Spg010968 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg010968
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold4: 25906322 .. 25911293 (+)
RNA-Seq ExpressionSpg010968
SyntenySpg010968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGTCCGTTGAAGTATTCAGAGTCGTTAACGGAGGTATGTTTTTCACCGCTTAACCTTTTGCCAATGTATTGGTATTTTGTAGAACAAAATTAATTTACGAACGGTCCAATTGCTTCCGCTGTAACGGAATTGGGAATTCCAATCCTTCACAAGTAACAACCTAAAAGGTCTATAGTACAGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGATGCGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTGTAATAAGACCGGAGCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAATCTTAATCCTGAGTGTGTCATGAACTCCTTCTCACGAGGGATTGTCCTTTGATTAGTACGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGACAAGACCGAGTGGGGGGCTGGGGACATGACAATACAAGATGGAATTCACTCCTTTCCCTATTGGGGCAAGTAGATGTGTGTTACCTTAAGGGCTGATTCCGGGTCTTGAACAAGGGCGCCCATCCTCTCCTGGCCCGAGAGGAACTGCTGTTTATTGATTGGATCATAAACAGATTGTTCATTAGAGGAATCAGTGGTACTTAAGGATCCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGCGTTACGAACACTCGTGAAGGATTGACTTACTGTTATTGGTCAATATCCGTGGACACAGAAATATTCTACAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCTGTTAACGAATGTTGACTAATTTGGTTAATGAGTTTAGCCAATTAGTCTCGTATCGTTGAAGCTTCTGATCTGTAGGTCCATTATGTCCACCTGCTAGCTCGTAAAGGGTTCTGAGGTTAAATAGTCTTGAATAGAATTTGAAGTATGTTCAAATTCGTTAAGGGAATTTTATTGTATTTGATAAAATTAAAATAATGTATAAAGATACATTATAATATAAGTTTAATTGATGAATTAAACTTTATATTATAAAATTAATTTTGGATGTGATTCAAAATTAATTAATGAGAGAATTAAATATTTGAAAGAGTTCAAATATTAAATATGAATTAGATTCATATTGAAACTATAGGTTAAATTTAATGTGATTGAGATTCATATTAACACTATAGTATATGAGAGAATTATTTGAATAATGATTCAAATAGTAAATTAATTAAATATATGATATTTAATTAATGAATTAATTAATTGGAGAATTAATTAATTTGATTTAATTAAATGTGATTTAATTAAAATTAATTCTATAGTCAATATTAATGTACATTATGATGCACATTAAAACTATAGGTTAAATGAGAGAGATTAAAATTGAATATGATTTAATTGTAATATTAATTAAATATTGGATATTTAATTAACGTGGATTCAATTAATGAGATTAATTGAATGGCCAATTTAATTCAATTTAATATGATTCAAGTTGAATTAAAATATCTTATGTTATAATTGATTTAATTAATATTGTTTTAATTAAATTAATTATAATTAATTAATTAATTAAATGATTATTATTATTTAATTAATTGACGGCCAAGATCGTTTGGATTAGATCCAACGATCGAGATTAAGTAGGGTAATACTTCTCTCCCCACTTATCGTAAAGTGGAGAGGGGTTACCAATACGCTACTTATTTTTCTCATTTTTTTCAGAGAAAAAAAAAATTCTCTCTCACCTCCCCCTCTCTGAGATTCTCTAAAAATTTTTTTTTCAGCAACATTCTGCTGGAAAATCATTCCCAACTCAAGATTGGATCCCACAATCCAAGCCTCATGAATTCAGAGGATAGCGGGTGCTCTTTGATGGTTGTGTTCAAGAGATCGTGACGAAGGGTTCGTTGAGGAGCATAGTGCTGTGAAGAACAGTCTTCAACAAGTAAGTTCCTAAAATTCTAAATCGTTTAGAATTAGTAATTGCATGCTTAATCTAGTTTAGAAAATAATTTTCTATTTTGCCTAACGTACCGGTATTCGAAATAATTGAAATTAAATCACGCACGATTCAATTCGCTTCCGCTTTAAGGATTTAATTCCTTCACATTGAAGGGGAATTCTATCGACTGGTATACCGACCTTGAGCCTGAGACTATCGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAACCGCTTCTACAGCACAAGACGAACCGACAGTATGACGGAGCTCACCAGCGCTAAACAACGGAAAGGCGAACCGGTTGTTGACTACATCAATCATTGGAGAGCTTTAAACTTAGATTGCAAGGACCGACTCACCGAATTGTCTGCTGTTGAAATGTGCATCCAAGGCATGCATTGGGGACTCCTCTATATCCTACAAGGAATAAAGCCCCGCACTTTCGATGAGTTGGCAACCCAGGCTCATGACATGGAATTGAGCATTGCTACTAGAGGGAACAAAGATCCTTTTGTCCCCGATGACAGGAAAGAAAAGAAAGAAGTTAAGAATACTGAGAAAACTACCAAAAGCACTACCAAAGAGTCAATGGTAGTCAATGCAGCTCCTTTCAAGTTTTCTTCGAAAGGAAAAGAATGTAAGCGACCAGAAGAGATGGGGAGAGTTAATGATCCCAACTACTGCAAATATCACCGAGTCATCAGCCACCCGGTGGAAAAGTGCTTTGTTCTGAAGGAGCTAATTTTGAAGTTAGCTAAAGAAAAGAAAATTGAGTTAGATCTTGATGAGGTAGCTCAATCAAATCATGCGATAATAGCAACAAACCTCAACAACCGAGTAGCTCCAAGCCCGATTCATAATTCAGTAGTAAGTCGGATCCAGTTCGGGACATTAGAGCCGATTGTTATTTGGCTTCAGCAAGAATCTTCAAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCCTCACATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAAGAGAAAGACAAAATGTTTAAGAAAACCTAAACTAGTTGTTGAAGAGAATCAAAATTTTGTTCTATCTCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTATTAATGACGATCATGAGGATATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCTTCAAGTCCATCTCAGGTGATGACGAGGCCAGAAGATTCACCTTCATTCACAATAGATGATTTGGTGTCACTCCCTCAAGCAACCAAAGATGCTATTGTTGAAACATTGAAAAGTTCTAACGTTGCAGACATTCCAGACTTGCAAGGACATAGATGTGCCTCATGTTGTATGTCAATTAGCTTCACAGATGAAGACTTGATGTTGGGATCGAAGCCTCATAATAGGCCTTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTGGCCGAATTCTTATCGGCAATAGATCTGCGGTGAATATAATGCCTGAGTCAACCATGACACACAGATAGGAATTTCAATGGATGAACTATCAAACAGTAGGTTGGTTATTCAAGGCTTCAACCAAGGCGGCCAACGAGCAATCGGCATGATCCGTTTGGAGCTTGTTATTAGAGATTTGAAGGCTAACACTTTATTCCATATCATAGATTCCAAGACCACTTACAAGTTGTTGTTAGGTCGTCCTTGGATTCACGGAAATGGATTAATATCTTCTACACTTCATCAGTGTTTCAAGTTCTATCAAGACGGCGTAAAGAAAGTTGAAGCTGATACTAATCCCTTCTCAGAGGCAGAATCCCACTTTGCAGATGCAAAGTTTTATATGCAGAATGATAAAATAGGGGAGATCATACCAACTGAGATTCCTCTGATTGAAAGTCACAAAGAAGAGCATCCAAAGAATGCGAAGAAGGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGCGAAATCAAAGGCTCCAAAGGAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGTGGAGTCACCATTCACAGAATGTTCAGGGATTTTGAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTTATCACACCTCTGACAACAATTACTAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCAAAGTGACTTTTCCGGAAAGACAAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAAGTCTAATCTTCGATGGGAGATCTGAGCTTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGGTTATGCCAACCATCCTCGAGAGTCGGACTAGGGTACAATCCCCCAAAGCCAGTTCGTATAACCAGAAAATGGAAAGTTGCAGATGCACATCACATAACGATAGAAGAGATGAGCGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTTTGTCTTTGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAGTATTCATCTTCAGAAAAGGAAGGTCAGAGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCGTGTTCGACCGCCTTCAAGCAACAAATGGCCAATGCAAGGGAAAGTTGAAAAGCCTCGAAACAGAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTTCCTTCGCAGATGAAGAGAAAACCTTTC

