HG10009388 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGCCACTAATTCCAAGATTACTACCGCTGCTCCACGACTCTTATTATTATTTCCTCACAATCATCTCTTTCCCTCCGCTATTTTCCGCCTCCGGTACTTTTTTTTTTTTTTTTCCTTTTAAATCTTCTTTGGTTATTAATGTGATGTTGATCTCTAGATGTATATTTTGATTCTCCAACTTTTGAGAGTTATTTTGTTTCTATTAAGAGTTATATCGTAGATTTGATTTAGCCCTGACGTTTTATTCGAACTTCACTACAAAGTTTTTACTCTTTGTCAACGGAAACATCGACAAAGGATTTGTCTATGTTTTTATATGTGGGCAAAAAATGTGGCGGAAGTTAGTTGAAGTAATTTTTGCCGATACATTTGATGTTGTGTTGGTAGAACTACTGACGCAAATAAAAAGCGTGGGCAGAATGTCATTTTTGCCCACGCAAGCTATAAAAACTTCTTTCTTTGTCGATGCAACTATGACTATGGGTAGAAGGGTAATTTCTGCCCACGAATGATACGTAGACAGAATAAACTTTGGTGGAACTATTGTTTTTATCTAGGTGTAATACATTGACAGAAAGAAGATGTGGACAGGAGTTTATTTACTGTCAAGAGTTATTTTGAGTTTGACTCAAAGTTTAATGTTGTGTTGTCTATAAAAATGTTGAGATTTTAATTTTATATAGATATGTTAAAAAAAATAAAGACTTTATTAAAATGTTTATGAAAATATACCATGAAAATGTTAATCTTGAAAGAAAAAAAGTTAACTTAGTCCATATGCTTTAGATTTTGTTCAATTTTAGTCATTATATTTTCAATAAATTATAAATTTAGTCTATGGATGCATTTTTTTAAAGAAAATTTGTTAAATAATAATAATAAATTTTAGGTAAAAAATTACAAAATATGTGAATATATGTTTTTAAAATTTAAAGTAAAAATGTTAATATATGATAAAAAATTTTGAAGAAAATAAACAAAAATCTAGTAATAGTATCTAAATTTGAGATTTATTGAAAATATATAGAAAAAAATTAGGCATTTGAAATTACATGATTAGAATCCAACAAATTTCAACCAAAATGGTATTATAACAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTTGATCTAACAAATAAGCACTTTACCTTTTTGAGAATAAAAACATTTTTTTGTACTCTCAAAAAGATTATTAGTTTTTTCAGATACTGATATTTTGTTTTGCACTATGTATGCGTATATATGTTGATTTTGTTTTCATCCATTTTGATATTTATATTTTGTCTTATTTTTGGTGCTTCTTTTTTTTTTTACACGTTTTTTTTTTTTTAAAAAAAAAAAAGAATGGGCAACCAATTCTAACACAGTGGGTAAAAAACTTAAAAGGAAATAAAAAAAAAACTTTTAATACAGTGTTTTTTAGAAAACTTTTAATACAGTCTATCATGTGTGATGTTGCGCTATTTATTTATTTATTTAGGAAAAATTTAATAGTAAATTTTAACAGGGAACATAGAAACAAAACTTCGTGAAAATTTCACACTGAGATAATTTTCTGATATTTTATTGGAAAATTTGTCCTTATATTCGGCTAAACAATCATTTGTACTGATAGTTTATTTGAAATAAAAGGTTGCCACTGGTTAATTACCATTTTTTTTATCTAATGAATCTTTAAATTTAAAATATCTTTTATTTTGTTATTTCGTTTTGTGTACTTCAATGAATGTGTACATTATTAAAGGTTTAGTTGCCTATTATTTAAAAAAAAAAAAAAAAAGTTTAGCTGCCTCATTCATTTTTACTTGATTCTTATTTTCTCGAACAACATGTAAGAGTGGAATTTGATCAATGATGATAATATATATTATAGTTTAACTCACTTATTGTATATTTAAATAAAGAAAAAAAAATACATATATTATAGTCTAACTCACTTATTTGTATATTTAATTAAGAAAAATTTGTACTCCATAGCTTTTTTTGCTTCATCTTATTATTAATTTTTGCGTGGTTATTTAAAATCATAATCAAATTTAGTGGACACATTACTTTTTTTTCTATAAAGTGGACACATTAATTAATCTATAATATATTTTAATCACTTATTAGTTTAGCTGGTTCGTTTTTTTTCTTTTCCAATTTATAGGATGAGGGAATTGAATCACAAATTTTGAAATTGATAGTACAAACACTATGTCAATTGAGTTATGTTCACTTTTTACACTTATTTGATGCTAATCATTGATTCATTACATATTTTCAAAAGTTTAAGTTGAGTTGTGTGTGTCATTTATTATTGTAATTATTTTGTAAAGAGAGGATGATACTTTTAATTAATTCTTCTAATTATTATTAGAAAAAAAAAACTTGGGTGGAGTCTAGGTTGCACCCATCAGCCCAAATAACATCCAACAAAAATCTATCATGTGATAATTTTTTTATAAAAAAATGCATTACTTTTTTTCTACTATGTATAGAAAATGGAAGACATGAGATTAGATGCAACCTAGACTGCACCTAATATTGCCCTTCTTATTATTATTATACTCAATTATTATAATATTGATGCAATCGCAAAAATTTCCTATATACACTACATAAATATGAATAAAATTTTGTACTCCCTCTATTTATTACGCATCATATTTTAAAGAAAGAATAGAATGAGATTCACTAATATTAATATAGAGTTCACTGATATTTATAAATATAAACCTATATAATATAAAGAAACAGAATATGATTCTTTCGCAATACTAAAAATTTTCTCGTTAACACTTATTTTGTTGGTTGGTTTTAGGGCAAGTCACTGGTCAGCATATGAGAAGAACTCAGAGGAGGAAATATGGCCCACAGTAGTACCAAACCACGTGATCCATCCTGATTTATCAGAAAACTACTGGGCCCCACATCCTGAAACAGGAGTTTTTGGGCCACCAATAGCCCACCACCATACTTCTGTAGTTCCGAACGACACGTCGGCTGGTTGTAAGGAGGGTTCAGTTCTGGACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTTGAGAAACCACACTCTCTCTAA ATGGCCGCCACTAATTCCAAGATTACTACCGCTGCTCCACGACTCTTATTATTATTTCCTCACAATCATCTCTTTCCCTCCGCTATTTTCCGCCTCCGGGCAAGTCACTGGTCAGCATATGAGAAGAACTCAGAGGAGGAAATATGGCCCACAGTAGTACCAAACCACGTGATCCATCCTGATTTATCAGAAAACTACTGGGCCCCACATCCTGAAACAGGAGTTTTTGGGCCACCAATAGCCCACCACCATACTTCTGTAGTTCCGAACGACACGTCGGCTGGTTGTAAGGAGGGTTCAGTTCTGGACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTTGAGAAACCACACTCTCTCTAA ATGGCCGCCACTAATTCCAAGATTACTACCGCTGCTCCACGACTCTTATTATTATTTCCTCACAATCATCTCTTTCCCTCCGCTATTTTCCGCCTCCGGGCAAGTCACTGGTCAGCATATGAGAAGAACTCAGAGGAGGAAATATGGCCCACAGTAGTACCAAACCACGTGATCCATCCTGATTTATCAGAAAACTACTGGGCCCCACATCCTGAAACAGGAGTTTTTGGGCCACCAATAGCCCACCACCATACTTCTGTAGTTCCGAACGACACGTCGGCTGGTTGTAAGGAGGGTTCAGTTCTGGACCTCAAGGCTTGGTTCCGACATAACGGCCTCGAAGACCTTGAGAAACCACACTCTCTCTAA MAATNSKITTAAPRLLLLFPHNHLFPSAIFRLRASHWSAYEKNSEEEIWPTVVPNHVIHPDLSENYWAPHPETGVFGPPIAHHHTSVVPNDTSAGCKEGSVLDLKAWFRHNGLEDLEKPHSL Homology
