Spg007342 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007342
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S25
Location	scaffold5: 28302734 .. 28305812 (+)
RNA-Seq Expression	Spg007342
Synteny	Spg007342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAATACACTCCTTTGGGCGTTGGAGCTACAAGTTGTGGACCTTAAGAGGAGATACCCTAATGTTCTTCTCATACGTGTTCTGGGTATTTATGCCCATTTGGATCATAATTTTATGTCTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGGGGAGGCTAGTTAGCGCAGGGTATAAGGTGGGTGTTGTCAAGCAAATCAAAATTGCTGCGATTAAGGCTCATGAGTCAAATAAGTTAGGCCCATTTGCAACATTGGAGGCAACCCAAAATTTAGGGGAGGTAAGAGGGGACTGGAGGAGAGAGTAATTACTTGTTCTGTGTGGTTGAGAAGGTATGTTGGTGGAACATTTGGACTGCAGAATCAGCAGTCTTCCTTCCGTCAATGAATTTAAAAGGTCATTTTGAAACAAGGGTGGAACTTCAAGGATTTAAATTAGGGGTGATCATTGGTCGGTCGGCGTCGGTTTTGGACTCAAACCGACATTGACCACCGACATGTCGATTTTATTCGGTTGATGGTAGTCGGTTACAGAGATGTTTATAGAACCAACCGACCGACCATAAGTATACTTCGGTCGGTTTCGGATGGCTTTGAAAGTTTGCCTTCGCGGGAGCTGTCAAAAGAAAATAGAATGAGTGAGCTGTGAAAAGAAAAGAGAACGAGTGGGGTTCGTGGTGGCGAAGTGCTTTGACAAAGAGACGTTGGGTTTGTGGCAGCGAAGAGCTTTGACAAAGAGACGTTGGGTTTGTGACGTTGAAGAGCTCCGACAAGATATAGATAAAAAGAAAGAGAGAGGGGATGAAATGAGAGTGAGAAGAACTGAAGAAGAGAAAAAGAGAGGGTGGAGAACATTATAGGTTTAAATACCATTTTAGTATCTGAATTTTCAAGTTTATTTCATCCTAGTCCCTAAACTTTAAAAATGTATATTTCAACTTTCATATTTGTTATATTTTGATAGTTAAACATTGGTTAAACAACACATTTGGTCCTTGAACTTTCATAAACGTAACAATTTTAGTCCACGAACTTTAATTTGTAATGATTTAGTCTCAAAACTTTCAGTTTTGTAACAATTTAGTCCCTAAACTTTAATATGTAATAGTTGAGTCCTTTAACTTTAAAATTTGTAATGATTTAGTTATTGTCATGAAAATTATTGTTAAAATTGAATGGAATTTCTTACCCATAATAATTGATAACTGGACTAGGATTATGCATGTTTGTAAACTACAAAGATTAAGACAATACATAATAAAAATTGATCCTTAATTTCGTTGAAGTTTTTTATGACAGGAATTAAATTGTTACAAATTTTAGAATACAATGACAAAATTGTTATATATTAAAGTTTAGGGACTAAATCATTACAAAATTGAAAATTCAATGACTAAATCGTCACAAACAAAAACTCATGAACCCGTTTGATAACCATTTCGTTTTTTGTTTTTGGTTTTTGAAAATTACACCTATAAACACTATTTTTACCTATAAGCTTCTTTGTTTTTTATGTACATCCTTTCCCATGTTTTAAAAAATCAAGCCAAATTCTGAAAACAAAAAAAAAGTAATTTTCAAAAACTTGTTTTTGTTTTTGAAATTTGGCTAGGAACTCAAATGTCTCCTTAACAAAAATGAAAACTATGGTAGGAAGATTGAGAGAAAACAAATACAATTTTCAAAAATAAAAAACAAAACACGAAATAGCGGCGTAAATTGTTACTTCCACGAAACCACAGGACCAAAAATGTTTTTTAAACTATAATGTATTAACAAAAGAAAACAGTAAAAATAATCTACCTCGCGAACAACAGTCATCAACGGAGAAACCCTAGACTTTTTAAAGTAGCTATCTATTCCTCTGCTCTGAGCTCCAGCCAGAGTTCTTCATCCCTGCACCAAAGCTTCTGCTTCGTCTTCGAGCCAAATTCTCAGCGCTATACCCATCCAACATGGTACGTTATTTCTCCCAAATCCCCACAAGTTCTATTCCTTTTCCTTGTATTACTCTATCTTTCGTACGGAATCGAGTAATACTGGTTTAGAATCCTCTTGTGAAGTAATTTTATCCACTGTGATTTTCTGTACCTGAAGCTATGCTAGATTTTCGGGAATATGTTGGGTATTCTGAAAATTGTTATTGCCTGAGTTCATGGTTTGAATTGAACTGGACGGCAATGAAGTTAATTCTTTTTCGTTCTTGGATCTGAAATATAGTTCAGATGAATGTGCTGTAATTGTATAATGATGTATCGTGATGGTTTCTCGTTTTCAATCTTCTATATATGAGGTCCAAGGGTAGAAGTACAAGTAATGTTTTCACGAATTCAGTGATGTAAACTTTCTCCTACTTGGTATCTATTTGACAGGCACCGAAGAAGGATAAGGCTCCTCCCCCGTCCTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAATTCTTTATGTGATGACTGTTTTGTTTTGAAAGTTTAGGCCTATTTAGTAACCATTTGGTTTTTTGGTCGTTGATCTTTGAAAATTAAGCTTATAAACACTACTTCCATCTATAAGTTTCTTTCTTTTGTTATCTACCTTCTTCCATGTTTTCCGTGTTTTCAAAAACCAAGTCAGGTTTTGAAGATTAACAAAATTAGTTCCCAAAAATTTGTCTTCAGAATCTGGAACTTGGAATTGTGCTAAGAATTCAAATGTTTGTTAATATGAAAACCATGGTAAGGAAATTAAGAGAAAACAAGCTTAATTTTCAAAAACCAAAAACCAAATGGTTATTAAGTTTTAGTGGGGCATAGTGATTAGGGGTCTAGTGATGATTATTCAGGTACATCTTTCATACCTGTTGCTGGTTAGTTTGAGGATTTTTTCTGTAAATCTTCTCATTGAGTGTAATTTTGATTATTTCTTTTTTGTTTGTTCAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTATTGTTCGATCAGGGAACCTATGATAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATCACTCCTTCCATCCTGTCTGACAGATTAAGGGTATGA