mRNA sequence

ATGGTGGTGTCCGTTGAAGTATTCAGAGTCGTTAACGGAGGTCCATTATGTCCACCTGCTAGCTCAGATCGTGACGAAGGGTTCGTTGAGGAGCATAGTGCTGTGAAGAACAGTCTTCAACAACAAGAATCTTCAAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCCTCACATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAAGAGAAAGACAAAATGTTTAAGAAAACCTAAACTAGTTGTTGAAGAGAATCAAAATTTTGTTCTATCTCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTATTAATGACGATCATGAGGATATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCTTCAAGTCCATCTCAGCATCCAAAGAATGCGAAGAAGGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGCGAAATCAAAGGCTCCAAAGGAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGTGGAGTCACCATTCACAGAATGTTCAGGGATTTTGAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTTATCACACCTCTGACAACAATTACTAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCAAAGTGACTTTTCCGGAAAGACAAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAAGTCTAATCTTCGATGGGAGATCTGAGCTTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGATGCACATCACATAACGATAGAAGAGATGAGCGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTTTGTCTTTGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAGTATTCATCTTCAGAAAAGGAAGGTCAGAGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCGTGTTCGACCGCCTTCAAGCAACAAATGGCCAATGCAAGGGAAAGTTGAAAAGCCTCGAAACAGAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTTCCTTCGCAGATGAAGAGAAAACCTTTC

Coding sequence (CDS)

ATGGTGGTGTCCGTTGAAGTATTCAGAGTCGTTAACGGAGGTCCATTATGTCCACCTGCTAGCTCAGATCGTGACGAAGGGTTCGTTGAGGAGCATAGTGCTGTGAAGAACAGTCTTCAACAACAAGAATCTTCAAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTTCGTTCAAAGAGAGCCTCACATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAAGAGAAAGACAAAATGTTTAAGAAAACCTAAACTAGTTGTTGAAGAGAATCAAAATTTTGTTCTATCTCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTATTAATGACGATCATGAGGATATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCTTCAAGTCCATCTCAGCATCCAAAGAATGCGAAGAAGGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGCGAAATCAAAGGCTCCAAAGGAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCGCAAGAAAGTGGAGTCACCATTCACAGAATGTTCAGGGATTTTGAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTTATCACACCTCTGACAACAATTACTAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCAAAGTGACTTTTCCGGAAAGACAAACGAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAAGTCTAATCTTCGATGGGAGATCTGAGCTTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGATGCACATCACATAACGATAGAAGAGATGAGCGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTTTGTCTTTGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAGTATTCATCTTCAGAAAAGGAAGGTCAGAGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCGTGTTCGACCGCCTTCAAGCAACAAATGGCCAATGCAAGGGAAAGTTGAAAAGCCTCGAAACAGAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTTCCTTCGCAGATGAAGAGAAAACCTTTC

Protein sequence

MVVSVEVFRVVNGGPLCPPASSDRDEGFVEEHSAVKNSLQQQESSSDIFQDQLESVENEDEGWTLVTRRKKQKKHFVQREPHMFRNYRRKNMSQKQKRKTKCLRKPKLVVEENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVACHAVNAFEEGDSSSSPSQHPKNAKKESIEEVDACEVQTKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTECSGILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKAGYDFTTHTEFKSLIFDGRSELSPTQKKLQKEDAHHITIEEMSDPEDKKNDDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEGQRKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNGQCKGKLKSLETEESDEMNDNNGFSSTVPSQMKRKPF
Homology
BLAST of Spg010968 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 9.9e-50
Identity = 168/492 (34.15%), Postives = 236/492 (47.97%), Query Frame = 0

