Sed0005227 (gene) Chayote v1

Overview


Name	Sed0005227
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Alba domain-containing protein
Location	LG11: 1960456 .. 1963082 (-)
RNA-Seq Expression	Sed0005227
Synteny	Sed0005227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGTTGTGGTATCGGAAGTCGCCGAAACACAGAAGAAGAACAGAATTCAGGTTTCCAACACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGGTAAACATTGAATCGTTCTTTCGCTCTTCTGTTCTTTGATTCTTCGATTTGGTTGTAATGTATGAGATTTGAGATTTCTGGTTTCTGATTCCGTTAGGTTTCCGTTCGGTTCTTGAGAAATGAAATCGAAATGCGTAATGGAGCATCTAATTGTAAATCAGTGTGATTCTCTTGATTTATTTCATGATTTGATTGTAGTTTCTGAGATTTGAGACTTTCGATTTCGGTACGAAATGAAATTGAAATGTTTAATGTAGCATCTAATTGTAAATCAGTGTGATTCTCTTGATTTATGTCACGATTTGATTGTAGTTTCTGAGATTTGAGACTTCCGATTTCGTTACGTTTCTGTTTGGTTCTCGAGAAATGAAATCGAAATGTTTAATGCAACATCTAATTATTGTAAATCAGTGTGATTCTCTTGATTTATGTCTCGATTTTATTGTAGTTTCTGAGATTTGAGACTTCCGATTTCACTCGGTTTCAGTTTGATTTTCTTGATTTATGTTACGATTTGATTGTAATTTTTGAGATTTGAGACTTCCGATTTCGTTATATTTCCGTTTGGTTCTCGAGAAATGAAATCGAAATGTGTAATGTAGCATCTACCGATAAATCAGTGTAATTCTTCGATTTGATTGTAATGTCTGAGATTTGTTCTTTAGGTTTCCGTTTGGTTCTGGAGAAATGAAATCGAAATGTAGAATTTAGCATATGCCTATAAGTCAGTAATTCTCTTGATTTATGCTTCGACTTAAACAGTTTATATGCGTAATCGTCTCTGATATTTAGTTTCTTGGTTGTTGTATTGGAAAATCGAATCATCTTATGTTGGCCCTAACCGATAAATCAGTGTGATTCTTTTGATTGGTTTCGCATTTGAACAGTTTTATTTTCATAATCGTGTTCTGATTTCAGTTTCTTGATTGTTTTATTAGAAATTTGAATTGTCTATGTGTTTGTCCTAAAATCCCCTGTTCATTGATCTTCCTTTTCAGTAATTGGAATTTGATACCTCATATTAATTGTTCTTGTTCTTGATTCAGAGGTACATTCAACAACACAATGAAGTTGAGCTCTCTGCATTGGGAATGGGTACTATTTTTTTTTATCTTGAATATCTTTGGGTGTGTTTGGAACACCGGTTTGGTTATGATAGAAGGAAGGCTATGATAAGCGGTAGTTTATGATAAACAATGTTATTATAAATGGTGTTTGTGGGACAAGTTATTATAATGGGGATTACGATAAATGGTGTTTGAGGGACAAGTTAATATAACGAGGATCGTGATAAATGGTGTTTGAGAGACTACTTATGTAACAAAAAGTAATATATGTAAGGTTTAGATAAACGGACACGAAAGTTTAGATAAACAGATATGCAGGTTTAGATAACCACCGTTTATAATAAAATGGTGAGGCAAACGTTGGTTGAGTTATTATAACCAACTCGACCATTTACATAAACGGGGGCTCAAATACATCCTAGTTTTTCTGTTATCCATCTATAATATCTGATGAAAATTTGGGATTTCTGATTTCTTGGCTCAAATCCTTTGCATACAGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAGTAATTCATTTATTATCGCTGTCTTTTAATTCTAATTTATGTTCGTTCATTCCCTGATACATTTGTATGGTTTTGAATCAGAAGTCTTGACCTCGACAGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGGTAGATTCATTTTTTAAAACTAAACTTTAAACTAAATTCATTTTTAGTTCTGACTTGAGATCCTTCACGTGGGATTGATTGATTTTGACTTCGAATTGCTTGCAGAATGTACTGTCTTGTCCCAAAAAATCAATAGAAAATTAATATCTAGATAGATGACTATTATAGATTGAACTCATCTTACCTTAATTTCCCAAAACCCTCTTGTACTGAACTACTCTGTGATTCTTAAAATTAATTTGGATTTTTGGAATGCTTGTTTTCTTATTGTTTCTTTTAACTCTCTACCATTGATTTTGTTTATTAAAACATTCATGGACATGCCGTTCATTTAGATGTTAAGGAAATTGGTAGACGATTAATTTCTGGGTAGATGACCATTATGGATTGAATCCTTCACCTTTTACGTCTTTGAGGTCATCTTGACTTAGTGGTTAGGATGGTTAGTAGCATAAAGTAACTCGAAACTAAAAACTAATTACCAAATGGTAAAAAATTTACACCTTAGCACCGGATGTTGGTTACCTATTTAGCTCCTTCTTTTATTCTGGTATCATTTATATGGTCTTATGAGTTTTTGAGATTCTTAAACTTTTTTTATTATTGTTTTGATAGATTGAGATTGTTCTGGGGAAGTCGGAGAAATTTGATTCTCTAATGACTATGGCCGCAGCAACACGAGAGGTTGCCGATGCGGCTGCTGGCGAAGAAAAAAAGGCAGAGGAAAGCAAGAAGGTGGAGCAGTAG

