Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATGAGAGTATCTCCAATGTGAGGGGAATTGGAGATGTTTGTTTGAAGACAGGCAAAGGGGTCAAGTTTGGCCTACGAGACGACAGGTATATTCCTAGCTTCATATATAATTTGTTATCTGTAGGGAAACTAGATGACGATGGTTACAGTAGTGACTTTAGTGGGGGTTGCTGGAAGCTCAAGAGGGAATCCAGTGTGGTGGCAACATGCCACAAGATATCTTCTGTTTATGTGTCCGAGTTTGAGGTTGCCAGGGGATCTGAAAGACAGAGGATGCATAGTCTAGCTGCAAATGGTTCAAGGCGAGACTTAAAAGAATCAGCAGCATTGACAACCAAGACAGATCAGAAGAATCTGCCATCAACTTAA
mRNA sequence
ATGGGAAATGAGAGTATCTCCAATGTGAGGGGAATTGGAGATGTTTGTTTGAAGACAGGCAAAGGGGTCAAGTTTGGCCTACGAGACGACAGGTATATTCCTAGCTTCATATATAATTTGTTATCTGTAGGGAAACTAGATGACGATGGTTACAGTAGTGACTTTAGTGGGGGTTGCTGGAAGCTCAAGAGGGAATCCAGTGTGGTGGCAACATGCCACAAGATATCTTCTGTTTATGTGTCCGAGTTTGAGGTTGCCAGGGGATCTGAAAGACAGAGGATGCATAGTCTAGCTGCAAATGGTTCAAGGCGAGACTTAAAAGAATCAGCAGCATTGACAACCAAGACAGATCAGAAGAATCTGCCATCAACTTAA
Coding sequence (CDS)
ATGGGAAATGAGAGTATCTCCAATGTGAGGGGAATTGGAGATGTTTGTTTGAAGACAGGCAAAGGGGTCAAGTTTGGCCTACGAGACGACAGGTATATTCCTAGCTTCATATATAATTTGTTATCTGTAGGGAAACTAGATGACGATGGTTACAGTAGTGACTTTAGTGGGGGTTGCTGGAAGCTCAAGAGGGAATCCAGTGTGGTGGCAACATGCCACAAGATATCTTCTGTTTATGTGTCCGAGTTTGAGGTTGCCAGGGGATCTGAAAGACAGAGGATGCATAGTCTAGCTGCAAATGGTTCAAGGCGAGACTTAAAAGAATCAGCAGCATTGACAACCAAGACAGATCAGAAGAATCTGCCATCAACTTAA
Protein sequence
MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCWKLKRESSVVATCHKISSVYVSEFEVARGSERQRMHSLAANGSRRDLKESAALTTKTDQKNLPST
Homology
BLAST of Moc05g12190 vs. NCBI nr
Match:
RVW91307.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 94.7 bits (234), Expect = 5.8e-16
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE++S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 294 MGNENVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 353
Query: 61 KLKRESSVVATCHKISSVYVSEFEVARG 89
KL + S VVA +K S+Y + ++ +G
Sbjct: 354 KLSKGSLVVAKGNKTCSLYTVQAKICKG 381
BLAST of Moc05g12190 vs. NCBI nr
Match:
KAF7129225.1 (hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii])
HSP 1 Score: 91.7 bits (226), Expect = 4.9e-15
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GDVCL+T G K L+D R++P+ NL+S GKLDD+GY + F G W
Sbjct: 330 MGNEGVSKIVGMGDVCLETNTGCKLLLKDVRHVPNIRLNLISAGKLDDEGYKNQFGDGKW 389
Query: 61 KLKRESSVVATCHKISSVYVSEFEVARG 89
KL + S VVA K S++Y+ + ++++G
Sbjct: 390 KLSKGSLVVARGKKSSTLYLMQAKLSKG 417
BLAST of Moc05g12190 vs. NCBI nr
Match:
KAF7129546.1 (hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii])
HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GDVCL+T G K L+D R++P NL+S GKLDD+GY + F G W
Sbjct: 330 MGNEGVSKIVGMGDVCLETNTGCKLLLKDVRHVPDIRLNLISAGKLDDEGYKNQFGDGKW 389
Query: 61 KLKRESSVVATCHKISSVYVSEFEVARG 89
KL + S +VA K S++Y+ + ++++G
Sbjct: 390 KLSKGSLIVARGKKSSTLYLMQVKLSKG 417
BLAST of Moc05g12190 vs. NCBI nr
Match:
RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 301 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 360
Query: 61 KLKRESSVVATCHKISSVYVSEFEVAR 88
KL + S VVA K S+Y + ++ +
Sbjct: 361 KLSKGSLVVAKGKKTCSLYTVQAKICK 387
BLAST of Moc05g12190 vs. NCBI nr
Match:
RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 537 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 596
Query: 61 KLKRESSVVATCHKISSVYVSEFEVAR 88
KL + S VVA K S+Y + ++ +
Sbjct: 597 KLSKGSLVVAKGKKTCSLYTVQAKICK 623
BLAST of Moc05g12190 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGN S S + GIGD+C+KT G L+D R++P NL+S LD DGY S F+ W
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383
Query: 61 KLKRESSVVATCHKISSVYVSEFEVARG 89
+L + S V+A ++Y + E+ +G
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQG 411
BLAST of Moc05g12190 vs. ExPASy TrEMBL
Match:
A0A438I3N7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1722 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE++S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 294 MGNENVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 353
Query: 61 KLKRESSVVATCHKISSVYVSEFEVARG 89
KL + S VVA +K S+Y + ++ +G
Sbjct: 354 KLSKGSLVVAKGNKTCSLYTVQAKICKG 381
BLAST of Moc05g12190 vs. ExPASy TrEMBL
Match:
A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 537 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 596
Query: 61 KLKRESSVVATCHKISSVYVSEFEVAR 88
KL + S VVA K S+Y + ++ +
Sbjct: 597 KLSKGSLVVAKGKKTCSLYTVQAKICK 623
BLAST of Moc05g12190 vs. ExPASy TrEMBL
Match:
A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 301 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISTGKLDDEGYNNNFSDGKW 360
Query: 61 KLKRESSVVATCHKISSVYVSEFEVAR 88
KL + S VVA K S+Y + ++ +
Sbjct: 361 KLSKGSLVVAKGKKTCSLYTVQAKICK 387
BLAST of Moc05g12190 vs. ExPASy TrEMBL
Match:
A0A438IBT7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_788 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 271 MGNEDVSKIFGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 330
Query: 61 KLKRESSVVATCHKISSVYVSEFEVAR 88
KL + S VVA K S+Y + ++ +
Sbjct: 331 KLSKGSLVVAKGKKTCSLYTVQAKICK 357
BLAST of Moc05g12190 vs. ExPASy TrEMBL
Match:
A0A438E432 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_810 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MGNESISNVRGIGDVCLKTGKGVKFGLRDDRYIPSFIYNLLSVGKLDDDGYSSDFSGGCW 60
MGNE +S + G+GD+CL+T G K LRD R++P NL+S GKLDD+GY+++FS G W
Sbjct: 190 MGNEDVSKIVGMGDICLETNTGCKLLLRDVRHVPDIRLNLISAGKLDDEGYNNNFSDGKW 249
Query: 61 KLKRESSVVATCHKISSVYVSEFEVAR 88
KL + S VVA K S+Y + ++ +
Sbjct: 250 KLSKGSLVVAKGKKTCSLYTVQAKICK 276
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW91307.1 | 5.8e-16 | 47.73 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
KAF7129225.1 | 4.9e-15 | 46.59 | hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii] | [more] |
KAF7129546.1 | 6.4e-15 | 45.45 | hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii] | [more] |
RVW84195.1 | 6.4e-15 | 47.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW14266.1 | 6.4e-15 | 47.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 1.2e-11 | 39.77 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A438I3N7 | 2.8e-16 | 47.73 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438BTH6 | 3.1e-15 | 47.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438HI91 | 3.1e-15 | 47.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438IBT7 | 3.1e-15 | 47.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438E432 | 3.1e-15 | 47.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
Match Name | E-value | Identity | Description | |