Query: 35  VKNSLQQQESSSDIFQDQLESVENEDEGWTLVTRRKKQKKHFVQREPHMFRNYRRKNMSQ 94
           +K  L+++ +  D  Q++   +E +DEGWT+VTRRKK+K   +Q+E  ++ NYRR N +Q
Sbjct: 454 IKLDLEEEVTPED-SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQ 513

Query: 95  KQKRKTKCLRKPKLVVEENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVA-------- 154
           K K+K K  RK KLV E++++F  ++  VTL DFFP  F+ D  ++ P +VA        
Sbjct: 514 KNKKKKK-TRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAP 573

Query: 155 ---------CHAVNAFEEG----------------------------DSSSSPSQHPKNA 214
                    C +++  +E                             D+ S+ +  PK+ 
Sbjct: 574 IATYESTPYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKST 633

Query: 215 -----------------------------------KKESIEEVDACEVQ----------- 274
                                              K +   EV + EV            
Sbjct: 634 MRQLGILMEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLK 693

Query: 275 -----------------TKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTEC 334
                              EA T  AKS    +E +SN PILRYVPLSRRKK ESPF E 
Sbjct: 694 SLASRESHKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEF 753

Query: 335 SGILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKA 389
              LKVGD+E+LKE+F TPLT ITKQEI   K D  + + P+R+TK GFDP AYK + KA
Sbjct: 754 PQGLKVGDIEVLKESFTTPLTKITKQEI---KIDLIEASLPQRRTKDGFDPKAYKSMAKA 813

BLAST of Spg010968 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-47
Identity = 189/640 (29.53%), Postives = 258/640 (40.31%), Query Frame = 0

Query: 42  QESSSDIFQDQLESVENEDEGWTLVTRRKKQKKHFVQREPHMFRNYRRKNMSQKQKRKTK 101
           QE + +  Q++   +E +DE WT+VTRRKK+K   +Q+E   +RNYRR N +QK K+K K
Sbjct: 356 QEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKK 415

Query: 102 CLRKPKLVVEENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVACHAVNAFEEG----- 161
             RK KL+ +E+++F  ++  +TL DFFP  F+ D  ++ P +VACHA+NA EE      
Sbjct: 416 -TRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLR 475

Query: 162 ------------------------------------------------------------ 221
                                                                       
Sbjct: 476 SLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDF 535

Query: 222 --------------------------------DSSSSPSQHPKNA--------------- 281
                                           D+ S+ +  PK+                
Sbjct: 536 SNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSK 595

Query: 282 -----------------------------------------KKESIEEVDACEV------ 341
                                                    K +S  EV + EV      
Sbjct: 596 LVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNRE 655

Query: 342 ----------------------QTKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVE 401
                                 +  EA T  AKS    +E +SN  ILRYVPLSRRKK E
Sbjct: 656 DNLQLKSLASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGE 715

Query: 402 SPFTECSGILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAY 446
           SPF E    LKVGD+E+LKE+F TPLT ITKQEI   K D T+ + P+R+TK  FDP AY
Sbjct: 716 SPFVESPQGLKVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDEFDPKAY 775

BLAST of Spg010968 vs. NCBI nr
Match: KAA0062018.1 (uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-41
Identity = 129/333 (38.74%), Postives = 171/333 (51.35%), Query Frame = 0

Query: 169 AKKESIEEVDACEVQTKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTECSG 228
           A KE  + +     +  EA T  AKS    +E +SN PIL YVPLSRRKK ESPF E S 
Sbjct: 221 ASKEPHKSIGTFHSEKSEASTSTAKSVILMDEKTSNPPILCYVPLSRRKKGESPFVESSQ 280

