HG10013552.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013552.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Polyamine-modulated factor 1-binding protein
Location	Chr02: 2537285 .. 2539159 (-)
Sequence length	291
RNA-Seq Expression	HG10013552.1
Synteny	HG10013552.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTTCCGAATCAAAACCCAATGATCAGCTTATTCCCTTGCCGGAGTCTGAATCGCTGCCGGAATCTGAATCTGAATCGCAGCTCTCAGTTCTCATATTCGGTACGTTTCTTTGCTTTGCTTCCCTTTCTCTTTCTCTCTAATGCACACATTCAAAGGCGCCAAAAACGCTAACTACTATACGCTTTCTCGCAATGAAAATCTGCCTGCCTGACATTGTTTGGCGAGGTTATTTGTTAGATTTTGTCGCACCTATTGTGAAAAATTGGCATTGTTAATCGTCTTCTACTTATGCTTAAAGAAGTAAGAAATGCTATAAGATCAAACTCTAGCTAGCTGATGAAATTTCTCTCGATCGCATTCTATAATGTTCGACTGGAAACACCGATTAGGTTAACTTTATTCGCTTCTGATATTATGAGTTCGTGTAGGACGAATCCGAAATAGATAGAGGTTGTTTGTTTTAGACAAATTTTTGAACAAATCGGCAGTTTTAATTAGTTGCAGTTTCTTAAGACGAGAAGGAATTTGTATTCTTAAACTTAAGAGTCTGATTTCTCCAAATGGTGGCATTTTATTCTTAACACTACTTGAATCTGATTTGTGTTTAAAAATGGCCAGTCAATATTCACGTCTTACGATTCTACCTCCATTTATATGTGTAATCCTTCTTTTATTTGATTGTCATGCTTCACTTATCCGTTATTTTTTAGTTGTGTAATTCTAGAAGGAATTTTATTAATTCTCTTGCTTCGAGATGATTGTACTCGGAGAAAGGTTGCTCCTCTGATAATTTATAGGCTTATAATTTACACCAGATCAAATGTGCTCATGAGATTAGATCTGTTTTGGAGAGAGGTGGTAAATCACAGCCGAACACATGTGAAAACTTGAGAGCCTTGAAACAAGCAATATCAGTTCAAAGTCAAACCAAGACGAGCTTGCTTCTATCACAAAATCATTTTCTCGTTTTCTCTTTCCTTCTTAGCTTGTTGGTGTTTATCACGCCCTGATCTTTGGATCATTCTGTGTCATTCAATTAGAGAACGCTGGTTCTGATATTTTTACATCCGCGCAGATATATCACAACAGGCTCAATCGGCTATGGAGAACATGCTTAGAATGATCAGGTTTGTTAATTACGAACCAGTAACTCGTTTCTTTCTTTCCTTTTTGTTTTTTGGATTTTTAGTTTGCGGGAAATGTTGTAAAGTGGTAAGCTGCAAGTGGGGAGAGTGAACATTACTACATGCGAACTTGATGCTTCGATGCTATCATCCTTGCACTGACAACGAAATTTTTTTAATTTTTATAAAAGAGATCTTAAAAGCACGAACTCCTCTAAATAATACATGGAGTTGAAGGAACGCAAATAGTATGATGACATGAAGTTTGCTTCGATGCTTAGATTTCTGGTTCATGCTTTCAATAAATACTATAAACAAATTTGTGCCAGCGAAAGATCGACTACTTTACATGCGGAGCCAATTTAAAGCTATGCTCATAAAACACTGGTTTTGTTTACTTTTTTCTTCTTCTTCGTAATAGAGGATTCTCCCAGTCAGAAAATATGAATATACTTTAGTGAAGTTATCTGTTCTTTGTCGCCCACCAATACTCCTAATGACTCAAATTAATTGCATAAAACATAATAATGGTACGTCTACGTCGTCATGCTAACCTTAGTCTTCTCGTTTTCAACTGTTTGCAGTGAAATTGATCAAAACGCTGTTGGAATAGTGGAAGATATAGAGAAGTGCAGGGGTTCTTCTCTTGACAGGAAGGGGGTGCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAATGGAGGGGGAACGCTGTAA

mRNA sequence

ATGGCAACTTCCGAATCAAAACCCAATGATCAGCTTATTCCCTTGCCGGAGTCTGAATCGCTGCCGGAATCTGAATCTGAATCGCAGCTCTCAGTTCTCATATTCGTCTTCTCGTTTTCAACTGTTTGCAGTGAAATTGATCAAAACGCTGTTGGAATAGTGGAAGATATAGAGAAGTGCAGGGGTTCTTCTCTTGACAGGAAGGGGGTGCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAATGGAGGGGGAACGCTGTAA

Coding sequence (CDS)

ATGGCAACTTCCGAATCAAAACCCAATGATCAGCTTATTCCCTTGCCGGAGTCTGAATCGCTGCCGGAATCTGAATCTGAATCGCAGCTCTCAGTTCTCATATTCGTCTTCTCGTTTTCAACTGTTTGCAGTGAAATTGATCAAAACGCTGTTGGAATAGTGGAAGATATAGAGAAGTGCAGGGGTTCTTCTCTTGACAGGAAGGGGGTGCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAATGGAGGGGGAACGCTGTAA

Protein sequence

MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFSFSTVCSEIDQNAVGIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL

Homology

[Close]

BLAST of HG10013552.1 vs. NCBI nr
Match: XP_022937053.1 (uncharacterized protein LOC111443468 [Cucurbita moschata])

HSP 1 Score: 154.5 bits (389), Expect = 4.8e-34
Identity = 85/105 (80.95%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MA+SESKPNDQLIPLPESESLPESESESQLSVL+F  S            + SEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 97
           GI+EDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of HG10013552.1 vs. NCBI nr
Match: XP_023535872.1 (uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MA+SESKPND LIPLPESESLPE+ESESQLSVL+F  S            + SEIDQNAV
Sbjct: 1   MASSESKPNDHLIPLPESESLPEAESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 97
           GI+EDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of HG10013552.1 vs. NCBI nr
Match: KAG7024488.1 (hypothetical protein SDJN02_13304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 85/107 (79.44%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLP--ESESESQLSVLIFVFS---------FSTVCSEIDQN 60
           MA+SESKPNDQLIPLPESESLP  ESESESQLSVL+F  S            + SEIDQN
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESESQLSVLLFHISQQAQGAMENMLRMISEIDQN 60

Query: 61  AVGIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 97
           AVGI+EDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  AVGILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 107

[Close]

BLAST of HG10013552.1 vs. NCBI nr
Match: XP_022976221.1 (uncharacterized protein LOC111476676 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32
Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MA+SESKP DQLIPLPESESL ESESE+QLSVL+F  S            + SEIDQNAV
Sbjct: 1   MASSESKPTDQLIPLPESESLSESESETQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 97
           GI+EDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of HG10013552.1 vs. NCBI nr
Match: XP_004136463.2 (uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetical protein Csa_001898 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.8e-31
Identity = 83/103 (80.58%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MATSESKPNDQLIPLPESESLP  ESESQLS LIF  S            + SEIDQNAV
Sbjct: 1   MATSESKPNDQLIPLPESESLP--ESESQLSALIFDISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 95
           GIVEDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of HG10013552.1 vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.3e-34
Identity = 85/105 (80.95%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MA+SESKPNDQLIPLPESESLPESESESQLSVL+F  S            + SEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 97
           GI+EDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of HG10013552.1 vs. ExPASy TrEMBL
Match: A0A6J1IGC1 (uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 82/105 (78.10%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MA+SESKP DQLIPLPESESL ESESE+QLSVL+F  S            + SEIDQNAV
Sbjct: 1   MASSESKPTDQLIPLPESESLSESESETQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 97
           GI+EDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of HG10013552.1 vs. ExPASy TrEMBL
Match: A0A0A0LJE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 83/103 (80.58%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MATSESKPNDQLIPLPESESLP  ESESQLS LIF  S            + SEIDQNAV
Sbjct: 1   MATSESKPNDQLIPLPESESLP--ESESQLSALIFDISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 95
           GIVEDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of HG10013552.1 vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.9e-30
Identity = 83/106 (78.30%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MATSESKPNDQLIPLPE ESLP  E ESQLS LIF  S            + SEIDQNAV
Sbjct: 1   MATSESKPNDQLIPLPEPESLP--EPESQLSALIFDISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 97
           GIVEDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]

BLAST of HG10013552.1 vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.9e-30
Identity = 83/106 (78.30%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
           MATSESKPNDQLIPLPE ESLP  E ESQLS LIF  S            + SEIDQNAV
Sbjct: 1   MATSESKPNDQLIPLPEPESLP--EPESQLSALIFDISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 97
           GIVEDIEKCRGS+LDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]

BLAST of HG10013552.1 vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1  MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
          MA S S+ + QL+    +   P  +++S L+ L+F  S            +  EIDQN+V
Sbjct: 1  MAESPSQSDAQLV----AHQSPGQQADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSV 60

Query: 61 GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 95
          GI E+IEK +  ++++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 61 GIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]

BLAST of HG10013552.1 vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1  MATSESKPNDQLIPLPESESLPESESESQLSVLIFVFS---------FSTVCSEIDQNAV 60
          MA S S+ + QL+    +   P  +++S L+ L+F  S            +  EIDQN+V
Sbjct: 1  MAESPSQSDAQLV----AHQSPGQQADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSV 60

Query: 61 GIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 95
          GI E+IEK +  ++++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 61 GIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]

BLAST of HG10013552.1 vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-12
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 45  EIDQNAVGIVEDIEKCRGSSLDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 95
           EIDQN+VGI E+IEK +  ++++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 82  EIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 131

The following BLAST results are available for this feature:

BLAST of HG10013552.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937053.1	4.8e-34	80.95	uncharacterized protein LOC111443468 [Cucurbita moschata]	[more]
XP_023535872.1	4.0e-33	79.05	uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo]	[more]
KAG7024488.1	1.5e-32	79.44	hypothetical protein SDJN02_13304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022976221.1	4.5e-32	78.10	uncharacterized protein LOC111476676 [Cucurbita maxima]	[more]
XP_004136463.2	3.8e-31	80.58	uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetica...	[more]

BLAST of HG10013552.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013552.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEZ1	2.3e-34	80.95	uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A6J1IGC1	2.2e-32	78.10	uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676...	[more]
A0A0A0LJE0	1.8e-31	80.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1	[more]
A0A5A7TBQ0	5.9e-30	78.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CR82	5.9e-30	78.30	uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=...	[more]

BLAST of HG10013552.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25570.1	1.1e-12	41.75	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G25570.2	1.1e-12	41.75	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT5G25570.3	5.5e-12	62.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR36800	POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN	coord: 1..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10013552	HG10013552	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10013552.1-cds	HG10013552.1-cds-Chr02:2537285..2537469	CDS
HG10013552.1-cds	HG10013552.1-cds-Chr02:2539054..2539159	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10013552.1	HG10013552.1-protein	polypeptide