Spg018576 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018576
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpartner of Y14 and mago-like
Locationscaffold3: 19723734 .. 19724304 (+)
RNA-Seq ExpressionSpg018576
SyntenySpg018576
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAACATCTTTTAATGAATTATTGGTGTCATTATGGACAGCTGAAGATTTGAGTTTTTGCTTAATATTTGTAAGTTTTTGTTTTATTTGTCTCTGAGGATTACAGCATGTTTAATCATTTTCGTTGCCTTGTTCTCTTGTTTTGGTTTGCAGATTCGAATTGCAGAAGCTCAGTTGCAGAAAACACCACTGCATGATATGAAGCCAGAGCAGTTGAACAAGTTATCAAAACTCGAAGATTGGCGCTCTGAACTAATGCTTCTCGAAGAACAAAGGCTAAAACAGAACACGTCGTCATGAATGAATGAATGCAAGGCAGCATTATTGTTCACTTTATTTATGCTTTCTGATAAAGAAAGAGACCAGGAATTTTGCTACAACAAAAGCATTTCGATTTGTACTTTGAAGATCTAATCACCTGTAAAACTCCACTTCTTTTAATGTGTTGTGTAATTGCATTTCAACTAGTTTTAGGAACCGCTTGAACTGTAGATAGTGTTAAAAACATTGATTTTTTTTTTTTTTGACAAAATGTTAAAAACATTGATTTTCTTTCGCCTGAACGTGAT

mRNA sequence

ATGCGAACATCTTTTAATGAATTATTGGTGTCATTATGGACAGCTGAAGATTTGAGTTTTTGCTTAATATTTATTCGAATTGCAGAAGCTCAGTTGCAGAAAACACCACTGCATGATATGAAGCCAGAGCAGTTGAACAAGTTATCAAAACTCGAAGATTGGCGCTCTGAACTAATGCTTCTCGAAGAACAAAGGCTAAAACAGAACACGTCGTCATGA

Coding sequence (CDS)

ATGCGAACATCTTTTAATGAATTATTGGTGTCATTATGGACAGCTGAAGATTTGAGTTTTTGCTTAATATTTATTCGAATTGCAGAAGCTCAGTTGCAGAAAACACCACTGCATGATATGAAGCCAGAGCAGTTGAACAAGTTATCAAAACTCGAAGATTGGCGCTCTGAACTAATGCTTCTCGAAGAACAAAGGCTAAAACAGAACACGTCGTCATGA

Protein sequence

MRTSFNELLVSLWTAEDLSFCLIFIRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS
Homology
[Close]
BLAST of Spg018576 vs. NCBI nr
Match: XP_023554038.1 (partner of Y14 and mago-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 183 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKPNSFS 230

[Close]
BLAST of Spg018576 vs. NCBI nr
Match: XP_022159168.1 (partner of Y14 and mago isoform X1 [Momordica charantia] >XP_022159169.1 partner of Y14 and mago isoform X1 [Momordica charantia] >XP_022159170.1 partner of Y14 and mago isoform X1 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 182 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 228

[Close]
BLAST of Spg018576 vs. NCBI nr
Match: XP_023554039.1 (partner of Y14 and mago-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 167 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKPNSFS 214

[Close]
BLAST of Spg018576 vs. NCBI nr
Match: XP_022159171.1 (partner of Y14 and mago isoform X2 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 143 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 189

[Close]
BLAST of Spg018576 vs. NCBI nr
Match: XP_022971939.1 (partner of Y14 and mago-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 183 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS 230

[Close]
BLAST of Spg018576 vs. ExPASy Swiss-Prot
Match: Q9LPZ4 (Partner of Y14 and mago OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

[Close]
BLAST of Spg018576 vs. ExPASy TrEMBL
Match: A0A6J1DY25 (partner of Y14 and mago isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025593 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 182 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 228

[Close]
BLAST of Spg018576 vs. ExPASy TrEMBL
Match: A0A6J1E341 (partner of Y14 and mago isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025593 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 143 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 189

[Close]
BLAST of Spg018576 vs. ExPASy TrEMBL
Match: A0A6J1IA06 (partner of Y14 and mago-like OS=Cucurbita maxima OX=3661 GN=LOC111470610 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 183 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS 230

[Close]
BLAST of Spg018576 vs. ExPASy TrEMBL
Match: A0A1S3C0A7 (partner of Y14 and mago isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495372 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IR+AEAQLQKTPL DMKPEQ NKLSKLE WRSELMLLEEQRLK N+SS
Sbjct: 184 IRMAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRLKLNSSS 231

[Close]
BLAST of Spg018576 vs. ExPASy TrEMBL
Match: A0A5A7SL23 (Partner of Y14 and mago isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001860 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IR+AEAQLQKTPL DMKPEQ NKLSKLE WRSELMLLEEQRLK N+SS
Sbjct: 184 IRMAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRLKLNSSS 231

[Close]
BLAST of Spg018576 vs. TAIR 10
Match: AT1G11400.1 (partner of Y14-MAGO )

HSP 1 Score: 50.1 bits (118), Expect = 8.9e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

[Close]
BLAST of Spg018576 vs. TAIR 10
Match: AT1G11400.2 (partner of Y14-MAGO )

HSP 1 Score: 50.1 bits (118), Expect = 8.9e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

[Close]
BLAST of Spg018576 vs. TAIR 10
Match: AT1G11400.3 (partner of Y14-MAGO )

HSP 1 Score: 50.1 bits (118), Expect = 8.9e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

The following BLAST results are available for this feature:
BLAST of Spg018576 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023554038.12.3e-1287.50partner of Y14 and mago-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022159168.12.3e-1289.36partner of Y14 and mago isoform X1 [Momordica charantia] >XP_022159169.1 partner... [more]
XP_023554039.12.3e-1287.50partner of Y14 and mago-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022159171.12.3e-1289.36partner of Y14 and mago isoform X2 [Momordica charantia][more]
XP_022971939.13.0e-1287.50partner of Y14 and mago-like [Cucurbita maxima][more]
BLAST of Spg018576 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LPZ41.2e-0560.00Partner of Y14 and mago OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1[more]
BLAST of Spg018576 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DY251.1e-1289.36partner of Y14 and mago isoform X1 OS=Momordica charantia OX=3673 GN=LOC11102559... [more]
A0A6J1E3411.1e-1289.36partner of Y14 and mago isoform X2 OS=Momordica charantia OX=3673 GN=LOC11102559... [more]
A0A6J1IA061.4e-1287.50partner of Y14 and mago-like OS=Cucurbita maxima OX=3661 GN=LOC111470610 PE=3 SV... [more]
A0A1S3C0A72.4e-1287.50partner of Y14 and mago isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495372 PE=3 ... [more]
A0A5A7SL232.4e-1287.50Partner of Y14 and mago isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of Spg018576 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11400.18.9e-0760.00partner of Y14-MAGO [more]
AT1G11400.28.9e-0760.00partner of Y14-MAGO [more]
AT1G11400.38.9e-0760.00partner of Y14-MAGO [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018576.1Spg018576.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1903259 exon-exon junction complex disassembly
cellular_component GO:0005737 cytoplasm
cellular_component GO:0035145 exon-exon junction complex
molecular_function GO:0003723 RNA binding