HG10014613 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014613
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	AP complex subunit sigma
Location	Chr02: 16062167 .. 16067612 (+)
RNA-Seq Expression	HG10014613
Synteny	HG10014613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATCGAACATGAAACTCAACTTCAACAGCGAATGCGACCTGCGACAAAGACGGAGCAGACGATGGTGAGGAGAAACCGACGACCAACGACAACTGAGAGAGAAAAGCGTGAATGCAGAAAACGACGACTTGAGGGAGAGATGCGATTATGCGAATGAAATTGATAGAAGAGTTGTGGAACCCTAATAGCATTTAAGGTGGGTTGATCGAACCGACGAACCAAACCAAATCATATCGATTTGGTTTGGTTTGGTTTTGGTTGAACTTAAACAGAAACCTTAATCCAACTGAACCAGTTTGAACCAATTCGATTCGATTTGCCGGTTTGGTTCAATTTTTTTCACTCACATTAAATGTTTTTTTTAGAAAAATGAGCAAAACTATTTACAATATAGAAAAATTTCACTGTCTATGCGATAGACTTTGATAGCTTGAACTTGCAGTCTTTGGTCGCTTGAACGATAGGCTGCAAGTCTATCTTGGTCTATCGCATAGACTTTTAGAAGTCTATCGCGGTTTAAGTGAGATTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTCCTATCAATTTCTTCTTTTTTGGGAAATGGTTAGAAATAATCCCAAAAGGTTTTTAATCTTTCAAAATTAGCACCCTTTTTAGCAATTCGTTATAATAGTTTTTCTAGATCCTAAGATTCGAATAAAAATGTAATATTTTTTTTTTTGTGATTTTATTTTGCTTTCTTGGTGGAATCTCGGTTGGGAATATATGTAATCTTTTCCAAATGTTACGTAATCTTTTTAATATTCTTCAAATCCCATATTCATAATCCAATTTAGTACACCTACCATTCCAATTAGAGATTCTAAATTTCCAAAACTTCAATATCTCGACAGCTTCAACAACCTCAATGCAATCTTCAATTTTTCAAAAAATTTGTAATTATTCGGATCAAGAATTGAAGCAGATAGAAACAAAGCAATCTAATAGCACCAGTGCATATATAATATTGATGCAATTGGGTTATGGGTAGGGAATGATGCAATTTCTCTATTCATAAACAACCAAGAAGAATGATGCAATTTCAACATGTAATATTGATTCTCTTGGCCAATCTCGATTTTTGTTTTGACCAAAGATCTAAAAAAATTGATGGTTTGGATGTGAGTAGAAAAGATTTAAATTTTAATTTGAATCTCAAGATCGATCACGACCAGGAAAGACTTAGAAAACTATTATAAGGAATTACAAACAAAAAAGTGCTAATTATGAAATTGGACATTATTTAAAATTTTCCTAGATTTAATTGCACAACCAACCTATTTTAAAGGCAAAAAATGACAAATGACCCCGTTTTTTAAAAAATGTCAAATGACAGTTTGTTAATGTAACGAACAAGGAAAGTTACAAATTTGCCCTTTCTTTTATCCTCTTTCCTTCTTGGCACGATTTTCTTCTTCTTCTCATGCGAAATTCTACGGCTCCGATATGATTTTGTTCTTCTCCGACGAAGCTCTCCTTCTCCACGACCCTGGCTCTGATCAATGATACAGGACCAGCTTCGCCTTGTAGCTTCGACCTACGATGTACGAGAGAACAAAAGAGAGCAAAAGCTTCTCTTGAGACCCTGCAGCTCTGACCAATGCTGCGGGACCAAAGTGAGAAAGAGAGAGAGAGGACGTGATCTGACGAAGAGAGAGTAAATGATGAAAGGAAGCGAGAGCCAGACTTTTTCGCATGGATGAGTTCATTTTAGTAATTTCACCTCAACTTGACTTTAGAAGGTAAAAAAAAACTTGTTTTAAAAAGGGGAGGTAAACTATTTACACAAAATAACAAAATTTTTAAATAGTTGTGATAGACACTGATAGAAATCTATCAGGATCTATCCGTAATAGAAATGATAGACGTCTATCACCTGATAAAAGTTTATCCATATCTATCCGTATTGTTTTTTTGCTATTTTATGTAAATGGTTTGACATTTTTTTTATTTGTGAAAATTTTCCTTTTAAAAAAGCAAGCAATTTTTCATCTCTCCCCCATTTTTTGTAATCAAACCGCCGGACCCAATTTCTCCATAAGTTTAATCTATCAAATAATCCCAAACTCCAGTGTCATTTTCTCTTTGCCTCATCCTCACGGCGTCGACCCCCTCCCCTCTCTCTGCTTAGTTTTTCCCCGGCGGTGACCAGACTGCAAAGACCCACGAATCAGCGGTGGTTGGACGGTTCCGGCGTTACCCACGAAATCCAATCCAAGTGACTGTGTACTCTTCGTGGGTGAACTCTTGGACGCGCGTCTACTTCTGCAACGATGTCTGGCGGCACGTGCGAATGCTACACCAGCAGCGGTTACCGGCGACTCCGTGAGCACGACATTCAACTTCTGTTGTAGATGACCTTGCGTGCCACGGCGGTGTGGTTCTCAACGGTGGCGCGATCAAAGACCTATGAACTAGCGGTGATGTTGACATTGGAGTAAGTTTTCGGTGGTTATCCACACTCCGATTTTCATTAAATCGGATTACCCACTACGTGTAAAGTTCAGATCTACAAGTTTAGAAACTTTCGGACAGACACCGGTGAAGATCGAAGCCTTATTGGTTAGGTTCACGAGGTATTAACGTGTTTTGAACCCTTTCCGACTCGATTAAATTATCTAATATCAGTCTTTAATATGTAGAACTAGCATTGGACTAATGCAGAATGGTCGATTAAGGTCTGTTGATTTTTGGTAAAAATATCTCTCATGAACACTCTCTCCGTTTGGATTAAGGTTTCGGACTATAAACAATGTCTTTATTCTTTAGCCTTGTATTAATGATGTTTGTTATGGATTCTATTTTGGATTAATTTCTGTAGGTTTTTGATCGAGGTAATTACTTTTCACAAATGTCTGAAAGTATCTTTGTATGATTTGAAATTGAATGAAATTGTTTGTATTGAAGTGTTTTGATCGATTTCAAATTGAAATAAATCTGTTTTGGTTTTGTTACTTTTGAAAAAGTATTATAAAGTTTGTATTTACTGATTTGATGTGTTTTTATGAAAAATTATACTTGAAACTATGTGTTTTGTTTTGAATGTCTTTGAAAGAATTTTGAACTTTTTTCTTTTTTTTGGGGGGGGGGGGGGATTGTTTGCTTATTATGCAGTAGCCAGACAGTAAATTTTTTAAATTTATTTGTGGGAAGACACCTTATAATGGTTTGGCATTCTTTTGGAATGAAGATTTAGGTGTGCGTTGCACTTGTATGGCCCCACATAGTAATTGCATTGAATGTTCCTTAGAACTCAAGAATATAGTTGTAAAGTAAGGTCGTTGCATTGAATGTTCTCTAATCGACATATTGGATTGAATGAATGGTTGATTGGTGTTACTGTTGGGTAACCACATATGTCTTGGCTACTCTAATTATGCATCTTTCTCACTATGATAAATGAAAGTTCTGTTCGATTGAAAGTTGAAAGTTCTGTTTTATGAAAAGTATCGATTGATGGAAAGTTCTATTCAAAATCCATTTGAAAGTGTTGTTTTACTAGAAGTATTGAAACTTTTGTTTTATTGAAGATTTTTCGGAAGTTGTGAAAGCTTACTTGGAAGTTTTAGTTTGAAATGTTTGGTTTTAAAAGCTTAATTGATAAAAAGATTTTGGTTTTGAAAGCACCATTTGTAACAAAGTTTTAACTGAAAATTTTGCAAGAGTTTGTATGTTTAGTTGTTTTGAAAGAAAAATGGATTTCAAAATTTGATATGCAAATTGCTTATTGAGTACTGTACTCATTTATGCTTTTCTAAAATGTTTTCAAATGATAGTTTCGAGAGTAGTAAAGTTTGAAGTTCTCGCACAAGACATAGATTTTTGTAGGATTTGATAGTTTACCTCAAAAATCATTTGTAAGGGATTGTTTCTGCTGAACTATGTAAGTTGTTACAATTTCTAATTGTTATTTTTTATGCATTATTGTTTTATAATAGTTGTATTGAAAGGTACAGGCTTCGACATGAAAAATTCTTAGATCCAGACGGTAAAAATTGTGCGATTGAACGCTGCAATCAACTCGAGTGATCGGGGTTCGTACCACCATGATACGAGCGGTGATAGTGATGAATACTCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGGTTCCTTTCTGGGATTTATGTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACTATTTGCAGCATTTCTATCAAATGATCTGTCTGATGATGAATTCTTGAATTCAGCCTGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGGGGTTGGCAATTCTATATTTTTAATTAGATTTTTGCAAATTACTATAAGGATCAGTGGTATTTCCAATATTGCAACTATGGTTTCTTTAACCTGTATTTCTATTTTGATTTCTTTTGATTCCTGTTTTGGTACAGTACTTTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTCTGGTAAGATTTCCTTGTCCAACAATTTCCTTTAGTACCGTGTTTAGCATGTACTTGAATTGATAATTCTTTGAGAAGCTAGAAATTTGACAAAAATGAATGTTGGTTGGCAACTTGGCATTGTTCAACCAGTTGAGTGCAATTATAGAGTGGCCTAGCCTAGCTGATTAGTTGGGCTAGCTAATGCTAATGAGTAATGAACCTTGGGGATTAACCTTTTCTTTCTGCTGCAGGACTCTCGTCTTGTATACAAACACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGTACTTTCAATATTATATGTGACGGATTAGTGATCACTATAGTATTTTTTATGAACGACCTGACTTGAAGAAGATCTGTTCTATGGGTTGTACAACAGTGTCATTGAGTTCTAACGAATATTTTTTACGCAAATATTATTTACATGCTTACAAGGCATCTACGAGGACTTTAGTACCCCTTGGTACCTCAAGTTTTAAACCAGATGGTATCTGGTTATGTTTTGGCATTCTTTAGTACAATAACCAGAAGTGCGAGGAATGATGAAACGTGTGGCCTTAAAATTCTCTTACTAAAAAGACCTGAATAGTTGCATAACATAACTCAAAGAGAATTGAACCAAGTAGAAGTTGAATCATCAAAACTTCTTATTTGAATGTTAGATCTTCATAAGTTTGTTGCTATATACTTTTAGGGATGTAGTGCAATGATCTGATTAGTTTTGTTGTCTTGTATTATTCCCTTGATTGATGGCATGATTAGGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGA

mRNA sequence

ATGAACATCGAACATGAAACTCAACTTCAACAGCGAATGCGACCTGCGACAAAGACGGAGCAGACGATGCCTGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGGGTACTTTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTCTGGACTCTCGTCTTGTATACAAACACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGA

Coding sequence (CDS)

ATGAACATCGAACATGAAACTCAACTTCAACAGCGAATGCGACCTGCGACAAAGACGGAGCAGACGATGCCTGTAGAGAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGGGTACTTTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTCTGGACTCTCGTCTTGTATACAAACACTTTGCCACCCTTTATTTCGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTTGACTTAGTGTTCAACTACAGCAAGGTCAGCTCTCTCTCTTGA

Protein sequence

MNIEHETQLQQRMRPATKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSLS

Homology

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BLAST of HG10014613 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           P+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFVLVFNSSENEL
Sbjct: 24  PIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSRLVYKHFATLYFVLVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ S+
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFNYSKMHSI 118

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BLAST of HG10014613 vs. NCBI nr
Match: XP_038893159.1 (AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893162.1 AP-3 complex subunit sigma [Benincasa hispida] >XP_038893163.1 AP-3 complex subunit sigma [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFG DSRLVYKHFATLYFVLVFNSSENEL
Sbjct: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVLVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ ++
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFNYSKMHTI 118

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BLAST of HG10014613 vs. NCBI nr
Match: XP_011655957.1 (AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741535.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741536.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741537.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741538.1 AP-3 complex subunit sigma [Cucumis sativus] >XP_031741539.1 AP-3 complex subunit sigma [Cucumis sativus] >KAE8648882.1 hypothetical protein Csa_008325 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-39
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           P+EKQQELIRSVYGVLCSRAENVSNFVE ESIFGLDS LVYKHFATLYFVLVFNSSENEL
Sbjct: 24  PIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ ++
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFNYSKMHTI 118

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BLAST of HG10014613 vs. NCBI nr
Match: XP_023543862.1 (AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 23  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENE 82
           +PVEKQQELIRSV+GVLCSRAENVSNFVEAESIFG DSRLVYKHFATLYFV VFNSSENE
Sbjct: 23  LPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENE 82

Query: 83  LAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           LAMLDLIQ     VFVETLDKCFKNVCELDLVFNY+K+ S+
Sbjct: 83  LAMLDLIQ-----VFVETLDKCFKNVCELDLVFNYTKMHSI 118

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BLAST of HG10014613 vs. NCBI nr
Match: KAG6603975.1 (AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034147.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           PVEKQQELIRSV+GVLCSRAENVSNFVEAESIFG DSRLVYKHFATLYFV VFNSSENEL
Sbjct: 24  PVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVFNY+K+ S+
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFNYTKMHSI 118

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BLAST of HG10014613 vs. ExPASy Swiss-Prot
Match: Q8VZ37 (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-36
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 23  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENE 82
           +PVEKQQELIR V+ VLCSR ENVSNF+E ES+FG DSRLVYKH+ATLYFVLVF+ SENE
Sbjct: 23  LPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENE 82

Query: 83  LAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           LAMLDLIQ     V VETLDKCF NVCELD+VFNYSK+ ++
Sbjct: 83  LAMLDLIQ-----VLVETLDKCFSNVCELDIVFNYSKMHAV 118

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BLAST of HG10014613 vs. ExPASy Swiss-Prot
Match: Q1JQA3 (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 21  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSS 80
           Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SS
Sbjct: 21  QRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSS 80

Query: 81  ENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           E+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  KV
Sbjct: 81  ESELGILDLIQ-----VFVETLDKCFENVCELDLIFHMDKV 116

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BLAST of HG10014613 vs. ExPASy Swiss-Prot
Match: P59780 (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 21  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSS 80
           Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SS
Sbjct: 21  QRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSS 80

Query: 81  ENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           E+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  KV
Sbjct: 81  ESELGILDLIQ-----VFVETLDKCFENVCELDLIFHMDKV 116

[Close]

BLAST of HG10014613 vs. ExPASy Swiss-Prot
Match: Q8BSZ2 (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 21  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSS 80
           Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SS
Sbjct: 21  QRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSS 80

Query: 81  ENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           E+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  KV
Sbjct: 81  ESELGILDLIQ-----VFVETLDKCFENVCELDLIFHMDKV 116

[Close]

BLAST of HG10014613 vs. ExPASy Swiss-Prot
Match: Q5RDP9 (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 21  QTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIF-GLDSRLVYKHFATLYFVLVFNSS 80
           Q  P E QQ+++R  + ++  R +N+ NF+E  S+  G D +L+Y+H+ATLYFV   +SS
Sbjct: 21  QRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSS 80

