Moc01g16340 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g16340
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr1: 10528350 .. 10529660 (+)
RNA-Seq Expression	Moc01g16340
Synteny	Moc01g16340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAGTTTGTTTGCACTCTTTACAAACTCAATAACAAGTTGCATCAGTATTTAGCTTTAGCCAATGCGGCACGGAATCCACACGTTTTCCTAGTGATCCATGTTGCGGAGCAAGGTGGGGTGGATGGGAGCATTTGCATCTCCTGCCGAAGTCACGTACGAGGTAATCCAATTAGCTTTTTGGGGAACATTTGGAACTTGTTTGTGTTGGTTAATTAATTTGGTTTCTATCATTCCAAATCGACCAATAAAAAGTGGTTACTGTTAAACAACAAAATAATAAACCAACAAAATACAACAAAATAACACACCAGCAGAATATATTAACACCTCAACAAGTGATATTTCAAAATAGTAGCAGTAGATCTACAGGTCCTTGATTGGCATCATTCCATGATCAACATATTCTCCTTCCTTATTTGGTGAAGATTTTAAGCAATCTACAGCAACTCAATTACTCAGCAATATCCCTTAATTACTGGCCTTTATTCATTTCTTATTACCGTTGCAGCCTTCCTTACCTATTTTATTTTTCCTTTCTTGCTTTAGCTTGGTCAGTGGTAGTCTTTCATGTGTCTATTTATCCATCTTGGATTTAGCTTGTAAAACATCTTTTTTCACACAAACCAGAATAATACATAATCTGTTTTCATTGTTCCTTCAATTCTATTTCTTTAACCCATTCTTTCAAGCTAAGTTTTATATGATATCAGAGCTATAGACACAACACAAGAAAGACATATCAACTACCAATTCTCTCATATCTTCACCATGGCAAAACAAGAAGCACCATTGACCATTCAATCATTTCATCAATGTGCAAGTCTCATATCCATCAAATTGAACACTTCTAACTATTTACTTTGGAAGACACAAGTATTGCCACTTATTAGGACTCTTGGAGTAGAGCATCACCTCAAAGAAGATCCACCAGAGATCAAGTAAACCCAAGATGAAAAAGAAATTGCAGAAATTAACACTTAATTCAACACATGGACCAACAATGATGGCCTTCTTACCTCATGACTTCTTGGAATTATTACGAAAGATGTGTTGGCTTTGATTGAAGGTACTGATACTGCAAAACAGGTATGACATTCTCTTGAAAATTTATTATTGACTATGACAAAAGAGAATGAGATACATGCCAATGAAGCTCTTCTTACTCTAAAGAAAGGAACATCATCTATGGATGATTATATTAGAAAGTTTAAGAGTTTATGTGACAAGCTTGCAGCAATGAAAAAGCCATTGGATGATCTATCTAGAGTCTTCCATATTGCAAAAGGGTTAGGGAGCAATTACTAG

mRNA sequence

ATGTGTGAGTTTGTTTGCACTCTTTACAAACTCAATAACAAGTTGCATCAGTATTTAGCTTTAGCCAATGCGGCACGGAATCCACACGTTTTCCTAGTGATCCATGTTGCGGAGCAAGGTGGGGTGGATGGGAGCATTTGCATCTCCTGCCGAAGTCACGTACGAGATGTGTTGGCTTTGATTGAAGGTACTGATACTGCAAAACAGAAAGGAACATCATCTATGGATGATTATATTAGAAAGTTTAAGAGTTTATGTGACAAGCTTGCAGCAATGAAAAAGCCATTGGATGATCTATCTAGAGTCTTCCATATTGCAAAAGGGTTAGGGAGCAATTACTAG

Coding sequence (CDS)

ATGTGTGAGTTTGTTTGCACTCTTTACAAACTCAATAACAAGTTGCATCAGTATTTAGCTTTAGCCAATGCGGCACGGAATCCACACGTTTTCCTAGTGATCCATGTTGCGGAGCAAGGTGGGGTGGATGGGAGCATTTGCATCTCCTGCCGAAGTCACGTACGAGATGTGTTGGCTTTGATTGAAGGTACTGATACTGCAAAACAGAAAGGAACATCATCTATGGATGATTATATTAGAAAGTTTAAGAGTTTATGTGACAAGCTTGCAGCAATGAAAAAGCCATTGGATGATCTATCTAGAGTCTTCCATATTGCAAAAGGGTTAGGGAGCAATTACTAG

Protein sequence

MCEFVCTLYKLNNKLHQYLALANAARNPHVFLVIHVAEQGGVDGSICISCRSHVRDVLALIEGTDTAKQKGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY

Homology

[Close]

BLAST of Moc01g16340 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 7.9e-12
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 56  DVLALIEGTDTAKQ----------------------------KGTSSMDDYIRKFKSLCD 114
           DVL L+EGT+TAK+                            KG+ SMD+YIRKFK+LCD
Sbjct: 93  DVLTLLEGTETAKEVWHSLEELLLTMTKENEIHLNEALLTLKKGSLSMDEYIRKFKNLCD 152

[Close]