Query: 229 ILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKAGY 288
            LKVGD+E+LKE+F TPLT ITKQEI   K D T+ + P+R+TK  FDP AYKL+ KAGY
Sbjct: 281 GLKVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPKRRTKDEFDPKAYKLMAKAGY 340

Query: 289 DFTTHTEFKSLIFDGRSELSPTQKKLQKE------------------------------D 348
           DFTTHTEFKSL    + ++S TQKKL +E                              D
Sbjct: 341 DFTTHTEFKSLKIHEQPKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVD 400

Query: 349 AHHITIEEMSDPEDKKNDDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEGQRKTSAPTR 408
           ++HI ++E+   E+K+  DSQ+   FDRI     R  V +RL    +E++  + TS   R
Sbjct: 401 SNHIIVKEVDSMEEKEG-DSQRTSAFDRISPHVARAPVFERLSVIEAERKDHQSTSNLDR 460

Query: 409 RSVFHRLSVSTSKKVDEPLRSVFDRLQATNGQCKGKLKSLETEESD-------------- 446
           +S F RLS++  K    P   + +RL    G       S++T++ +              
Sbjct: 461 QSAFERLSITKKKNAQTPRAPIINRL-GDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHI 520

BLAST of Spg010968 vs. NCBI nr
Match: KAA0062018.1 (uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa])

HSP 1 Score: 46.2 bits (108), Expect = 8.5e-01
Identity = 28/98 (28.57%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 111 EENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVACHAVNAFEEGD---SSSSPSQHPK 170
           EE+++F  ++  +TL DFFP  F+ D  ++ P +VACHA+NA EE      S    +  K
Sbjct: 3   EEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSK 62

Query: 171 NAKKESIEEVDACEVQTKEAPTHPAKSKAPKEEASSNV 206
           +  + +++++ +   +TK    +   + A    ++S V
Sbjct: 63  DLSRFNVDDLLSLPQETKTILINALLNSAASSSSASTV 100


HSP 2 Score: 179.5 bits (454), Expect = 6.4e-41
Identity = 133/341 (39.00%), Postives = 167/341 (48.97%), Query Frame = 0

Query: 186 EAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTECSGILKVGDVEILKENFITP 245
           EA T   K    K+E ++N P+LRYVPLSRRKK ESPF E    LKVGD+EI+KE+F TP
Sbjct: 308 EAYTSSTKGMILKDENAANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIKESFTTP 367

Query: 246 LTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKAGYDFTTHTEFKSLIFDGRS 305
           LT I KQE+   K D  +   P+R+TK GFDP AYKL+ KAGYDFT HTEFKSL    R 
Sbjct: 368 LTKIAKQEV---KVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHDRP 427

Query: 306 ELSPTQKKLQKE------------------------------DAHHITIEEMSDPEDKKN 365
           ELS TQKKL +E                              D +HITIEE  D  D K 
Sbjct: 428 ELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKE 487

Query: 366 DDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEG-------------QRKTSAP------ 425
            D+Q+I VFDRI+    R  V +RL  + +E+E              +R T+ P      
Sbjct: 488 GDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTTPIKEEST 547

Query: 426 ------TRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNGQCKGKLKSLETEESDEMN--- 446
                 TR S F RL VS  K V  P   +F+ L    G       +++T++ + M+   
Sbjct: 548 CHALTTTRPSAFERLGVSKKKNVQAPRAPIFNHL-GDKGSHDNIDSNIDTKKKEPMSRVK 607

BLAST of Spg010968 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-41
Identity = 133/341 (39.00%), Postives = 167/341 (48.97%), Query Frame = 0

Query: 186 EAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTECSGILKVGDVEILKENFITP 245
           EA T   K    K+E ++N P+LRYVPLSRRKK ESPF E    LKVGD+EI+KE+F TP
Sbjct: 308 EAYTSSTKGMILKDENAANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIKESFTTP 367

