Spg000444 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCTGCAGTTTGAAGCCGGTCGCTGTACCAATGGCTACCAAACTGCTTCCACTGCGGAAGCTTTCAAGGATACTGAAGCTGCCGTCTTCTTCTTCTTCCTCTTTCAGGAAGTTTTCATATCTTTTAGAAGCTTCAAGACCTCCCCTCGATCTCTCCCATAATGTTCATCAGTTTCATCCTCCGTCTTTTTCTCGAAACTTCTGCTCCCGCCCTCTGGATTTCATCGGCGATGATCCTCGAGGCCCTGCCACCATTGATTATAGGTAATTTGTTCATTTTCTTTCTTTCCTTTTTCGATTTTTCAACCTTTCTTTAGTAGAAACTGCGTATTTCAATCGAAATTTTGAAAAAGAAGCGAAAGTTTGTAAGTTCCACCCCTTCCCCCAATTTTTTGCAATCTTCAAGCCTTTTCAATTTGGTAATTGTTTTAGGTCTGCTTGATTCGTGAATTTTTGGTCCAATGTCTCCAATTGTTTTCACTTGTCTAATTTTTTACTAAACTGAAAATGGGTTCGTGGTAATTCAACAAAGTGTTGCGAAGGTCTTACCTTTAGTTCAATTTCCCTTGATGGACAAATTACAGTTTCTATTCATGGGGTTTTCTTTGAGCGTTGGTATGATAGTTGAATGCATTTGGTAGAGAAGGGCTCAAGTGATCTTGGCTAATCTTTGCTGCAGTTCTCTGATGCAGGAGGGAGAGTTTCATAATCTAGCTGATTCCACAATACAGGGTCTGCAAGAGAAATTAGAGGTAATTGTATGTCGATGAATTGCCATTTTTTTCCCTCTCTTGATTTTATTCTTATGAATTGTATTTTTCATGTACATATTTCCGAATTGCTGCTAAAAATTTTGTTAAGTTTATTTCATTGCTTGCCAGGAATATGGCGATGATCTCCAAATTGATGGCTTTGATGTGGACTATGGGGTGAGAATGACTTAGCAGTTCTAAGATTTGATGATTTCATTTCATATGTATACATAATGCTTAATTTTATCCAATTTTCATTACGCAGAATGAGGTACTGACCTTAAGGCTCGGCGATCTCGGCACCTACGTCTTGAACAAACAAACGCCAAACAGACAACTTTGGCTTTCTTCCCCTGTGAGGTATCATGCTTCCCTAGTGACTTATTTTCCCGTTGAATGATTAGAATGTCAATCTACAATGTTTATCCTTTCCATTTGTTTCAAAGATCATTTCAGACCTTGTACCTGTTTCCATTTCATGACAAAGTTCAGCACTTGTCTTTTCAAAGTCTTTAGTAATAATGGAACTTGTTTCTGTTCATATAACAACATTTACCCATTCATAAGAGCATGCCTAATATCCCTAGATGTCTTTAACTTATATAAGAGCAGAAAAGAAGGAATGAGACTAGTTTTAATTTGGTCCTGAGAGAACGAGGAACATATATTTAGGCATTGTACACAACTTTGTGACAACCCAGGTTATGTTCTTCCTTGCAGTGGTCCATCGAGGTTTGATTGGGATCAGAACTCACAGGCTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGGCTCTTAGAAACTGAATTGGCGCAGCTCTGTGGTGAGCCAATTGACCTTTCTTGAGCCCTTTAAATAACTTGGACATGGTGAGGTTATTCTGAAGCATTTAGACGCATATTTATGCAGCTCTTTCAGTTTGGTTTACCTTCTTAACTATCCCAGAGCCCACATCTTTTTCTCGTCTTCATTCTACCTGTTGCATTATATGCAATAATATGTTCTGATTCTATTGCTTCGAGTATAACTATTCATGATTAACTTGAGCTATGCTCAACTGACCAAGATATAATTAATCTTTTAAAAAGCGAAAGATATGACTTCCC ATGCTCTGCAGTTTGAAGCCGGTCGCTGTACCAATGGCTACCAAACTGCTTCCACTGCGGAAGCTTTCAAGGATACTGAAGCTGCCGTCTTCTTCTTCTTCCTCTTTCAGGAAGTTTTCATATCTTTTAGAAGCTTCAAGACCTCCCCTCGATCTCTCCCATAATGTTCATCAGTTTCATCCTCCGTCTTTTTCTCGAAACTTCTGCTCCCGCCCTCTGGATTTCATCGGCGATGATCCTCGAGGCCCTGCCACCATTGATTATAGTTCTCTGATGCAGGAGGGAGAGTTTCATAATCTAGCTGATTCCACAATACAGGGTCTGCAAGAGAAATTAGAGGAATATGGCGATGATCTCCAAATTGATGGCTTTGATGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCGATCTCGGCACCTACGTCTTGAACAAACAAACGCCAAACAGACAACTTTGGCTTTCTTCCCCTGTGAGTGGTCCATCGAGGTTTGATTGGGATCAGAACTCACAGGCTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGGCTCTTAGAAACTGAATTGGCGCAGCTCTGTGGTGAGCCAATTGACCTTTCTTGA ATGCTCTGCAGTTTGAAGCCGGTCGCTGTACCAATGGCTACCAAACTGCTTCCACTGCGGAAGCTTTCAAGGATACTGAAGCTGCCGTCTTCTTCTTCTTCCTCTTTCAGGAAGTTTTCATATCTTTTAGAAGCTTCAAGACCTCCCCTCGATCTCTCCCATAATGTTCATCAGTTTCATCCTCCGTCTTTTTCTCGAAACTTCTGCTCCCGCCCTCTGGATTTCATCGGCGATGATCCTCGAGGCCCTGCCACCATTGATTATAGTTCTCTGATGCAGGAGGGAGAGTTTCATAATCTAGCTGATTCCACAATACAGGGTCTGCAAGAGAAATTAGAGGAATATGGCGATGATCTCCAAATTGATGGCTTTGATGTGGACTATGGGAATGAGGTACTGACCTTAAGGCTCGGCGATCTCGGCACCTACGTCTTGAACAAACAAACGCCAAACAGACAACTTTGGCTTTCTTCCCCTGTGAGTGGTCCATCGAGGTTTGATTGGGATCAGAACTCACAGGCTTGGATTTATAGGCGGAACAAAGCAAACCTGTTGAGGCTCTTAGAAACTGAATTGGCGCAGCTCTGTGGTGAGCCAATTGACCTTTCTTGA MLCSLKPVAVPMATKLLPLRKLSRILKLPSSSSSSFRKFSYLLEASRPPLDLSHNVHQFHPPSFSRNFCSRPLDFIGDDPRGPATIDYSSLMQEGEFHNLADSTIQGLQEKLEEYGDDLQIDGFDVDYGNEVLTLRLGDLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDQNSQAWIYRRNKANLLRLLETELAQLCGEPIDLS Homology
BLAST of Spg000444 vs. NCBI nr
Match: XP_022971111.1 (frataxin, mitochondrial [Cucurbita maxima]) HSP 1 Score: 357.8 bits (917), Expect = 6.0e-95 Identity = 177/196 (90.31%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Spg000444 vs. NCBI nr