Query: 81  ENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           E+EL +LDLIQ     VFVETLDKCF+NVCELDL+F+  KV
Sbjct: 81  ESELGILDLIQ-----VFVETLDKCFENVCELDLIFHMDKV 116

[Close]

BLAST of HG10014613 vs. ExPASy TrEMBL
Match: A0A1S3BT37 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.2e-40
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           P+EKQQELIRSVYGVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFVLVFNSSENEL
Sbjct: 24  PIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSRLVYKHFATLYFVLVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVFNYSK+ S+
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFNYSKMHSI 118

[Close]

BLAST of HG10014613 vs. ExPASy TrEMBL
Match: A0A6J1IUE1 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           PVEKQQELIRSV+GVLCSRAENVSNFVEAESIFG DSR+VYKHFATLYFV VFNSSENEL
Sbjct: 24  PVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDSRVVYKHFATLYFVFVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVFNY+K+ S+
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFNYTKMHSI 118

[Close]

BLAST of HG10014613 vs. ExPASy TrEMBL
Match: A0A6J1GFL2 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.9e-38
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           PVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFV VFNSSENEL
Sbjct: 24  PVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           AMLDLIQ     VFVETLDKCFKNVCELDLVF+Y+K+ S+
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFHYTKMHSI 118

[Close]

BLAST of HG10014613 vs. ExPASy TrEMBL
Match: A0A6J1GFN8 (AP-3 complex subunit sigma-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 24  PVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENEL 83
           PVEKQQELIRSV+GVLCSRAEN+SNFVEAESIFG DSRLVYKHFATLYFV VFNSSENEL
Sbjct: 24  PVEKQQELIRSVHGVLCSRAENLSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENEL 83

Query: 84  AMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           AMLDLIQ     VFVETLDKCFKNVCELDLVF+Y+KV
Sbjct: 84  AMLDLIQ-----VFVETLDKCFKNVCELDLVFHYTKV 115

[Close]

BLAST of HG10014613 vs. ExPASy TrEMBL
Match: A0A1U8N8R1 (AP complex subunit sigma OS=Gossypium hirsutum OX=3635 GN=LOC107945750 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 18  KTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFN 77
           K  + + VEKQQELIR V+ VLCSRAENVSNF++AESIFGLDSRLVYKHFATLYFV VF+
Sbjct: 18  KFYEYLSVEKQQELIRGVFSVLCSRAENVSNFIDAESIFGLDSRLVYKHFATLYFVFVFD 77

Query: 78  SSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           SSENELA+LDLIQ    SVFVETLDKCF+NVCELD+VFNYSK+ ++
Sbjct: 78  SSENELAVLDLIQDVLPSVFVETLDKCFQNVCELDIVFNYSKIHTI 123

[Close]

BLAST of HG10014613 vs. TAIR 10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-37
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 23  MPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVFNSSENE 82
           +PVEKQQELIR V+ VLCSR ENVSNF+E ES+FG DSRLVYKH+ATLYFVLVF+ SENE
Sbjct: 23  LPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENE 82

Query: 83  LAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKVSSL 124
           LAMLDLIQ     V VETLDKCF NVCELD+VFNYSK+ ++
Sbjct: 83  LAMLDLIQ-----VLVETLDKCFSNVCELDIVFNYSKMHAV 118

[Close]

BLAST of HG10014613 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 17  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVF 76
           TK       +++ ++IR + GV+ +R   + NFVE         ++VYK +A+LYF +  
Sbjct: 17  TKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY-----KVVYKRYASLYFCMCI 76

Query: 77  NSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           +  +NEL +L++I       +VE LD+ F +VCELDL+FN+ KV
Sbjct: 77  DQEDNELEVLEIIHH-----YVEILDRYFGSVCELDLIFNFHKV 110

[Close]

BLAST of HG10014613 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 17  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVF 76
           TK       +++ ++IR + GV+ +R   + NF+E         ++VYK +A+LYF +  
Sbjct: 17  TKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGY-----KVVYKRYASLYFCMCI 76

Query: 77  NSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK 120
           + ++NEL +L++I       +VE LD+ F +VCELDL+FN+ K
Sbjct: 77  DEADNELEVLEIIHH-----YVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of HG10014613 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 17  TKTEQTMPVEKQQELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKHFATLYFVLVF 76
           TK       +++ ++IR + GV+ +R   + NFVE         ++VYK +A+LYF +  
Sbjct: 17  TKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGY-----KVVYKRYASLYFCMCI 76

Query: 77  NSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSK 120
           +  +NEL +L++I       +VE LD+ F +VCELDL+FN+ K
Sbjct: 77  DQEDNELEVLEIIHH-----YVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of HG10014613 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 9   LQQRMRPATKTEQTMPVEKQQ--ELIRSVYGVLCSRAENVSNFVEAESIFGLDSRLVYKH 68
           LQ R       +  +P+E+ +  ++   V+ ++ +R    +NFVE  +      +++Y+ 
Sbjct: 7   LQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRT-----HKVIYRR 66

Query: 69  FATLYFVLVFNSSENELAMLDLIQGPTLSVFVETLDKCFKNVCELDLVFNYSKV 121
           +A L+F +  + ++NELA L+     ++ +FVE LD  F NVCELDLVFN+ KV
Sbjct: 67  YAGLFFSVCVDITDNELAYLE-----SIHLFVEILDHFFSNVCELDLVFNFHKV 110

The following BLAST results are available for this feature:

BLAST of HG10014613 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452384.1	1.3e-39	89.00	PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: ...	[more]
XP_038893159.1	2.2e-39	90.00	AP-3 complex subunit sigma [Benincasa hispida] >XP_038893161.1 AP-3 complex subu...	[more]
XP_011655957.1	4.9e-39	88.00	AP-3 complex subunit sigma [Cucumis sativus] >XP_031741534.1 AP-3 complex subuni...	[more]
XP_023543862.1	1.4e-38	87.13	AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo]	[more]
KAG6603975.1	2.4e-38	88.00	AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]

BLAST of HG10014613 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ37	4.0e-36	76.24	AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=...	[more]
Q1JQA3	7.4e-22	52.48	AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1	[more]
P59780	7.4e-22	52.48	AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1	[more]
Q8BSZ2	7.4e-22	52.48	AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1	[more]
Q5RDP9	7.4e-22	52.48	AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1	[more]

BLAST of HG10014613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BT37	6.2e-40	89.00	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1	[more]
A0A6J1IUE1	2.6e-38	87.00	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111478508 PE=3 SV=1	[more]
A0A6J1GFL2	9.9e-38	86.00	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111453507 PE=3 SV=1	[more]
A0A6J1GFN8	1.3e-37	88.66	AP-3 complex subunit sigma-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1U8N8R1	2.2e-37	77.36	AP complex subunit sigma OS=Gossypium hirsutum OX=3635 GN=LOC107945750 PE=3 SV=1	[more]

BLAST of HG10014613 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50860.1	2.9e-37	76.24	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	4.2e-12	36.54	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	1.2e-11	34.95	associated protein 19	[more]
AT4G35410.2	1.2e-11	35.92	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.5e-09	33.33	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 6..123 e-value: 3.4E-33 score: 116.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11753:SF2	ADAPTOR PROTEIN COMPLEX AP-3 SMALL CHAIN SIGMA3	coord: 21..122
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 6..123 e-value: 1.1E-31 score: 107.6
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 21..122
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 22..121 e-value: 3.4E-26 score: 91.9
IPR000804	Clathrin adaptor complex, small chain	PROSITE	PS00989	CLAT_ADAPTOR_S	coord: 62..72
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 21..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014613.1	HG10014613.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006896	Golgi to vacuole transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030123	AP-3 adaptor complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030117	membrane coat