Query: 246 LTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKAGYDFTTHTEFKSLIFDGRS 305
           LT I KQE+   K D  +   P+R+TK GFDP AYKL+ KAGYDFT HTEFKSL    R 
Sbjct: 368 LTKIAKQEV---KVDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHDRP 427

Query: 306 ELSPTQKKLQKE------------------------------DAHHITIEEMSDPEDKKN 365
           ELS TQKKL +E                              D +HITIEE  D  D K 
Sbjct: 428 ELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKE 487

Query: 366 DDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEG-------------QRKTSAP------ 425
            D+Q+I VFDRI+    R  V +RL  + +E+E              +R T+ P      
Sbjct: 488 GDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTTPIKEEST 547

Query: 426 ------TRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNGQCKGKLKSLETEESDEMN--- 446
                 TR S F RL VS  K V  P   +F+ L    G       +++T++ + M+   
Sbjct: 548 CHALTTTRPSAFERLGVSKKKNVQAPRAPIFNHL-GDKGSHDNIDSNIDTKKKEPMSRVK 607

BLAST of Spg010968 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-50
Identity = 168/492 (34.15%), Postives = 236/492 (47.97%), Query Frame = 0

Query: 35  VKNSLQQQESSSDIFQDQLESVENEDEGWTLVTRRKKQKKHFVQREPHMFRNYRRKNMSQ 94
           +K  L+++ +  D  Q++   +E +DEGWT+VTRRKK+K   +Q+E  ++ NYRR N +Q
Sbjct: 454 IKLDLEEEVTPED-SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQ 513

Query: 95  KQKRKTKCLRKPKLVVEENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVA-------- 154
           K K+K K  RK KLV E++++F  ++  VTL DFFP  F+ D  ++ P +VA        
Sbjct: 514 KNKKKKK-TRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAP 573

Query: 155 ---------CHAVNAFEEG----------------------------DSSSSPSQHPKNA 214
                    C +++  +E                             D+ S+ +  PK+ 
Sbjct: 574 IATYESTPYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKST 633

Query: 215 -----------------------------------KKESIEEVDACEVQ----------- 274
                                              K +   EV + EV            
Sbjct: 634 MRQLGILMEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLK 693

Query: 275 -----------------TKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTEC 334
                              EA T  AKS    +E +SN PILRYVPLSRRKK ESPF E 
Sbjct: 694 SLASRESHKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEF 753

Query: 335 SGILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKA 389
              LKVGD+E+LKE+F TPLT ITKQEI   K D  + + P+R+TK GFDP AYK + KA
Sbjct: 754 PQGLKVGDIEVLKESFTTPLTKITKQEI---KIDLIEASLPQRRTKDGFDPKAYKSMAKA 813

BLAST of Spg010968 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-47
Identity = 189/640 (29.53%), Postives = 258/640 (40.31%), Query Frame = 0

Query: 42  QESSSDIFQDQLESVENEDEGWTLVTRRKKQKKHFVQREPHMFRNYRRKNMSQKQKRKTK 101
           QE + +  Q++   +E +DE WT+VTRRKK+K   +Q+E   +RNYRR N +QK K+K K
Sbjct: 356 QEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKK 415

Query: 102 CLRKPKLVVEENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVACHAVNAFEEG----- 161
             RK KL+ +E+++F  ++  +TL DFFP  F+ D  ++ P +VACHA+NA EE      
Sbjct: 416 -TRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLR 475

Query: 162 ------------------------------------------------------------ 221
                                                                       
Sbjct: 476 SLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDF 535

Query: 222 --------------------------------DSSSSPSQHPKNA--------------- 281
                                           D+ S+ +  PK+                
Sbjct: 536 SNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSK 595

Query: 282 -----------------------------------------KKESIEEVDACEV------ 341
                                                    K +S  EV + EV      
Sbjct: 596 LVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNRE 655

Query: 342 ----------------------QTKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVE 401
                                 +  EA T  AKS    +E +SN  ILRYVPLSRRKK E
Sbjct: 656 DNLQLKSLASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGE 715

Query: 402 SPFTECSGILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAY 446
           SPF E    LKVGD+E+LKE+F TPLT ITKQEI   K D T+ + P+R+TK  FDP AY
Sbjct: 716 SPFVESPQGLKVGDIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDEFDPKAY 775

BLAST of Spg010968 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.9e-41
Identity = 113/250 (45.20%), Postives = 148/250 (59.20%), Query Frame = 0

Query: 169 AKKESIEEVDACEVQTKEAPTHPAKSKAPKEEASSNVPILRYVPLSRRKKVESPFTECSG 228
           A KE  + +        EA T+ AKS    +E +SN PILRYVPLSRRKK ESPF E   
Sbjct: 296 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 355

Query: 229 ILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKAGY 288
            LKVG++E+LKE+F TPLT ITKQEI   K D T+ + P+R+TK GFDP AYKL+ KAGY
Sbjct: 356 GLKVGEIEVLKESFTTPLTKITKQEI---KIDLTEASLPQRRTKDGFDPKAYKLMAKAGY 415

Query: 289 DFTTHTEFKSLIFDGRSELSPTQKKLQKE------------------------------D 348
           DFTTHTEFKSL    + +LS TQKKL +E                              D
Sbjct: 416 DFTTHTEFKSLKIYEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVD 475

Query: 349 AHHITIEEMSDPEDKKNDDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEGQRKTSAPTR 389
           ++HIT++E +D  ++K  DSQ+   FDRI     R  V ++L  + +E++  + TS   R
Sbjct: 476 SNHITLKE-ADSMEEKEGDSQRTSAFDRISPHVARAPVFEKLSMTEAERKDHQSTSNLDR 535

BLAST of Spg010968 vs. ExPASy TrEMBL
Match: A0A5A7UD46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001280 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-02
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 111 EENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVACHAVNAFEE 156
           EE+++F  ++  VTL DFFP  F+ D  ++ P +V CHA+NA EE
Sbjct: 3   EEDKDFPRTQRLVTLADFFPTRFLGDHQDENPGVVECHAINATEE 47


HSP 2 Score: 177.2 bits (448), Expect = 1.5e-40
Identity = 129/313 (41.21%), Postives = 161/313 (51.44%), Query Frame = 0

Query: 178  DACEVQTKEAPTHPAKSKAPKEE-------ASSNVPILRYVPLSRRKKVESPFTECSGIL 237
            DA   Q     T   K +AP+ E         SN P+LRY+PLSRRKK ESPF ECS  L
Sbjct: 780  DALNSQQNGESTTETKLRAPEAEKIATLRKEVSNFPVLRYIPLSRRKKGESPFAECSKNL 839

Query: 238  KVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEKAGYDF 297
             V + EILKENFI PLT I K E ++ +    +   PER+T  GF+P AYKL+ KAGYDF
Sbjct: 840  TVKNTEILKENFIAPLTKIEKGEAKKIEKKDLEAYLPERRTVEGFNPKAYKLMAKAGYDF 899

Query: 298  TTHTEFKSL-IFDGRSELSPTQKKLQKE------------------------------DA 357
            TT TE KS+ IFD R ELSPTQ KLQK+                              + 
Sbjct: 900  TTRTELKSVKIFDERPELSPTQTKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKTKVANT 959

Query: 358  HHITIEEMSDPEDKKNDDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEGQRKTSAPTRR 417
             HIT+EE  D ++ K D SQ+  VFDRI     RLSV QR+  S ++   Q  T + TR 
Sbjct: 960  CHITVEESKDSKEGKKDRSQRSSVFDRIALSAVRLSVFQRVSTSITKDSNQVSTCSSTRL 1019

Query: 418  SVFHRLSVSTSK-----KVDEPLRSVFD--RLQATNGQCKGKLKSLETEESDEMNDNNGF 446
            S F RL+ +  K           +S F   RL  T GQ K  +    + +S  +  +   
Sbjct: 1020 SAFQRLNTNAKKVQSISPTPTTRKSAFKSLRLSVTRGQKKASIS--VSNKSSLVTRDEEI 1079

BLAST of Spg010968 vs. ExPASy TrEMBL
Match: A0A5A7UJR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001080 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 0

Query: 39  LQQQESSSDIFQDQLESVENEDEGWTLVTRRKKQKKHFVQREPHMFRNYRRKNMSQKQKR 98
           LQ  +  +D  +++ + V+N +EGWTLVTRRKK+K+ F Q+E   +R YR K  SQ++  
Sbjct: 416 LQNNDFRTDSPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGSYRTYRSKGKSQRRNT 475

Query: 99  KTKCLRKPKLVVEENQNFVLSRHPVTLKDFFPKNFINDDHEDIPKIVACHAVNAFEEGDS 158
           + K LRK   ++EE++     R P+ LKDFFPKNF  +       I +CH  +  EE   
Sbjct: 476 R-KNLRKFLPIIEESEGLSRPRRPIILKDFFPKNFPME-------IFSCHTTSTTEE--- 535

Query: 159 SSSPSQHPKNAKKESIEEVD 179
                  P NA +E+ +  D
Sbjct: 536 ----DAFPSNAMEETPKPED 540


HSP 2 Score: 176.0 bits (445), Expect = 3.4e-40
Identity = 127/316 (40.19%), Postives = 165/316 (52.22%), Query Frame = 0

Query: 167  KNAKKESIEEVDACEVQTKEAPTHPAKSK-APKEEASSNVPILRYVPLSRRKKVESPFTE 226
            K++K +++      E+ T+     P   K A  ++  SN P+LRY+PLSRRKK ESPFTE
Sbjct: 911  KSSKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYIPLSRRKKGESPFTE 970

Query: 227  CSGILKVGDVEILKENFITPLTTITKQEIQESKTDRTKVTFPERQTKAGFDPNAYKLLEK 286
            CS  L V + EILKENF  PLT I K E ++ +    +   PER+T  GFDP AYKL+ K
Sbjct: 971  CSKNLTVKNTEILKENFTAPLTKIEKGEAKKIEKKDLQAYLPERRTVEGFDPKAYKLMAK 1030

Query: 287  AGYDFTTHTEFKSL-IFDGRSELSPTQKKLQKE--------------------------- 346
            AGYDFTT TE KS+ IFD R ELSPTQKKLQK+                           
Sbjct: 1031 AGYDFTTRTELKSVKIFDERPELSPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKA 1090

Query: 347  ---DAHHITIEEMSDPEDKKNDDSQKIFVFDRIKAPTTRLSVHQRLKYSSSEKEGQRKTS 406
               +  HIT+EE  D E+ K   SQ+  VFDRI     R SV QR+  S ++   Q  T 
Sbjct: 1091 KVANTCHITVEESKDSEEGKKVRSQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQVSTC 1150

Query: 407  APTRRSVFHRLSVSTSK-----KVDEPLRSVFDRLQATNGQCKGKLKSLETEESDEMNDN 446
            + TR S F RL+ S  K           +S F RL  +  + + K     + +S  +  +
Sbjct: 1151 SSTRLSAFQRLNTSAKKVRSISPTPTTRKSAFKRLSVSVTRDQKKASMSVSNKSSLVTGD 1210

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061113.19.9e-5034.15ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... [more]
TYK05005.13.5e-4729.53ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062018.11.7e-4138.74uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa][more]
KAA0062018.18.5e-0128.57uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa][more]
XP_031737372.16.4e-4139.00uncharacterized protein LOC116402244 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BY544.8e-5034.15Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C0W61.7e-4729.53Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UD466.9e-4145.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UD463.7e-0246.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UJR22.2e-1037.86Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]

Pages

Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 408..445
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 360..374
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 358..380
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 427..445
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg010968.1Spg010968.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process