mRNA sequence

ATGGCGACTGTTGTGGTATCGGAAGTCGCCGAAACACAGAAGAAGAACAGAATTCAGGTTTCCAACACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACACAATGAAGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAAAGTCTTGACCTCGACAGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGATTGAGATTGTTCTGGGGAAGTCGGAGAAATTTGATTCTCTAATGACTATGGCCGCAGCAACACGAGAGGTTGCCGATGCGGCTGCTGGCGAAGAAAAAAAGGCAGAGGAAAGCAAGAAGGTGGAGCAGTAG

Coding sequence (CDS)

ATGGCGACTGTTGTGGTATCGGAAGTCGCCGAAACACAGAAGAAGAACAGAATTCAGGTTTCCAACACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACACAATGAAGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAAAGTCTTGACCTCGACAGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGATTGAGATTGTTCTGGGGAAGTCGGAGAAATTTGATTCTCTAATGACTATGGCCGCAGCAACACGAGAGGTTGCCGATGCGGCTGCTGGCGAAGAAAAAAAGGCAGAGGAAAGCAAGAAGGTGGAGCAGTAG

Protein sequence

MATVVVSEVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADAAAGEEKKAEESKKVEQ

Homology

[Close]

BLAST of Sed0005227 vs. NCBI nr
Match: XP_022143158.1 (uncharacterized protein At2g34160 [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 4.0e-50
Identity = 119/134 (88.81%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MATVVVSEVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60
           MAT+ VS   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA
Sbjct: 1   MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60

Query: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVAD 120
           EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A    A 
Sbjct: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA---AAP 120

Query: 121 AAAGEEKKAEESKK 135
            AA EEKKAEESK+
Sbjct: 121 EAAAEEKKAEESKE 131

[Close]

BLAST of Sed0005227 vs. NCBI nr
Match: XP_038877259.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 121/142 (85.21%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MATVVVSEVA--ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 60
           MAT+ VS  A  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 1   MATIAVSGAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 60

Query: 61  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREV 120
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A  EV
Sbjct: 61  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPEV 120

Query: 121 AD------AAAGEEKKAEESKK 135
            +      AAA EEKKAEE+K+
Sbjct: 121 VETVATGAAAAEEEKKAEENKE 142

[Close]

BLAST of Sed0005227 vs. NCBI nr
Match: XP_008456222.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa] >TYK18437.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 7.5e-49
Identity = 121/142 (85.21%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MATVVVS---EVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MAT+ VS      ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATRE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A  E
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 --VADAAAGEEKKAEESKKVEQ 138
             VA AAAGEE+K  E  K EQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of Sed0005227 vs. NCBI nr
Match: KAG6586319.1 (hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48
Identity = 117/134 (87.31%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 3   TVVVSEVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           T+ VS   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 4   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 63

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADAA 122
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A  T E A A 
Sbjct: 64  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVTAEAA-AG 123

Query: 123 AGEEKK--AEESKK 135
            GEEKK   EESK+
Sbjct: 124 GGEEKKKAGEESKE 136

[Close]

BLAST of Sed0005227 vs. NCBI nr
Match: XP_004139384.1 (uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-48
Identity = 119/139 (85.61%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 2   ATVVVS---EVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61
           AT+ VS      ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62

Query: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATRE- 121
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A  E 
Sbjct: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122

Query: 122 --VADAAAGEEKKAEESKK 135
                AAA EEKKAEESK+
Sbjct: 123 VVAVAAAAEEEKKAEESKE 141

[Close]

BLAST of Sed0005227 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.9e-37
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 11  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLAT 70
           ++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A 
Sbjct: 16  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAV 75

Query: 71  EKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADAAA 124
           EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD L  MAAA  E  DA A
Sbjct: 76  EKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDEL--MAAANEEKEDAEA 126

[Close]

BLAST of Sed0005227 vs. ExPASy TrEMBL
Match: A0A6J1CQ10 (uncharacterized protein At2g34160 OS=Momordica charantia OX=3673 GN=LOC111013094 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 119/134 (88.81%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MATVVVSEVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60
           MAT+ VS   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA
Sbjct: 1   MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60

Query: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVAD 120
           EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A    A 
Sbjct: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA---AAP 120

Query: 121 AAAGEEKKAEESKK 135
            AA EEKKAEESK+
Sbjct: 121 EAAAEEKKAEESKE 131

[Close]

BLAST of Sed0005227 vs. ExPASy TrEMBL
Match: A0A5D3D4G4 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001630 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 121/142 (85.21%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MATVVVS---EVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MAT+ VS      ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATRE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A  E
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 --VADAAAGEEKKAEESKKVEQ 138
             VA AAAGEE+K  E  K EQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of Sed0005227 vs. ExPASy TrEMBL
Match: A0A1S3C2U1 (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 121/142 (85.21%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MATVVVS---EVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MAT+ VS      ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATRE 120
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A  E
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 120

Query: 121 --VADAAAGEEKKAEESKKVEQ 138
             VA AAAGEE+K  E  K EQ
Sbjct: 121 TVVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of Sed0005227 vs. ExPASy TrEMBL
Match: A0A0A0LG69 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.4e-48
Identity = 119/139 (85.61%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 2   ATVVVS---EVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61
           AT+ VS      ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62

Query: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATRE- 121
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A A  E 
Sbjct: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122

Query: 122 --VADAAAGEEKKAEESKK 135
                AAA EEKKAEESK+
Sbjct: 123 VVAVAAAAEEEKKAEESKE 141

[Close]

BLAST of Sed0005227 vs. ExPASy TrEMBL
Match: A0A6J1HLL6 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111465325 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.9e-48
Identity = 116/134 (86.57%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 3   TVVVSEVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           T+ VS   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 39  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 98

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADAA 122
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT A    E A A 
Sbjct: 99  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAE-ATAG 158

Query: 123 AGEEKK--AEESKK 135
            GEEKK   EESK+
Sbjct: 159 GGEEKKKAGEESKE 171

[Close]

BLAST of Sed0005227 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-44
Identity = 97/133 (72.93%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 2   ATVVVSEVAETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 61
           AT   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+E
Sbjct: 24  ATTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISE 83

Query: 62  ILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADA 121
           ILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+      +   + 
Sbjct: 84  ILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEE 143

Query: 122 AAGEEKKAEESKK 135
           A+ E + + E+++
Sbjct: 144 ASAETEASVEAQE 156

[Close]

BLAST of Sed0005227 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-38
Identity = 87/124 (70.16%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 11  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLAT 70
           +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A 
Sbjct: 16  DTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAV 75

Query: 71  EKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADAAAGEEKKAE 130
           EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM           AAA EEK+A 
Sbjct: 76  EKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM-----------AAANEEKEAA 128

Query: 131 ESKK 135
           E+++
Sbjct: 136 EAQE 128

[Close]

BLAST of Sed0005227 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.9e-38
Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 11  ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLAT 70
           ++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A 
Sbjct: 16  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAV 75

Query: 71  EKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTMAAATREVADAAA 124
           EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD L  MAAA  E  DA A
Sbjct: 76  EKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDEL--MAAANEEKEDAEA 126

The following BLAST results are available for this feature:

BLAST of Sed0005227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143158.1	4.0e-50	88.81	uncharacterized protein At2g34160 [Momordica charantia]	[more]
XP_038877259.1	2.6e-49	85.21	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
XP_008456222.1	7.5e-49	85.21	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba D...	[more]
KAG6586319.1	2.2e-48	87.31	hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004139384.1	4.9e-48	85.61	uncharacterized protein At2g34160 [Cucumis sativus]	[more]

BLAST of Sed0005227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	6.9e-37	75.22	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Sed0005227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ10	1.9e-50	88.81	uncharacterized protein At2g34160 OS=Momordica charantia OX=3673 GN=LOC111013094...	[more]
A0A5D3D4G4	3.6e-49	85.21	Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C2U1	3.6e-49	85.21	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]
A0A0A0LG69	2.4e-48	85.61	Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 S...	[more]
A0A6J1HLL6	6.9e-48	86.57	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114653...	[more]

BLAST of Sed0005227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04620.1	2.7e-44	72.93	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.3e-38	70.16	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	4.9e-38	75.22	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 14..132 e-value: 8.2E-53 score: 179.2
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 15..109
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 16..78 e-value: 2.7E-13 score: 49.5
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..133 e-value: 5.9E-62 score: 206.0
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 7..131
None	No IPR available	PANTHER	PTHR31947:SF19	ALBA DNA/RNA-BINDING PROTEIN	coord: 7..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005227.1	Sed0005227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048235	pollen sperm cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding