Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGTTCGCACAGAACGGTTATCTCCAGGATATCGACCTCAAAAGGAATGTCGAATTCCTAAATGATAAATCCAAGCTTCTGACAGCTCTTGCTCAAACGACATCTGATGCAGACTTCCAGAGGATTCTTCAAATGGTAACTTCTTCACAAAGTGAATCTCCAGCTTCTTCTGCCAAAGGAGAAGAGAACGAGCCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATGTGAGCTCCGAATCAATTAAAATTTCTTGTTTCACAAAGAAACAAATGATGTTAAAAAAGGTTGCTTCATAAAGAAGTATAACCATCATAATTGTATATAAAAAAAAAAAAAAAAAGAGAAAAAGAAAAAAAAAAAGAAAAAAAAGAAAAAAAAGAAAAAAAAGTGTATATTCTTATCTTTGTAGATTTAATGGGTGTAAACTCCGTACATATTCTAGTTTACACTGTAAATTTTAGCTAGCAAAATATTTTGAAGCAGCAGCAGAGCAGTAAAAGCAAAAGATTTAGAGATTTTGAAGACGAAGATTATTGATAATTCTCCTAGTTCGTGAGGACCTAGTTTGGTGTTCCAGGCTGTAAGTCCCGAAGGCAGTAAGACCGTTGGTAAACCAGTAATTAGCCTAGGGTGATCACATCTCCAAAATTAGCTGGCAACATTCAAATTCCATGCATTTTGTCTATATTCCTTATATTCCCAAGACTTTGTCATTTTATCTTTTTTCATTTCCAACACTTTATCATTTTATCTTTTTCATTTCCAAGACTTACATTTCCAACTTTTGTCTTTAAATATTTCCAAGGTTTGTCTTTTATTTTTTTTGGTATTACCTAGATTTGTCTTTTACCTTTTAGATAATATTTGTATTTCCAACGAAACTATCAGGGGTCCTGTCCTGATTTTTTATCATAGCTTTAAATTTTCTGTATTCAATTTAATTTGAAGTTCGGGGTCTATAAAAGACTTCCAAGTTGTAATTCAAAGGCATCATTCGAAATCCTTCGAACTTCTTGCCATCCTCTTGTACTATCGATCCTGATTCTGATTTTCTCTTTGCGGTTAGCATCGAGCGATTGGTATCAGAGCCATACTCAATAAAATCATCTTCTTTTTCAATTGTTGATTTCAATTTTTCTTTCCGGGGGGAAGAGATTAGTTAGTCGGATTATCATTCAATTTTAGTGATATTCAAATATTACTCAATCCACTTGTAGTCATATTTCGAGAGAGACGATCGTTGGCGAAGTATTTCGCTCAATCACTTGGAAGGACTGTTGCGGTCGGGTGTTCCAGGTCGTAAGACGCGTTGAAGCGCAGTAAAGCCGTTGGTAAGCCTACCTTGCCTTCTTGCCAAAAGAGTGATTAAGGGTAATACTCTTCTGATAATCTATCTTTAGAAGTTTAACTTTATTAGGTTGATAATTATTTGAATTGACACCTTAATTAAATGATAGTCTAAAATTAAATCAATGTCTCTTCTAAAAAAGATTTTGTTTATAAAATTTCCCTCAAAAGAACTTACTCAAGATGAGGTAGAGGACCAACATATGGCCTCTTCAAATTCTGGAGAAATCTCAAATGAAGCTTTGCATATAGCAAAGATTGAAAATAATCTTCAAAAATGGGGTCTACCCAAATTGATAATAAAACTATCTATCTTCATAATACTTTTAATTTCAGAGAACAACAATGTATCAAAATTGTCGAAAGGAAAATCCCTGTATATGGAGATATAGATTCAATTCAATTATTTCCAAAAGACGATATAATTAAACATCGAAAAGAATTTCAATTTCTCCATATAGGAGCGGTCCAAGTTGCTCTTAGACCTATTTTCCGAACAGGACTAGACACGTCAGTATTAGCTATCCTTAGAGATAAACGTCATAAAGACTTTACAAATTCCCTATTAGGAATTATTGAGTCAAACTTAGCAGAGGGACCAGTCTGCTTTACTTGCTATCCTAATTTTATGGTAGCTCTTGACGATCCCCATATTCTCAAAACTTTAAGCCTTGATATTACAGGTCAAGGATTAAATTTAGAAGAAGGTGTTAAAACGATGTGACACTTATTTACAAAATCACTTATAAAACTTTAACATCTTCAATGGAACCAAAGGCATTAGTTCAATCCCCAAAAGGAAAAACAATACTTATTGAGACCAATATTAATAAATCCTCAGTTAGTATCCCTAAGATGCTTTCATGGGATGACATAACAAGAAATCCAAAGTGGACAATCAATAATGCCTTTACACCTCAGAAAAAAGACAAGGAATTATCTCATATAGTTGAGCATCCTGATGGGAGAGTAGATATTAAATTTGAAGATGAGATTCCTCAATTCCCGATGATTAAAGAAAACATAAATAGAAAAGAATTCATGAGTTCAAGAACAAGTACTTCTGGTGTTAAACCAGAATCTCACATTATTGGGACTAATCCCTTAAGAATAAGATCTGTAAGATTGGAACACGGAGTTCCAAATCTCCAATATGAGGAAGAAAAACCACCATCTCCAACTCAAACGAATATGGAGACAGAGTCAATATTTAAAAGTCAATTAATTAAAAATATATATTTTTTTATTTTTCTCTCTCTTCTATCCCCTTCTTCTTTCTCATTTCCCTTAATTCTCTTCCCTCTCCTTTCTCTTTACAACTTCCATGGCCGCCATTGCATTCACTGTTTGCCGTCCACGCCGTCGTCGCGCATGTCGGATCGTCGTCGGAAACCGTCATTCCTTTTATTTTCCTTTTTTCTTTTTTTCCTCTTTTCTTTTTCTTCCCTCATCTACTCCTCTTCTCCTTCTTCTTCCCTTTTCCTTCCTTCCCTTTCTTTTTCATTTTTTTAAAAGAAAAGAACGAAGGGGAAACCCCCTTCATCCGGAAAAACCCCCTTCGTTTCGAATTGGGACAAGAAGATTTTGAACTTGAAGTTCTAGCCCCGCCGATCGAGTCTCCAAAGGGAAATGAACATTTAAACACCGGCTTCGAGTAAGAGAATTCAGCGTTTGAGTTTATCAATAGAGTAGATCGACACGACGGTGGAGACGACGTTAACGACTCCAATGTCGACGACGGAGTAAAGCGTGACGTCGCTCTTGAAACCCAGAGTGTTAAACAGGATCAACGCATGGAACATGATCGTGTTGATTCCAGTGAGCTGCTGGAAGATCGAGAGCACGACAACGATTACTAG
mRNA sequence
ATGGAATGGTTCGCACAGAACGGTTATCTCCAGGATATCGACCTCAAAAGGAATGTCGAATTCCTAAATGATAAATCCAAGCTTCTGACAGCTCTTGCTCAAACGACATCTGATGCAGACTTCCAGAGGATTCTTCAAATGGTAACTTCTTCACAAAGTGAATCTCCAGCTTCTTCTGCCAAAGGAGAAGAGAACGAGCCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATTATCCCTAAGATGCTTTCATGGGATGACATAACAAGAAATCCAAAGTGGACAATCAATAATGCCTTTACACCTCAGAAAAAAGACAAGGAATTATCTCATATAGTTGAGCATCCTGATGGGAGAGTAGATATTAAATTTGAAGATGAGATTCCTCAATTCCCGATGATTAAAGAAAACATAAATAGAAAAGAATTCATGAGTTCAAGAACAAGTACTTCTGGTGTTAAACCAGAATCTCACATTATTGGGACTAATCCCTTAAGAATAAGATCTAATTCAGCGTTTGAGTTTATCAATAGAGTAGATCGACACGACGGTGGAGACGACGTTAACGACTCCAATGTCGACGACGGAGTAAAGCGTGACGTCGCTCTTGAAACCCAGAGTGTTAAACAGGATCAACGCATGGAACATGATCGTGTTGATTCCAGTGAGCTGCTGGAAGATCGAGAGCACGACAACGATTACTAG
Coding sequence (CDS)
ATGGAATGGTTCGCACAGAACGGTTATCTCCAGGATATCGACCTCAAAAGGAATGTCGAATTCCTAAATGATAAATCCAAGCTTCTGACAGCTCTTGCTCAAACGACATCTGATGCAGACTTCCAGAGGATTCTTCAAATGGTAACTTCTTCACAAAGTGAATCTCCAGCTTCTTCTGCCAAAGGAGAAGAGAACGAGCCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATTATCCCTAAGATGCTTTCATGGGATGACATAACAAGAAATCCAAAGTGGACAATCAATAATGCCTTTACACCTCAGAAAAAAGACAAGGAATTATCTCATATAGTTGAGCATCCTGATGGGAGAGTAGATATTAAATTTGAAGATGAGATTCCTCAATTCCCGATGATTAAAGAAAACATAAATAGAAAAGAATTCATGAGTTCAAGAACAAGTACTTCTGGTGTTAAACCAGAATCTCACATTATTGGGACTAATCCCTTAAGAATAAGATCTAATTCAGCGTTTGAGTTTATCAATAGAGTAGATCGACACGACGGTGGAGACGACGTTAACGACTCCAATGTCGACGACGGAGTAAAGCGTGACGTCGCTCTTGAAACCCAGAGTGTTAAACAGGATCAACGCATGGAACATGATCGTGTTGATTCCAGTGAGCTGCTGGAAGATCGAGAGCACGACAACGATTACTAG
Protein sequence
MEWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMVTSSQSESPASSAKGEENEPDYELDDPCLDSQPIIPKMLSWDDITRNPKWTINNAFTPQKKDKELSHIVEHPDGRVDIKFEDEIPQFPMIKENINRKEFMSSRTSTSGVKPESHIIGTNPLRIRSNSAFEFINRVDRHDGGDDVNDSNVDDGVKRDVALETQSVKQDQRMEHDRVDSSELLEDREHDNDY
Homology
BLAST of Spg010584 vs. NCBI nr
Match:
KAA0034823.1 (hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa])
HSP 1 Score: 95.1 bits (235), Expect = 8.5e-16
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMV--TSSQSESPASS 61
EWFA+N YLQDID ++NVEFLNDKSKLL ALAQ T+DADFQR+L SS S+SP+SS
Sbjct: 26 EWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADFQRLLSTAVNASSSSKSPSSS 85
Query: 62 AKGEEN--EPDYELDDPCLDSQPI 82
+ +E +P+Y+LDD LDSQP+
Sbjct: 86 IQEDEEQIDPEYDLDD--LDSQPM 107
BLAST of Spg010584 vs. NCBI nr
Match:
KAA0025901.1 (hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa])
HSP 1 Score: 91.3 bits (225), Expect = 1.2e-14
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMVTSSQSESPASSAK 61
EWF +NGYLQDID +NV+FLN+KSKLL LAQ T+DADFQR+L ++ + S ++S+
Sbjct: 61 EWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPTTVNASTSSKSTSSF 120
Query: 62 GEENE----PDYELDDPCLDSQPI 82
+E+E P+Y+LD+P LDSQP+
Sbjct: 121 LQEDEEQVDPEYDLDNPFLDSQPM 144
BLAST of Spg010584 vs. NCBI nr
Match:
TYJ98361.1 (hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa])
HSP 1 Score: 76.6 bits (187), Expect = 3.1e-10
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 0
Query: 4 FAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQ-MVTSSQSESPASSAKG 63
+ +NG LQDID ++N +FLNDK K L AL Q T DADFQR+L V +S S PA S
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198
Query: 64 EENEP---DYELDDPCLDSQPIIP 84
E+ E +Y+LDDP LDSQP P
Sbjct: 199 EDEEQVDLEYDLDDPFLDSQPRAP 222
BLAST of Spg010584 vs. NCBI nr
Match:
KAA0059031.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADF 42
EWFA NGYLQDID ++N+EFLNDKSKLL ALAQ T+DADF
Sbjct: 92 EWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQATTDADF 131
BLAST of Spg010584 vs. NCBI nr
Match:
XP_031739746.1 (uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetical protein Csa_012459 [Cucumis sativus])
HSP 1 Score: 70.5 bits (171), Expect = 2.2e-08
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRIL 46
EWFA+N YLQDID ++N+EFLNDKSKLL LAQ T+D +FQR+L
Sbjct: 36 EWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTDTNFQRLL 79
BLAST of Spg010584 vs. ExPASy TrEMBL
Match:
A0A5A7SWC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00570 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 4.1e-16
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMV--TSSQSESPASS 61
EWFA+N YLQDID ++NVEFLNDKSKLL ALAQ T+DADFQR+L SS S+SP+SS
Sbjct: 26 EWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQATTDADFQRLLSTAVNASSSSKSPSSS 85
Query: 62 AKGEEN--EPDYELDDPCLDSQPI 82
+ +E +P+Y+LDD LDSQP+
Sbjct: 86 IQEDEEQIDPEYDLDD--LDSQPM 107
BLAST of Spg010584 vs. ExPASy TrEMBL
Match:
A0A5A7SNT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001890 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 5.9e-15
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQMVTSSQSESPASSAK 61
EWF +NGYLQDID +NV+FLN+KSKLL LAQ T+DADFQR+L ++ + S ++S+
Sbjct: 61 EWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPTTVNASTSSKSTSSF 120
Query: 62 GEENE----PDYELDDPCLDSQPI 82
+E+E P+Y+LD+P LDSQP+
Sbjct: 121 LQEDEEQVDPEYDLDNPFLDSQPM 144
BLAST of Spg010584 vs. ExPASy TrEMBL
Match:
A0A5D3BI61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00950 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 0
Query: 4 FAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRILQ-MVTSSQSESPASSAKG 63
+ +NG LQDID ++N +FLNDK K L AL Q T DADFQR+L V +S S PA S
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198
Query: 64 EENEP---DYELDDPCLDSQPIIP 84
E+ E +Y+LDDP LDSQP P
Sbjct: 199 EDEEQVDLEYDLDDPFLDSQPRAP 222
BLAST of Spg010584 vs. ExPASy TrEMBL
Match:
A0A5A7UZX0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 6.4e-09
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADF 42
EWFA NGYLQDID ++N+EFLNDKSKLL ALAQ T+DADF
Sbjct: 92 EWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQATTDADF 131
BLAST of Spg010584 vs. ExPASy TrEMBL
Match:
A0A0A0KYU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 2 EWFAQNGYLQDIDLKRNVEFLNDKSKLLTALAQTTSDADFQRIL 46
EWFA+N YLQDID ++N+EFLNDKSKLL LAQ T+D +FQR+L
Sbjct: 29 EWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTDTNFQRLL 72
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0034823.1 | 8.5e-16 | 63.10 | hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa] | [more] |
| KAA0025901.1 | 1.2e-14 | 54.76 | hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa] | [more] |
| TYJ98361.1 | 3.1e-10 | 53.57 | hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa] | [more] |
| KAA0059031.1 | 1.3e-08 | 80.00 | polyprotein [Cucumis melo var. makuwa] | [more] |
| XP_031739746.1 | 2.2e-08 | 70.45 | uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetica... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SWC0 | 4.1e-16 | 63.10 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SNT5 | 5.9e-15 | 54.76 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BI61 | 1.5e-10 | 53.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UZX0 | 6.4e-09 | 80.00 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE... | [more] |
| A0A0A0KYU0 | 1.1e-08 | 70.45 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