mRNA sequence

ATGCCAAATACACTCCTTTGGGCGTTGGAGCTACAAGTTGTGGACCTTAAGAGGAGATACCCTAATGTTCTTCTCATACGTGTTCTGGGTATTTATGCCCATTTGGATCATAATTTTATGTCTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGGGGAGGCTAGTTAGCGCAGGGTATAAGGTGGGTGTTGTCAAGCAAATCAAAATTGCTGCGATTAAGGCTCATGAGTCAAATAAGTTAGGCCCATTTGCAACATTGGAGGCAACCCAAAATTTAGGGGAGCTCCAGCCAGAGTTCTTCATCCCTGCACCAAAGCTTCTGCTTCGTCTTCGAGCCAAATTCTCAGCGCTATACCCATCCAACATGGCACCGAAGAAGGATAAGGCTCCTCCCCCGTCCTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTATTGTTCGATCAGGGAACCTATGATAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATCACTCCTTCCATCCTGTCTGACAGATTAAGGGTATGA

Coding sequence (CDS)

ATGCCAAATACACTCCTTTGGGCGTTGGAGCTACAAGTTGTGGACCTTAAGAGGAGATACCCTAATGTTCTTCTCATACGTGTTCTGGGTATTTATGCCCATTTGGATCATAATTTTATGTCTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGGGGAGGCTAGTTAGCGCAGGGTATAAGGTGGGTGTTGTCAAGCAAATCAAAATTGCTGCGATTAAGGCTCATGAGTCAAATAAGTTAGGCCCATTTGCAACATTGGAGGCAACCCAAAATTTAGGGGAGCTCCAGCCAGAGTTCTTCATCCCTGCACCAAAGCTTCTGCTTCGTCTTCGAGCCAAATTCTCAGCGCTATACCCATCCAACATGGCACCGAAGAAGGATAAGGCTCCTCCCCCGTCCTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTATTGTTCGATCAGGGAACCTATGATAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATCACTCCTTCCATCCTGTCTGACAGATTAAGGGTATGA

Protein sequence

MPNTLLWALELQVVDLKRRYPNVLLIRVLGIYAHLDHNFMSASIPTFRLNVHVGRLVSAGYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

Homology

[Close]

BLAST of Spg007342 vs. NCBI nr
Match: XP_022990471.1 (40S ribosomal protein S25-2-like [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-30
Identity = 85/136 (62.50%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 60  GYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSAL 119
           G K   + +I++ ++     N +GP     +      LQP+     P  LLR +   S L
Sbjct: 7   GPKYKPIHRIQLQSLFEALENFVGPIYAFPSILFSSSLQPK-----PLQLLRPKPWKSVL 66

