HG10008944 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008944
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L9
Location	Chr06: 945365 .. 946935 (+)
RNA-Seq Expression	HG10008944
Synteny	HG10008944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCATCCTCTCATCTGAAACCATGGATATCCCCGAGGGGGTAAAGATCAAAGTGAACGCCAAAATCATTGAGGTCGAGGGCCCTCGAGGGAAACTCGTTCGCAATTTCAAGCATCTGAATCTCGATTTCCAGTTGATCACCGACGAGGCTACCGGAAAGAAGAAGCTCAAGATTGATGCTTGGTTTGGTTCCAGGAAGACTTCTGCTGCCATTCGCACTGCTCTTAGCCATGTTGAGAATCTGATCACTGGTGTCACCAAGGGCTACCGTTACAAAATGCGATTTGTTTATGCTCACTTTCCGATCAATGCTAGCATCACCAACGCCAACAAATCCATCGAGATCCGAAACTTTCTTGGCGAGAAGAAGGTATAATTCTTTTTTCCCTCTCGCTCTTTTATCATTAATTACGCTATCTAGATGTTGGTTGGTTTCTGGATTCTGGATTCATATTTACTGCTGCGTTTGCATTTTATCCTAATTGAATGTCGAATGTTCAAGACTTAAGGGTTAAGAAGGATTAAGTGACTACTGTTTTAAACTTGTTTATGTAGGAAGCCCTAGAACTGTGAAGTCTTATTTTCTCTCCCCCTTTTGTGATTAGTTGAGTATTTAAGATTGACATCTAGAGGATAATTTTTAATAAAAAGCAGAATAATGTTTCTTTCTTAGATTGTCTTTACGTGATTCATTATTCTCCATCAACTAGATTTAAAGAATGGAACAAATCAAATACCCACTTGGCCTGGAAACTGAAATCTAAATTCCATAAAATCGGGCACTACAACTTACAATTACATGGAAAATGCTAAATAATGAGCAATTGAAAACTTTGTTTAGTAAAACAATGTTTGGGTACTAGGAAGTTCAAATAGATGTTAAGAACAATCGGGGGAGATGCTGAGAGGTAAAGTGGTCAGATGATTGAGGAGAAAGTGAAAGAGAGACGATACCTAGAAAGGGAGTCAGAGAGTCTGATAGAATAGGAACATTGAGTTTGAGTGTATTTAAATTGAAGGACATAGTTTACTGATCACATTGAATACAGTCCTTCAATTATTTCATACAAAGACCAAGTACCTTATATTCAAACAAGCATCTAAACGGATCTAGTGTATATTCCAATTATTTTTCTGGAAAACCCATCTTTTATATGTTCCCTGTGTATTAATATAATTATTCTTTGTAAAAATGCTTTTTTAAAACTATATATATGATGTGTGAATGCAATGTTTACATAGGTGCGAAAAGTAGATATGCTTGATGGGGTATCTATTCTTCGATCTGAGAAGGTTAAGGATGAGTTAGTCTTGGATGGTAACGATATTGAGCTTGTATCTCGATCTGCTGCGTTGATTAACCAGGTATGCTTCTCTCCCATGCCACATTTTGATTTGTTCTTGCTTGCAAAGCTTGTGCCTGCACGCACGGTCATAGTTGGTTTTATGCTCACTTTTTTCTTTTCTTCTTGGTGACAGAAATGCCATGTGAAGAACAAAGATATCCGGAAGTTCCTTGATGGTATTTATGTGAGCGAAAAGGGAACCGTTGTTGAAGAGGAATGA

mRNA sequence

ATGAAGACCATCCTCTCATCTGAAACCATGGATATCCCCGAGGGGGTAAAGATCAAAGTGAACGCCAAAATCATTGAGGTCGAGGGCCCTCGAGGGAAACTCGTTCGCAATTTCAAGCATCTGAATCTCGATTTCCAGTTGATCACCGACGAGGCTACCGGAAAGAAGAAGCTCAAGATTGATGCTTGGTTTGGTTCCAGGAAGACTTCTGCTGCCATTCGCACTGCTCTTAGCCATGTTGAGAATCTGATCACTGGTGTCACCAAGGGCTACCGTTACAAAATGCGATTTGTTTATGCTCACTTTCCGATCAATGCTAGCATCACCAACGCCAACAAATCCATCGAGATCCGAAACTTTCTTGGCGAGAAGAAGGTGCGAAAAGTAGATATGCTTGATGGGGTATCTATTCTTCGATCTGAGAAGGTTAAGGATGAGTTAGTCTTGGATGGTAACGATATTGAGCTTGTATCTCGATCTGCTGCGTTGATTAACCAGAAATGCCATGTGAAGAACAAAGATATCCGGAAGTTCCTTGATGGTATTTATGTGAGCGAAAAGGGAACCGTTGTTGAAGAGGAATGA

Coding sequence (CDS)

ATGAAGACCATCCTCTCATCTGAAACCATGGATATCCCCGAGGGGGTAAAGATCAAAGTGAACGCCAAAATCATTGAGGTCGAGGGCCCTCGAGGGAAACTCGTTCGCAATTTCAAGCATCTGAATCTCGATTTCCAGTTGATCACCGACGAGGCTACCGGAAAGAAGAAGCTCAAGATTGATGCTTGGTTTGGTTCCAGGAAGACTTCTGCTGCCATTCGCACTGCTCTTAGCCATGTTGAGAATCTGATCACTGGTGTCACCAAGGGCTACCGTTACAAAATGCGATTTGTTTATGCTCACTTTCCGATCAATGCTAGCATCACCAACGCCAACAAATCCATCGAGATCCGAAACTTTCTTGGCGAGAAGAAGGTGCGAAAAGTAGATATGCTTGATGGGGTATCTATTCTTCGATCTGAGAAGGTTAAGGATGAGTTAGTCTTGGATGGTAACGATATTGAGCTTGTATCTCGATCTGCTGCGTTGATTAACCAGAAATGCCATGTGAAGAACAAAGATATCCGGAAGTTCCTTGATGGTATTTATGTGAGCGAAAAGGGAACCGTTGTTGAAGAGGAATGA