Match: KAG6604827.1 (Frataxin, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94 Identity = 176/198 (88.89%), Postives = 186/198 (93.94%), Query Frame = 0
BLAST of Spg000444 vs. NCBI nr
Match: XP_022947402.1 (frataxin, mitochondrial [Cucurbita moschata]) HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93 Identity = 175/196 (89.29%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Spg000444 vs. NCBI nr
Match: XP_023533562.1 (frataxin, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 352.8 bits (904), Expect = 1.9e-93 Identity = 174/196 (88.78%), Postives = 184/196 (93.88%), Query Frame = 0
BLAST of Spg000444 vs. NCBI nr
Match: XP_022140770.1 (frataxin, mitochondrial [Momordica charantia]) HSP 1 Score: 349.4 bits (895), Expect = 2.1e-92 Identity = 172/195 (88.21%), Postives = 183/195 (93.85%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy Swiss-Prot
Match: Q9ZR07 (Frataxin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FH PE=1 SV=2) HSP 1 Score: 206.1 bits (523), Expect = 3.8e-52 Identity = 109/189 (57.67%), Postives = 135/189 (71.43%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy Swiss-Prot
Match: O35943 (Frataxin, mitochondrial OS=Mus musculus OX=10090 GN=Fxn PE=1 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22 Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy Swiss-Prot
Match: Q05B87 (Frataxin, mitochondrial OS=Bos taurus OX=9913 GN=FXN PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.2e-21 Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy Swiss-Prot
Match: Q16595 (Frataxin, mitochondrial OS=Homo sapiens OX=9606 GN=FXN PE=1 SV=2) HSP 1 Score: 103.2 bits (256), Expect = 3.5e-21 Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy Swiss-Prot
Match: O74831 (Frataxin homolog, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1183.03c PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 6.6e-20 Identity = 42/116 (36.21%), Postives = 72/116 (62.07%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy TrEMBL
Match: A0A6J1I2E7 (Ferroxidase OS=Cucurbita maxima OX=3661 GN=LOC111469879 PE=3 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 2.9e-95 Identity = 177/196 (90.31%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy TrEMBL
Match: A0A6J1G6C8 (Ferroxidase OS=Cucurbita moschata OX=3662 GN=LOC111451278 PE=3 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 7.2e-94 Identity = 175/196 (89.29%), Postives = 185/196 (94.39%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy TrEMBL
Match: A0A6J1CG34 (Ferroxidase OS=Momordica charantia OX=3673 GN=LOC111011350 PE=3 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92 Identity = 172/195 (88.21%), Postives = 183/195 (93.85%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy TrEMBL
Match: A0A0A0KAC6 (Ferroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G121430 PE=3 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 4.8e-90 Identity = 169/200 (84.50%), Postives = 180/200 (90.00%), Query Frame = 0
BLAST of Spg000444 vs. ExPASy TrEMBL
Match: A0A1S3BJ48 (Ferroxidase OS=Cucumis melo OX=3656 GN=LOC103490464 PE=3 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 1.4e-89 Identity = 166/192 (86.46%), Postives = 178/192 (92.71%), Query Frame = 0
BLAST of Spg000444 vs. TAIR 10
Match: AT4G03240.1 (frataxin homolog ) HSP 1 Score: 206.1 bits (523), Expect = 2.7e-53 Identity = 109/189 (57.67%), Postives = 135/189 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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