	37.37	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0025321.1	6.3e-17	47.86	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0065294.1	1.1e-16	47.86	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of Spg019704 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg019704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU7	5.0e-20	50.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1	[more]
A0A5A7SNY0	9.5e-19	37.37	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D0S2	9.5e-19	37.37	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SM49	3.0e-17	47.86	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VDD9	5.2e-17	47.86	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Spg019704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..203
None	No IPR available	GENE3D	1.10.287.1490		coord: 82..245 e-value: 2.2E-5 score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019704.1	Spg019704.1	mRNA