Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACTCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGAGTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGACAGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAATAG
mRNA sequence
ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACTCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGAGTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGACAGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAATAG
Coding sequence (CDS)
ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACTCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGAGTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGACAGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAATAG
Protein sequence
MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Homology
BLAST of Moc01g26970 vs. NCBI nr
Match:
XP_022133249.1 (protein SKIP34 [Momordica charantia])
HSP 1 Score: 177.2 bits (448), Expect = 6.6e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60
MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL
Sbjct: 1 MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60
Query: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Sbjct: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 92
BLAST of Moc01g26970 vs. NCBI nr
Match:
XP_022978829.1 (protein SKIP34 [Cucurbita maxima])
HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH RSLFRGS++P Q+SVP+NG+ DNLRGRLAETESRLAQVRAREA LSR+LEE
Sbjct: 1 MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96
BLAST of Moc01g26970 vs. NCBI nr
Match:
XP_011657944.1 (protein SKIP34 [Cucumis sativus])
HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH R LFRGSL PYQ+SVP+NG DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1 MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96
BLAST of Moc01g26970 vs. NCBI nr
Match:
XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH RSLFRG+++P Q+SVP+NG+ DNLRGRLAETESRLAQVRAREA LSRLLEE
Sbjct: 1 MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLV VMEILENYLKR+YRDRQEY VRLL+P+S K
Sbjct: 61 MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVSRK 96
BLAST of Moc01g26970 vs. NCBI nr
Match:
XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])
HSP 1 Score: 144.8 bits (364), Expect = 3.6e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH R LFRGS PYQ+SVP+NG DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1 MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96
BLAST of Moc01g26970 vs. ExPASy Swiss-Prot
Match:
Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMK 60
MC GH +SL S +S D+ D+LR RLAETE+RL + RAREAELSR LE MK
Sbjct: 1 MCYGHNQSLSSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEHMK 60
Query: 61 RLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
R VSVMEI+E +L+R+++++++ RL SP+S K
Sbjct: 61 RFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94
BLAST of Moc01g26970 vs. ExPASy TrEMBL
Match:
A0A6J1BVG6 (protein SKIP34 OS=Momordica charantia OX=3673 GN=LOC111005890 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60
MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL
Sbjct: 1 MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRL 60
Query: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Sbjct: 61 VSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 92
BLAST of Moc01g26970 vs. ExPASy TrEMBL
Match:
A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH RSLFRGS++P Q+SVP+NG+ DNLRGRLAETESRLAQVRAREA LSR+LEE
Sbjct: 1 MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96
BLAST of Moc01g26970 vs. ExPASy TrEMBL
Match:
A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 80/96 (83.33%), Postives = 83/96 (86.46%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH R LFRGSL PYQ+SVP+NG DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1 MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96
BLAST of Moc01g26970 vs. ExPASy TrEMBL
Match:
A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)
HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH R LFRGS PYQ+SVP+NG DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1 MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96
BLAST of Moc01g26970 vs. ExPASy TrEMBL
Match:
A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)
HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEE 60
MCNGH R LFRGS PYQ+SVP+NG DNLRGRL ETE RLAQVRAREAELSRLLEE
Sbjct: 1 MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
Query: 61 MKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
MKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96
BLAST of Moc01g26970 vs. TAIR 10
Match:
AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0
Query: 1 MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMK 60
MC GH +SL S +S D+ D+LR RLAETE+RL + RAREAELSR LE MK
Sbjct: 1 MCYGHNQSLSSRSSLRRRSHDGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEHMK 60
Query: 61 RLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK 93
R VSVMEI+E +L+R+++++++ RL SP+S K
Sbjct: 61 RFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8GWU7 | 1.7e-15 | 52.13 | Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1BVG6 | 3.2e-41 | 100.00 | protein SKIP34 OS=Momordica charantia OX=3673 GN=LOC111005890 PE=4 SV=1 | [more] |
A0A6J1IV54 | 2.7e-32 | 81.25 | protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1 | [more] |
A0A0A0KIR5 | 2.7e-32 | 83.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1 | [more] |
A0A5D3CN14 | 1.8e-31 | 82.29 | Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330... | [more] |
A0A1S3B1B8 | 1.8e-31 | 82.29 | protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT5G65495.1 | 1.2e-16 | 52.13 | unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter... | [more] |