BLAST of Moc01g16340 vs. NCBI nr
Match: KGN45805.1 (hypothetical protein Csa_005190 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 54  VRDVLALIEGTDTAKQKGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY 113
           + DV  +IEGT+T  QKG S++D++++K K LCDKLAAMKKP DD+ +VF +A+GLGS Y
Sbjct: 49  LEDVFNMIEGTNTTFQKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRY 108

[Close]

BLAST of Moc01g16340 vs. NCBI nr
Match: CAN83340.1 (hypothetical protein VITISV_021483 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 55  RDVLALIEGTDTA-----------------KQKGTSSMDDYIRKFKSLCDKLAAMKKPLD 114
           ++V+ L++GT+TA                 K+KGT S+D+Y+R+FK +CD LAA++KP+ 
Sbjct: 33  KEVMLLLDGTETAYDVWNSLGEKLIPMTKEKEKGTRSLDEYLREFKGICDALAAVRKPVS 92

[Close]

BLAST of Moc01g16340 vs. NCBI nr
Match: PNX56937.1 (hypothetical protein L195_g050142, partial [Trifolium pratense])

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 70  KGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY 114
           KGT S+++YIRKFK +CDKLAA+ KPL D+ +VF I+KGLG+ Y
Sbjct: 46  KGTLSLEEYIRKFKEICDKLAAIGKPLSDVDKVFQISKGLGNKY 89

[Close]

BLAST of Moc01g16340 vs. NCBI nr
Match: PNX82907.1 (hypothetical protein L195_g038944, partial [Trifolium pratense])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 70  KGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY 114
           KG+ S+D+YIRKFK +CDKLAA+ KPL D+ +VF ++KGLG+ Y
Sbjct: 59  KGSLSLDEYIRKFKEICDKLAAIGKPLSDVDKVFQVSKGLGNKY 102

[Close]

BLAST of Moc01g16340 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 56  DVLALIEGTDTAKQ----------------------------KGTSSMDDYIRKFKSLCD 114
           DVL L+EGT+TAK+                            KG+ SMD+YIRKFK+LCD
Sbjct: 93  DVLTLLEGTETAKEVWHSLEELLLTMTKENEIHLNEALLTLKKGSLSMDEYIRKFKNLCD 152

[Close]

BLAST of Moc01g16340 vs. ExPASy TrEMBL
Match: A0A0A0K7S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012300 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 54  VRDVLALIEGTDTAKQKGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY 113
           + DV  +IEGT+T  QKG S++D++++K K LCDKLAAMKKP DD+ +VF +A+GLGS Y
Sbjct: 49  LEDVFNMIEGTNTTFQKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRY 108

[Close]

BLAST of Moc01g16340 vs. ExPASy TrEMBL
Match: A5BKK9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_021483 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 55  RDVLALIEGTDTA-----------------KQKGTSSMDDYIRKFKSLCDKLAAMKKPLD 114
           ++V+ L++GT+TA                 K+KGT S+D+Y+R+FK +CD LAA++KP+ 
Sbjct: 33  KEVMLLLDGTETAYDVWNSLGEKLIPMTKEKEKGTRSLDEYLREFKGICDALAAVRKPVS 92

[Close]

BLAST of Moc01g16340 vs. ExPASy TrEMBL
Match: A0A2C9VFN4 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G123300 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-08
Identity = 26/45 (57.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 69  QKGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY 114
           +KG+ S+D ++++FKS+CD LAA+KKP+DDL +VF +A+GLGS Y
Sbjct: 129 KKGSKSLDSFLKEFKSICDNLAAIKKPVDDLDKVFQLARGLGSKY 173

[Close]

BLAST of Moc01g16340 vs. ExPASy TrEMBL
Match: A0A2K3JSC9 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g050142 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 70  KGTSSMDDYIRKFKSLCDKLAAMKKPLDDLSRVFHIAKGLGSNY 114
           KGT S+++YIRKFK +CDKLAA+ KPL D+ +VF I+KGLG+ Y
Sbjct: 46  KGTLSLEEYIRKFKEICDKLAAIGKPLSDVDKVFQISKGLGNKY 89

The following BLAST results are available for this feature:

BLAST of Moc01g16340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	7.9e-12	48.84	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
KGN45805.1	1.8e-11	58.33	hypothetical protein Csa_005190 [Cucumis sativus]	[more]
CAN83340.1	4.8e-09	42.11	hypothetical protein VITISV_021483 [Vitis vinifera]	[more]
PNX56937.1	2.0e-07	63.64	hypothetical protein L195_g050142, partial [Trifolium pratense]	[more]
PNX82907.1	2.6e-07	61.36	hypothetical protein L195_g038944, partial [Trifolium pratense]	[more]

BLAST of Moc01g16340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g16340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	3.8e-12	48.84	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A0A0K7S3	8.5e-12	58.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012300 PE=4 SV=1	[more]
A5BKK9	2.3e-09	42.11	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A2C9VFN4	7.5e-08	57.78	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G123300 PE=4 SV=...	[more]
A0A2K3JSC9	9.8e-08	63.64	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g05014...	[more]

BLAST of Moc01g16340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47481:SF2	SUBFAMILY NOT NAMED	coord: 68..113
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 68..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g16340.1	Moc01g16340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0015074	DNA integration
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006508	proteolysis
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0009737	response to abscisic acid
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0004185	serine-type carboxypeptidase activity