Moc07g11120 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g11120
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPhotosystem II CP47 reaction center protein-like
Locationchr7: 8542156 .. 8543286 (+)
RNA-Seq ExpressionMoc07g11120
SyntenyMoc07g11120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGTCAGCTGGGAAGATAAATTTGTCCACCTGTACTAATATATCTTCTATCTTTCTCTCTGGATGTGTGACGGACCTATCAGCCAACTACAGCGTTACTGTGGTGGGGCGTGCCTTCTCTATTCCTAACTTCTGCTACAAGGACAATGACATCCAATTTATGCTCGCGCCCAAGTCACATAGGGCATTTCCCACATGCTTGCCTCCTATCGACACAGGGATAGTGAAACTCCCTGGATCTCCCATTTTCTAAGGAAGTTTACCTGTTAAGATGGCACTGCATTCCTTTGTTAGAGCTACTGTTTCAAACTCCCCTAGCCTCATTTTCTTGGCTAGAATGTCCTTAGGAATTTAACATAATTGGGCATTTGTTCGAGTGCTTCTACTAAGGGTATGTTGATATGGAGTTGTTTAAGCACTTTTAAAAACCGATCACATTGCAGATCTTGAGTTTTCTTTTGGAGCTTCTGAGGGTATGGAGGTGATGGTCTGTATTCCACAGGTACTTTTACCTTTTTCGGCAACGGAGTTTCTATGGCTACCTCTTCTGCTGGCTCTACTTCTGCAACTCTCTTTCCCTTGTTTATCTCTAGCTCAGGTTGTCTTTCTACCTCTTGATGCACCGTCTGCTCTTGGTCTAACTCCTATTCCTGTGATGCTCTAGCACCGTCAGCGTTGTCTTCATCAATTGGCATATTCTCAGTAGCATCATCTTCTGTATTTTCTAACTATGGTTCCACAGGATGTTCTACTTTGTCTGCTTGCCATTGCACAGGATATGCTTTTCCACAACGCAGGGTCAAGGCTTGATACTGCTCTTTTCCTTCCCTTTTTGGATTTTCAGTATCACTCAGTAAGGTACCCTGAGGTCTCTTTTTTAGCTCGCTAGCCATTTGCCCCATTTGAACTTCTAAATTTCTTCGTGTTGCAGCTTGACTCTGAATCAGTGCATTGTTTCTGGCCATATATTTTCTCATCATGGCTGCCATTGAGTTGGAAGAAGTTGCTAATGGTCTTGTTCCTTGCTACTGACTGGGCATTAGCAATCCTAGTTGTTGGGCAACCTTTTGCTGATATTAGGAAGCATTCTTATGCATTTGGTTCCCTTGGTTTCCTCCCCAACTGA

mRNA sequence

ATGATGAAGTCAGCTGGGAAGATAAATTTGTCCACCTGTACTAATATATCTTCTATCTTTCTCTCTGGATGTGTGACGGACCTATCAGCCAACTACAGCGTTACTGTGGTGGGGCGTGCCTTCTCTATTCCTAACTTCTGCTACAAGGACAATGACATCCAATTTATGCTCGCGCCCAAGTCACATAGGGCATTTCCCACATGCTTGCCTCCTATCGACACAGGGATAGTACTTTTACCTTTTTCGGCAACGGAGTTTCTATGGCTACCTCTTCTGCTGGCTCTACTTCTGCAACTCTCTTTCCCTTGTTTATCTCTAGCTCAGGTTGTCTTTCTACCTCTTGATGCACCGTCTGCTCTTGGTCTAACTCCTATTCCTGATGTTCTACTTTGTCTGCTTGCCATTGCACAGGATATGCTTTTCCACAACGCAGGGTCAAGGCTTGATACTGCTCTTTTCCTTCCCTTTTTGGATTTTCAGTATCACTCACTTGACTCTGAATCAGTGCATTGTTTCTGGCCATATATTTTCTCATCATGGCTGCCATTGAGTTGGAAGAAGTTGCTAATGGTCTTGTTCCTTGCTACTGACTGGGCATTAGCAATCCTAGTTGTTGGGCAACCTTTTGCTGATATTAGGAAGCATTCTTATGCATTTGGTTCCCTTGGTTTCCTCCCCAACTGA

Coding sequence (CDS)

ATGATGAAGTCAGCTGGGAAGATAAATTTGTCCACCTGTACTAATATATCTTCTATCTTTCTCTCTGGATGTGTGACGGACCTATCAGCCAACTACAGCGTTACTGTGGTGGGGCGTGCCTTCTCTATTCCTAACTTCTGCTACAAGGACAATGACATCCAATTTATGCTCGCGCCCAAGTCACATAGGGCATTTCCCACATGCTTGCCTCCTATCGACACAGGGATAGTACTTTTACCTTTTTCGGCAACGGAGTTTCTATGGCTACCTCTTCTGCTGGCTCTACTTCTGCAACTCTCTTTCCCTTGTTTATCTCTAGCTCAGGTTGTCTTTCTACCTCTTGATGCACCGTCTGCTCTTGGTCTAACTCCTATTCCTGATGTTCTACTTTGTCTGCTTGCCATTGCACAGGATATGCTTTTCCACAACGCAGGGTCAAGGCTTGATACTGCTCTTTTCCTTCCCTTTTTGGATTTTCAGTATCACTCACTTGACTCTGAATCAGTGCATTGTTTCTGGCCATATATTTTCTCATCATGGCTGCCATTGAGTTGGAAGAAGTTGCTAATGGTCTTGTTCCTTGCTACTGACTGGGCATTAGCAATCCTAGTTGTTGGGCAACCTTTTGCTGATATTAGGAAGCATTCTTATGCATTTGGTTCCCTTGGTTTCCTCCCCAACTGA

Protein sequence

MMKSAGKINLSTCTNISSIFLSGCVTDLSANYSVTVVGRAFSIPNFCYKDNDIQFMLAPKSHRAFPTCLPPIDTGIVLLPFSATEFLWLPLLLALLLQLSFPCLSLAQVVFLPLDAPSALGLTPIPDVLLCLLAIAQDMLFHNAGSRLDTALFLPFLDFQYHSLDSESVHCFWPYIFSSWLPLSWKKLLMVLFLATDWALAILVVGQPFADIRKHSYAFGSLGFLPN
Homology
[Close]
BLAST of Moc07g11120 vs. NCBI nr
Match: KAA0056500.1 (photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa] >TYK29022.1 photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 8.4e-13
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 2  MKSAGKINLSTCTNISSIFLSGCVTDLSANYSVTVVGRAFSIPNFCYKDNDIQFMLAPKS 61
          MKSA  +NLST TN SSIF  GCV DLSAN S TVVG AF IP+F   D DI+ +LAP+ 
Sbjct: 1  MKSARNMNLSTLTNTSSIFPFGCVMDLSANCSATVVGFAFPIPDFLKIDGDIKLILAPRL 60

Query: 62 HRAFPTCLPPIDTGIVLLPFSATEFLWLP 91
          H A+P  +P I+  IV L  S+  F   P
Sbjct: 61 HSAWPRSIPSIEHRIVKLLSSSPFFFRRP 89

[Close]
BLAST of Moc07g11120 vs. ExPASy TrEMBL
Match: A0A5D3DZH8 (Photosystem II CP47 reaction center protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001330 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-13
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 2  MKSAGKINLSTCTNISSIFLSGCVTDLSANYSVTVVGRAFSIPNFCYKDNDIQFMLAPKS 61
          MKSA  +NLST TN SSIF  GCV DLSAN S TVVG AF IP+F   D DI+ +LAP+ 
Sbjct: 1  MKSARNMNLSTLTNTSSIFPFGCVMDLSANCSATVVGFAFPIPDFLKIDGDIKLILAPRL 60

Query: 62 HRAFPTCLPPIDTGIVLLPFSATEFLWLP 91
          H A+P  +P I+  IV L  S+  F   P
Sbjct: 61 HSAWPRSIPSIEHRIVKLLSSSPFFFRRP 89

The following BLAST results are available for this feature:
BLAST of Moc07g11120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056500.18.4e-1355.06photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Moc07g11120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g11120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DZH84.1e-1355.06Photosystem II CP47 reaction center protein-like OS=Cucumis melo var. makuwa OX=... [more]
BLAST of Moc07g11120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..24
score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g11120.1Moc07g11120.1mRNA