Spg018576.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg018576.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	partner of Y14 and mago-like
Location	scaffold3: 19723734 .. 19724304 (+)
Sequence length	219
RNA-Seq Expression	Spg018576.1
Synteny	Spg018576.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAACATCTTTTAATGAATTATTGGTGTCATTATGGACAGCTGAAGATTTGAGTTTTTGCTTAATATTTGTAAGTTTTTGTTTTATTTGTCTCTGAGGATTACAGCATGTTTAATCATTTTCGTTGCCTTGTTCTCTTGTTTTGGTTTGCAGATTCGAATTGCAGAAGCTCAGTTGCAGAAAACACCACTGCATGATATGAAGCCAGAGCAGTTGAACAAGTTATCAAAACTCGAAGATTGGCGCTCTGAACTAATGCTTCTCGAAGAACAAAGGCTAAAACAGAACACGTCGTCATGAATGAATGAATGCAAGGCAGCATTATTGTTCACTTTATTTATGCTTTCTGATAAAGAAAGAGACCAGGAATTTTGCTACAACAAAAGCATTTCGATTTGTACTTTGAAGATCTAATCACCTGTAAAACTCCACTTCTTTTAATGTGTTGTGTAATTGCATTTCAACTAGTTTTAGGAACCGCTTGAACTGTAGATAGTGTTAAAAACATTGATTTTTTTTTTTTTTGACAAAATGTTAAAAACATTGATTTTCTTTCGCCTGAACGTGAT

mRNA sequence

ATGCGAACATCTTTTAATGAATTATTGGTGTCATTATGGACAGCTGAAGATTTGAGTTTTTGCTTAATATTTATTCGAATTGCAGAAGCTCAGTTGCAGAAAACACCACTGCATGATATGAAGCCAGAGCAGTTGAACAAGTTATCAAAACTCGAAGATTGGCGCTCTGAACTAATGCTTCTCGAAGAACAAAGGCTAAAACAGAACACGTCGTCATGA

Coding sequence (CDS)

ATGCGAACATCTTTTAATGAATTATTGGTGTCATTATGGACAGCTGAAGATTTGAGTTTTTGCTTAATATTTATTCGAATTGCAGAAGCTCAGTTGCAGAAAACACCACTGCATGATATGAAGCCAGAGCAGTTGAACAAGTTATCAAAACTCGAAGATTGGCGCTCTGAACTAATGCTTCTCGAAGAACAAAGGCTAAAACAGAACACGTCGTCATGA

Protein sequence

MRTSFNELLVSLWTAEDLSFCLIFIRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS

Homology

[Close]

BLAST of Spg018576.1 vs. NCBI nr
Match: XP_023554038.1 (partner of Y14 and mago-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 183 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKPNSFS 230

[Close]

BLAST of Spg018576.1 vs. NCBI nr
Match: XP_022159168.1 (partner of Y14 and mago isoform X1 [Momordica charantia] >XP_022159169.1 partner of Y14 and mago isoform X1 [Momordica charantia] >XP_022159170.1 partner of Y14 and mago isoform X1 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 182 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 228

[Close]

BLAST of Spg018576.1 vs. NCBI nr
Match: XP_023554039.1 (partner of Y14 and mago-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 167 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKPNSFS 214

[Close]

BLAST of Spg018576.1 vs. NCBI nr
Match: XP_022159171.1 (partner of Y14 and mago isoform X2 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 143 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 189

[Close]

BLAST of Spg018576.1 vs. NCBI nr
Match: XP_022971939.1 (partner of Y14 and mago-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 183 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS 230

[Close]

BLAST of Spg018576.1 vs. ExPASy Swiss-Prot
Match: Q9LPZ4 (Partner of Y14 and mago OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

[Close]

BLAST of Spg018576.1 vs. ExPASy TrEMBL
Match: A0A6J1DY25 (partner of Y14 and mago isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025593 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 182 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 228

[Close]

BLAST of Spg018576.1 vs. ExPASy TrEMBL
Match: A0A6J1E341 (partner of Y14 and mago isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025593 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTS 72
           IRIAEAQLQKTP+ DMKPEQLNKLSKLEDWRSEL LLEEQRL+ NTS
Sbjct: 143 IRIAEAQLQKTPMQDMKPEQLNKLSKLEDWRSELTLLEEQRLQLNTS 189

[Close]

BLAST of Spg018576.1 vs. ExPASy TrEMBL
Match: A0A6J1IA06 (partner of Y14 and mago-like OS=Cucurbita maxima OX=3661 GN=LOC111470610 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IRIAEAQLQKTPL DMKPEQ+NKLSKLE+WRSELMLLEEQRLK N+ S
Sbjct: 183 IRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS 230

[Close]

BLAST of Spg018576.1 vs. ExPASy TrEMBL
Match: A0A1S3C0A7 (partner of Y14 and mago isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495372 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IR+AEAQLQKTPL DMKPEQ NKLSKLE WRSELMLLEEQRLK N+SS
Sbjct: 184 IRMAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRLKLNSSS 231

[Close]

BLAST of Spg018576.1 vs. ExPASy TrEMBL
Match: A0A5A7SL23 (Partner of Y14 and mago isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001860 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQRLKQNTSS 73
           IR+AEAQLQKTPL DMKPEQ NKLSKLE WRSELMLLEEQRLK N+SS
Sbjct: 184 IRMAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRLKLNSSS 231

[Close]

BLAST of Spg018576.1 vs. TAIR 10
Match: AT1G11400.1 (partner of Y14-MAGO )

HSP 1 Score: 50.1 bits (118), Expect = 8.9e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

[Close]

BLAST of Spg018576.1 vs. TAIR 10
Match: AT1G11400.2 (partner of Y14-MAGO )

HSP 1 Score: 50.1 bits (118), Expect = 8.9e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

[Close]

BLAST of Spg018576.1 vs. TAIR 10
Match: AT1G11400.3 (partner of Y14-MAGO )

HSP 1 Score: 50.1 bits (118), Expect = 8.9e-07
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 25  IRIAEAQLQKTPLHDMKPEQLNKLSKLEDWRSELMLLEEQ 65
           IR+ EAQ QKT   D+ PEQL K SKLE+WR EL  LE++
Sbjct: 163 IRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202

The following BLAST results are available for this feature:

BLAST of Spg018576.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554038.1	2.3e-12	87.50	partner of Y14 and mago-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022159168.1	2.3e-12	89.36	partner of Y14 and mago isoform X1 [Momordica charantia] >XP_022159169.1 partner...	[more]
XP_023554039.1	2.3e-12	87.50	partner of Y14 and mago-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022159171.1	2.3e-12	89.36	partner of Y14 and mago isoform X2 [Momordica charantia]	[more]
XP_022971939.1	3.0e-12	87.50	partner of Y14 and mago-like [Cucurbita maxima]	[more]

BLAST of Spg018576.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPZ4	1.2e-05	60.00	Partner of Y14 and mago OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]

BLAST of Spg018576.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY25	1.1e-12	89.36	partner of Y14 and mago isoform X1 OS=Momordica charantia OX=3673 GN=LOC11102559...	[more]
A0A6J1E341	1.1e-12	89.36	partner of Y14 and mago isoform X2 OS=Momordica charantia OX=3673 GN=LOC11102559...	[more]
A0A6J1IA06	1.4e-12	87.50	partner of Y14 and mago-like OS=Cucurbita maxima OX=3661 GN=LOC111470610 PE=3 SV...	[more]
A0A1S3C0A7	2.4e-12	87.50	partner of Y14 and mago isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495372 PE=3 ...	[more]
A0A5A7SL23	2.4e-12	87.50	Partner of Y14 and mago isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Spg018576.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11400.1	8.9e-07	60.00	partner of Y14-MAGO	[more]
AT1G11400.2	8.9e-07	60.00	partner of Y14-MAGO	[more]
AT1G11400.3	8.9e-07	60.00	partner of Y14-MAGO	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg018576	Spg018576	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg018576.1-cds	Spg018576.1-cds-scaffold3:19723734..19723805	CDS
Spg018576.1-cds	Spg018576.1-cds-scaffold3:19723889..19724035	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg018576.1-three_prime_utr	Spg018576.1-three_prime_utr-scaffold3:19724036..19724304	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg018576.1	Spg018576.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1903259	exon-exon junction complex disassembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0035145	exon-exon junction complex
molecular_function	GO:0003723	RNA binding