Query: 120 YPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVP 179
               MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVP
Sbjct: 67  ----MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVP 126

Query: 180 KYKLITPSILSDRLRV 196
           KYKLITPSILSDR+R+
Sbjct: 127 KYKLITPSILSDRMRI 133

[Close]

BLAST of Spg007342 vs. NCBI nr
Match: KAF5443938.1 (hypothetical protein F2P56_036452, partial [Juglans regia])

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-29
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 118 ALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE 177
           +L P  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE
Sbjct: 22  SLRPGPMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE 81

Query: 178 VPKYKLITPSILSDRLRV 196
            PKYKLITPSILSDRLR+
Sbjct: 82  APKYKLITPSILSDRLRI 99

[Close]

BLAST of Spg007342 vs. NCBI nr
Match: KAF3435782.1 (hypothetical protein FNV43_RR22874 [Rhamnella rubrinervis])

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-29
Identity = 75/91 (82.42%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 106 PKLLLRLRAKFSALY-PSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV 165
           P  L  L    ++ Y P  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV
Sbjct: 504 PVFLRLLSVSLASCYRPDPMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV 563

Query: 166 LFDQGTYDKLLSEVPKYKLITPSILSDRLRV 196
           LFDQGTYDKLLSE PKYKLITPSILSDRLR+
Sbjct: 564 LFDQGTYDKLLSEAPKYKLITPSILSDRLRI 594

[Close]

BLAST of Spg007342 vs. NCBI nr
Match: TQE04382.1 (hypothetical protein C1H46_010001 [Malus baccata])

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-29
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 112 LRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTY 171
           L + F +L  + MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTY
Sbjct: 279 LSSLFPSLQSNPMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTY 338

Query: 172 DKLLSEVPKYKLITPSILSDRLRV 196
           DKLL+E PKYKLITPSILSDRLR+
Sbjct: 339 DKLLTEAPKYKLITPSILSDRLRI 362

[Close]

BLAST of Spg007342 vs. NCBI nr
Match: PPD81718.1 (hypothetical protein GOBAR_DD21343 [Gossypium barbadense])

HSP 1 Score: 138.3 bits (347), Expect = 7.2e-29
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 104 PAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM 163
           P P L+   +     L P  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM
Sbjct: 9   PPPLLVAPAKTAPPPLPPDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM 68

Query: 164 VLFDQGTYDKLLSEVPKYKLITPSILSDRLRV 196
           VLFDQ TYDKLLSE PKYKLITPSILSDR+R+
Sbjct: 69  VLFDQATYDKLLSEAPKYKLITPSILSDRMRI 100

[Close]

BLAST of Spg007342 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDR+R+
Sbjct: 61  ITPSILSDRMRI 72

[Close]

BLAST of Spg007342 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-29
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDRLR+
Sbjct: 61  ITPSILSDRLRI 72

[Close]

BLAST of Spg007342 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-29
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDRLR+
Sbjct: 61  ITPSILSDRLRI 72

[Close]

BLAST of Spg007342 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.7e-29
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDR+R+
Sbjct: 61  ITPSILSDRMRI 72

[Close]

BLAST of Spg007342 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-28
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 184 ITPSILSDRLRV 196
           ITPS+LSDRLR+
Sbjct: 61  ITPSVLSDRLRI 72

[Close]

BLAST of Spg007342 vs. ExPASy TrEMBL
Match: A0A6J1JN15 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111487324 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 85/136 (62.50%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 60  GYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSAL 119
           G K   + +I++ ++     N +GP     +      LQP+     P  LLR +   S L
Sbjct: 7   GPKYKPIHRIQLQSLFEALENFVGPIYAFPSILFSSSLQPK-----PLQLLRPKPWKSVL 66

Query: 120 YPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVP 179
               MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVP
Sbjct: 67  ----MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVP 126

Query: 180 KYKLITPSILSDRLRV 196
           KYKLITPSILSDR+R+
Sbjct: 127 KYKLITPSILSDRMRI 133

[Close]

BLAST of Spg007342 vs. ExPASy TrEMBL
Match: A0A540N013 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010001 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 112 LRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTY 171
           L + F +L  + MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTY
Sbjct: 279 LSSLFPSLQSNPMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTY 338

Query: 172 DKLLSEVPKYKLITPSILSDRLRV 196
           DKLL+E PKYKLITPSILSDRLR+
Sbjct: 339 DKLLTEAPKYKLITPSILSDRLRI 362

[Close]

BLAST of Spg007342 vs. ExPASy TrEMBL
Match: A0A540NK56 (40S ribosomal protein S25 OS=Malus baccata OX=106549 GN=C1H46_002985 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDRLRV
Sbjct: 61  ITPSILSDRLRV 72

[Close]

BLAST of Spg007342 vs. ExPASy TrEMBL
Match: A0A498IJ67 (40S ribosomal protein S25 OS=Malus domestica OX=3750 GN=DVH24_005659 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.6e-29
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDRLR+
Sbjct: 61  ITPSILSDRLRI 72

[Close]

BLAST of Spg007342 vs. ExPASy TrEMBL
Match: A0A5N5H9J7 (40S ribosomal protein S25 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_040484 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.6e-29
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDRLR+
Sbjct: 61  ITPSILSDRLRI 72

[Close]

BLAST of Spg007342 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 131.3 bits (329), Expect = 8.2e-31
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDR+R+
Sbjct: 61  ITPSILSDRMRI 72

[Close]

BLAST of Spg007342 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDRLR+
Sbjct: 61  ITPSILSDRLRI 72

[Close]

BLAST of Spg007342 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-30
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDR+R+
Sbjct: 61  ITPSILSDRMRI 72

[Close]

BLAST of Spg007342 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-29
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDR+R+
Sbjct: 61  ITPSILSDRMRI 71

[Close]

BLAST of Spg007342 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 124 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 183
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 184 ITPSILSDRLRV 196
           ITPSILSDR+R+
Sbjct: 61  ITPSILSDRMRI 71

The following BLAST results are available for this feature:

BLAST of Spg007342 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990471.1	3.8e-30	62.50	40S ribosomal protein S25-2-like [Cucurbita maxima]	[more]
KAF5443938.1	3.2e-29	92.31	hypothetical protein F2P56_036452, partial [Juglans regia]	[more]
KAF3435782.1	4.2e-29	82.42	hypothetical protein FNV43_RR22874 [Rhamnella rubrinervis]	[more]
TQE04382.1	5.5e-29	85.71	hypothetical protein C1H46_010001 [Malus baccata]	[more]
PPD81718.1	7.2e-29	79.35	hypothetical protein GOBAR_DD21343 [Gossypium barbadense]	[more]

BLAST of Spg007342 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	1.2e-29	91.67	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	1.5e-29	93.06	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9SIW5	2.6e-29	91.67	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]
Q9T029	5.7e-29	90.28	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
P46301	1.7e-28	90.28	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]

BLAST of Spg007342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN15	1.8e-30	62.50	40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111487324 PE=3 SV=1	[more]
A0A540N013	2.7e-29	85.71	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010001 PE=3 SV=1	[more]
A0A540NK56	3.5e-29	100.00	40S ribosomal protein S25 OS=Malus baccata OX=106549 GN=C1H46_002985 PE=3 SV=1	[more]
A0A498IJ67	4.6e-29	98.61	40S ribosomal protein S25 OS=Malus domestica OX=3750 GN=DVH24_005659 PE=3 SV=1	[more]
A0A5N5H9J7	4.6e-29	98.61	40S ribosomal protein S25 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8...	[more]

BLAST of Spg007342 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	8.2e-31	91.67	Ribosomal protein S25 family protein	[more]
AT4G34555.1	1.1e-30	93.06	Ribosomal protein S25 family protein	[more]
AT4G39200.1	4.1e-30	90.28	Ribosomal protein S25 family protein	[more]
AT2G21580.2	4.5e-29	90.28	Ribosomal protein S25 family protein	[more]
AT4G39200.2	2.2e-28	88.89	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007695	DNA mismatch repair protein MutS-like, N-terminal	PFAM	PF01624	MutS_I	coord: 34..76 e-value: 8.9E-7 score: 29.1
None	No IPR available	GENE3D	3.30.63.20		coord: 144..195 e-value: 1.9E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..156
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 104..195
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 131..195 e-value: 8.5E-25 score: 86.9
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 104..195
IPR016151	DNA mismatch repair protein MutS, N-terminal	GENE3D	3.40.1170.10	DNA repair protein MutS, domain I	coord: 22..87 e-value: 2.9E-9 score: 38.6
IPR016151	DNA mismatch repair protein MutS, N-terminal	SUPERFAMILY	55271	DNA repair protein MutS, domain I	coord: 9..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007342.1	Spg007342.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding
molecular_function	GO:0003735	structural constituent of ribosome