BLAST of HG10009388 vs. NCBI nr
Match: XP_038875585.1 (late embryogenesis abundant protein At5g17165-like [Benincasa hispida]) HSP 1 Score: 196.1 bits (497), Expect = 1.8e-46 Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 0
BLAST of HG10009388 vs. NCBI nr
Match: XP_004143665.1 (late embryogenesis abundant protein At5g17165 [Cucumis sativus]) HSP 1 Score: 191.8 bits (486), Expect = 3.4e-45 Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 0
BLAST of HG10009388 vs. NCBI nr
Match: XP_016903720.1 (PREDICTED: uncharacterized protein LOC103504694 [Cucumis melo]) HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43 Identity = 90/125 (72.00%), Postives = 100/125 (80.00%), Query Frame = 0
BLAST of HG10009388 vs. NCBI nr
Match: KAE8647930.1 (hypothetical protein Csa_000491 [Cucumis sativus]) HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43 Identity = 89/129 (68.99%), Postives = 101/129 (78.29%), Query Frame = 0
BLAST of HG10009388 vs. NCBI nr
Match: KAA0055104.1 (uncharacterized protein E6C27_scaffold231G00300 [Cucumis melo var. makuwa]) HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41 Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 0
BLAST of HG10009388 vs. ExPASy Swiss-Prot
Match: F4KFM8 (Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN=At5g17165 PE=3 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18 Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of HG10009388 vs. ExPASy TrEMBL
Match: A0A0A0KRJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168830 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45 Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 0
BLAST of HG10009388 vs. ExPASy TrEMBL
Match: A0A1S4E6U6 (uncharacterized protein LOC103504694 OS=Cucumis melo OX=3656 GN=LOC103504694 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 7.0e-44 Identity = 90/125 (72.00%), Postives = 100/125 (80.00%), Query Frame = 0
BLAST of HG10009388 vs. ExPASy TrEMBL
Match: A0A5A7UIY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00300 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.5e-42 Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 0
BLAST of HG10009388 vs. ExPASy TrEMBL
Match: A0A6J1K564 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 GN=LOC111490853 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 4.2e-33 Identity = 80/124 (64.52%), Postives = 93/124 (75.00%), Query Frame = 0
BLAST of HG10009388 vs. ExPASy TrEMBL
Match: A0A6J1H0D3 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita moschata OX=3662 GN=LOC111459285 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29 Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of HG10009388 vs. TAIR 10
Match: AT5G17165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19 Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of HG10009388 vs. TAIR 10
Match: AT3G03150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 84.0 bits (206), Expect = 9.4e-17 Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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