HG10017415 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTGATAGAGAGTCAAAATTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGACGTATAATTTAGAGACTACGAAACAAAGATTCGAATGATTAGGTGAAGTAGTCTTTTCACGTGCAATATTCTTTTTTTGTAGGGATACAATTCGAAATAGAAAATTTCAAGAAACTTATTTCTTCCAATAAGTAGATTCGGAATTAAGGTAAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGACCCCTAAAGGCCACCCACAATATACACATAAAAATAAATTAAAGGATCCGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTAGATTTATGAGATGGTAAAATATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACATTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTGATCAAAAATATTACTATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA MKEQKGLRISEGLITESLTNDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLCQGSWMRNCSRHHLTTFGRNR Homology
BLAST of HG10017415 vs. NCBI nr
Match: KAF9825354.1 (hypothetical protein H0E87_005076 [Populus deltoides]) HSP 1 Score: 294.3 bits (752), Expect = 7.9e-76 Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 0
BLAST of HG10017415 vs. NCBI nr
Match: TXG68058.1 (hypothetical protein EZV62_009333 [Acer yangbiense]) HSP 1 Score: 287.3 bits (734), Expect = 9.6e-74 Identity = 150/169 (88.76%), Postives = 153/169 (90.53%), Query Frame = 0
BLAST of HG10017415 vs. NCBI nr
Match: KAF8376862.1 (hypothetical protein HHK36_031458 [Tetracentron sinense] >KAF8398788.1 hypothetical protein HHK36_014646 [Tetracentron sinense]) HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71 Identity = 147/172 (85.47%), Postives = 151/172 (87.79%), Query Frame = 0
BLAST of HG10017415 vs. NCBI nr
Match: XP_027332403.1 (uncharacterized protein LOC113847446 [Abrus precatorius] >XP_027332529.1 uncharacterized protein LOC113847521 [Abrus precatorius] >XP_027332764.1 uncharacterized protein LOC113847686 [Abrus precatorius] >XP_027339175.1 uncharacterized protein LOC113852952 [Abrus precatorius] >XP_027344314.1 uncharacterized protein LOC113856613 [Abrus precatorius] >XP_027345341.1 uncharacterized protein LOC113857538 [Abrus precatorius] >XP_027345910.1 uncharacterized protein LOC113857838 [Abrus precatorius]) HSP 1 Score: 277.3 bits (708), Expect = 9.9e-71 Identity = 148/188 (78.72%), Postives = 152/188 (80.85%), Query Frame = 0
BLAST of HG10017415 vs. NCBI nr
Match: KAD0481659.1 (hypothetical protein E3N88_44197 [Mikania micrantha]) HSP 1 Score: 276.2 bits (705), Expect = 2.2e-70 Identity = 145/170 (85.29%), Postives = 151/170 (88.82%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42 Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: A1XGS0 (DNA-directed RNA polymerase subunit alpha OS=Ranunculus macranthus OX=334596 GN=rpoA PE=3 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.6e-42 Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41 Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q7YJU6 (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoA PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.7e-41 Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy Swiss-Prot
Match: Q3V502 (DNA-directed RNA polymerase subunit alpha OS=Acorus calamus OX=4465 GN=rpoA PE=3 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.2e-41 Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A5C7IG80 (Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_009333 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 4.6e-74 Identity = 150/169 (88.76%), Postives = 153/169 (90.53%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A5N6LCR1 (RPOLD domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_44197 PE=3 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70 Identity = 145/170 (85.29%), Postives = 151/170 (88.82%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A2P6P177 (Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.8e-70 Identity = 149/198 (75.25%), Postives = 154/198 (77.78%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A5N6N9A8 (S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22057 PE=3 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 3.1e-70 Identity = 144/172 (83.72%), Postives = 150/172 (87.21%), Query Frame = 0
BLAST of HG10017415 vs. ExPASy TrEMBL
Match: A0A7J6HLW7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019803 PE=3 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 4.1e-70 Identity = 143/174 (82.18%), Postives = 149/174 (85.63%), Query Frame = 0
BLAST of HG10017415 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha ) HSP 1 Score: 159.8 bits (403), Expect = 2.2e-39 Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0
BLAST of HG10017415 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 ) HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30 Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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