Protein sequence

MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNFLGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTVVEEE

Homology

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BLAST of HG10008944 vs. NCBI nr
Match: XP_004145906.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_000354 [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 3.5e-100
Identity = 191/194 (98.45%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. NCBI nr
Match: XP_038876175.1 (60S ribosomal protein L9 [Benincasa hispida])

HSP 1 Score: 374.0 bits (959), Expect = 7.8e-100
Identity = 190/194 (97.94%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVSAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. NCBI nr
Match: XP_008437538.1 (PREDICTED: 60S ribosomal protein L9 [Cucumis melo] >ADN33776.1 60S ribosomal protein l9 [Cucumis melo subsp. melo] >KAA0042589.1 60S ribosomal protein L9 [Cucumis melo var. makuwa] >TYK05992.1 60S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 372.9 bits (956), Expect = 1.7e-99
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. NCBI nr
Match: XP_023551562.1 (60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 2.9e-99
Identity = 189/194 (97.42%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL+RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. NCBI nr
Match: XP_022159699.1 (60S ribosomal protein L9-like [Momordica charantia])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 189/194 (97.42%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E+TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.3e-93
Identity = 176/194 (90.72%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETM+IP+GV IKVNAK+IEVEGPRGKLVR+FKHLNLDF LITDE  GKKKLKI
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKG VV EE
Sbjct: 181 GIYVSEKGAVVVEE 193

[Close]

BLAST of HG10008944 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 330.1 bits (845), Expect = 1.7e-89
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEK  +VEEE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of HG10008944 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.9e-88
Identity = 161/194 (82.99%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NKSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

[Close]

BLAST of HG10008944 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 322.0 bits (824), Expect = 4.6e-87
Identity = 159/193 (82.38%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTIL+SETM+IPEGV ++V AK++ VEGPRGKL RNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN+N +IEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+ILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEE 194
           GIYVS+KGT+ E+
Sbjct: 181 GIYVSDKGTITED 189

[Close]

BLAST of HG10008944 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 116/194 (59.79%), Postives = 144/194 (74.23%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILS++T+DIP+ V + +  + + V+GPRG L R F H+NL+ +L+  +   +KKL++
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKK---QKKLRV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           D W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVE E
Sbjct: 181 GIYVSEKGTVVEPE 191

[Close]

BLAST of HG10008944 vs. ExPASy TrEMBL
Match: A0A0A0KJL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139920 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 191/194 (98.45%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. ExPASy TrEMBL
Match: A0A5D3C437 (60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00890 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.4e-100
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. ExPASy TrEMBL
Match: E5GBD5 (60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.4e-100
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. ExPASy TrEMBL
Match: A0A1S3AUU6 (60S ribosomal protein L9 OS=Cucumis melo OX=3656 GN=LOC103482923 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.4e-100
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. ExPASy TrEMBL
Match: A0A6J1E338 (60S ribosomal protein L9-like OS=Momordica charantia OX=3673 GN=LOC111026041 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 189/194 (97.42%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E+TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKGTVVEEE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of HG10008944 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-90
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEK  +VEEE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of HG10008944 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-90
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEK  +VEEE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of HG10008944 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-89
Identity = 161/194 (82.99%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NKSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVVEEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

The following BLAST results are available for this feature:

BLAST of HG10008944 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145906.1	3.5e-100	98.45	60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_...	[more]
XP_038876175.1	7.8e-100	97.94	60S ribosomal protein L9 [Benincasa hispida]	[more]
XP_008437538.1	1.7e-99	97.94	PREDICTED: 60S ribosomal protein L9 [Cucumis melo] >ADN33776.1 60S ribosomal pro...	[more]
XP_023551562.1	2.9e-99	97.42	60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022159699.1	3.9e-99	97.42	60S ribosomal protein L9-like [Momordica charantia]	[more]

BLAST of HG10008944 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	4.3e-93	90.72	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
P49209	1.7e-89	85.05	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
Q9SZX9	1.9e-88	82.99	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49210	4.6e-87	82.38	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	1.5e-58	59.79	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of HG10008944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJL8	1.7e-100	98.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139920 PE=3 SV=1	[more]
A0A5D3C437	8.4e-100	97.94	60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
E5GBD5	8.4e-100	97.94	60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3AUU6	8.4e-100	97.94	60S ribosomal protein L9 OS=Cucumis melo OX=3656 GN=LOC103482923 PE=3 SV=1	[more]
A0A6J1E338	1.9e-99	97.42	60S ribosomal protein L9-like OS=Momordica charantia OX=3673 GN=LOC111026041 PE=...	[more]

BLAST of HG10008944 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33120.1	1.2e-90	85.05	Ribosomal protein L6 family	[more]
AT1G33140.1	1.2e-90	85.05	Ribosomal protein L6 family	[more]
AT4G10450.1	1.3e-89	82.99	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..190 e-value: 9.9E-32 score: 107.8
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..194
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 4.9E-30 score: 105.9
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..194 e-value: 4.5E-52 score: 176.4
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..187
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 12..90 e-value: 1.9E-11 score: 44.5 coord: 103..181 e-value: 1.0E-11 score: 45.3
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..194
IPR002359	Ribosomal protein L6, conserved site-2	PROSITE	PS00700	RIBOSOMAL_L6_2	coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008944.1	HG10008944.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome