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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGTGAAGCGGCTTATCGTTCATCAACGAAATCAGAAATGAGAAGAAGAATATGAACAAACAGATCTAGGGTTTGTTTGTAGAAGAAAGAGTGATTAAATTGAATTGGAAATTGGAATGACTGTACGCTGCTACGTACCAGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA mRNA sequence ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA Coding sequence (CDS) ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA Protein sequence MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVSLTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV
Homology
BLAST of HG10015062 vs. NCBI nr
Match: KGN51617.1 (hypothetical protein Csa_008300 [Cucumis sativus]) HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09 Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0
Query: 1 MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVS 60
MVEF IHCKE EE+A+ + + + E K NSY EEAF G N+ S
Sbjct: 16 MVEFRWIHCKEHEEQAQKSKTDQMKGIMQLIEMK--RNSYR--------EEAFAGVNKAS 75
Query: 61 LTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV 99
T+ RL ME T VG RQPR PS V+Y ENS S+S+
Sbjct: 76 QTEQRLTMESTTAVVGFSRQPRHPSAVIYSENSVSSSL 103
BLAST of HG10015062 vs. ExPASy TrEMBL
Match: A0A0A0KT76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G585440 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10 Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0
Query: 1 MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVS 60
MVEF IHCKE EE+A+ + + + E K NSY EEAF G N+ S
Sbjct: 16 MVEFRWIHCKEHEEQAQKSKTDQMKGIMQLIEMK--RNSYR--------EEAFAGVNKAS 75
Query: 61 LTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV 99
T+ RL ME T VG RQPR PS V+Y ENS S+S+
Sbjct: 76 QTEQRLTMESTTAVVGFSRQPRHPSAVIYSENSVSSSL 103
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KGN51617.1 | 1.9e-09 | 45.92 | hypothetical protein Csa_008300 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KT76 | 9.0e-10 | 45.92 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G585440 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 77..98 |
Relationships
The following mRNA feature(s) are a part of this gene:
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