Lag0001146 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001146
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description1-deoxy-D-xylulose 5-phosphate synthase family protein
Locationchr4: 25347084 .. 25347488 (-)
RNA-Seq ExpressionLag0001146
SyntenyLag0001146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCACCCATGACAGCACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAATATAATGCAGGGGTTGGAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCCTGTGGAAGAAAGCGAGCGGGGAAGCTATTCTTTGGGTCTCTCATAACTCAACTTTATCAGATAGTCAAGATTGTTCCTAGAAAGAATGAGGAACGACATTTTTACAAGCCTACCATTGACTTTCCTCTGATAGGGAAGCTGCAGCAGAACAATGCACAAAGAAAAGATAAAGCTTCTGCCTCTCAAGCTACTCCTTCTCTGGGGCTGACACCTACTTCACCTCCAACACATAGTCCTATTTCAGGGCCTACACCATCAATCAAGGTCCTTGCATTTGCTTTTGCCAGCTAG

mRNA sequence

ATGCCCACCACCCATGACAGCACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAATATAATGCAGGGGTTGGAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCCTGTGGAAGAAAGCGAGCGGGGAAGCTATTCTTTGGGTCTCTCATAACTCAACTTTATCAGATAGTCAAGATTGTTCCTAGAAAGAATGAGGAACGACATTTTTACAAGCCTACCATTGACTTTCCTCTGATAGGGAAGCTGCAGCAGAACAATGCACAAAGAAAAGATAAAGCTTCTGCCTCTCAAGCTACTCCTTCTCTGGGGCTGACACCTACTTCACCTCCAACACATAGTCCTATTTCAGGGCCTACACCATCAATCAAGGTCCTTGCATTTGCTTTTGCCAGCTAG

Coding sequence (CDS)

ATGCCCACCACCCATGACAGCACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAATATAATGCAGGGGTTGGAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCCTGTGGAAGAAAGCGAGCGGGGAAGCTATTCTTTGGGTCTCTCATAACTCAACTTTATCAGATAGTCAAGATTGTTCCTAGAAAGAATGAGGAACGACATTTTTACAAGCCTACCATTGACTTTCCTCTGATAGGGAAGCTGCAGCAGAACAATGCACAAAGAAAAGATAAAGCTTCTGCCTCTCAAGCTACTCCTTCTCTGGGGCTGACACCTACTTCACCTCCAACACATAGTCCTATTTCAGGGCCTACACCATCAATCAAGGTCCTTGCATTTGCTTTTGCCAGCTAG

Protein sequence

MPTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIVKIVPRKNEERHFYKPTIDFPLIGKLQQNNAQRKDKASASQATPSLGLTPTSPPTHSPISGPTPSIKVLAFAFAS
Homology
BLAST of Lag0001146 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 0

Query: 2   PTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIV- 61
           PTTHDS+ISVE+++LLY ++ G  IN+G ++ + IL C ++R GKLFF SLI +L     
Sbjct: 350 PTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG 409

Query: 62  ------KIVPRKNEERHFYKPTIDFPLIGKLQQNNAQRKDKASASQATPSL 106
                  +V ++ EE    K TID   + KL++ + + ++    ++A   L
Sbjct: 410 VPEYTDDLVIKECEE----KWTIDMKAVSKLRERSERGRELPGVTRAMEEL 456

BLAST of Lag0001146 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-09
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 1   MPTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIV 60
           +PTTH  T+S +R++LLY+++ G  IN+G +I  EI +C  +++G LFF SLITQL +  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPRKNEERHFYKPTIDFPLIGKL---------QQNNAQRKDKASASQA 102
           +     NEE+      ID   + ++         QQ +  R   AS+S+A
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRA 166

BLAST of Lag0001146 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-08
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 1   MPTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIV 60
           +PTTH  T+S ERV+LLY+++ G  IN+G II  EI +   +++G LFF SLIT++    
Sbjct: 93  LPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMCCNA 152

Query: 61  KIVPRKNEERHFYKPTIDFPLIGKL-QQNNAQRKDKASASQ 101
           +     NEE+      ID   + ++ Q+  A+   + S+S+
Sbjct: 153 RAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEHSHRPSSSR 193

BLAST of Lag0001146 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-08
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 0

Query: 1   MPTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIV 60
           +PTTH   +S E V+LLY+++ G  IN+G II  EI +C  ++ G LFF SLIT++ +  
Sbjct: 24  LPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNA 83

Query: 61  KIVPRKNEERHFYKPTIDFPLIGKL-QQNNAQRKDKASASQATPSLGLTPTS 112
           +     NEE+      ID   + ++ Q+  A+   ++S+S+ + +   + TS
Sbjct: 84  RAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEPSHRSSSSRPSVASSSSTTS 135

BLAST of Lag0001146 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 67.8 bits (164), Expect = 8.2e-08
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 1   MPTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIV 60
           +PT+HDST+S ER+ +LY I++G +IN+G +I +EI  C  +  GKLFF  LIT+  +  
Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61  KIVPRKNEE 70
             VP  N+E
Sbjct: 946 N-VPMLNDE 953

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024971944.12.0e-0936.94uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
PON59596.15.7e-0936.36hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON62892.16.3e-0836.63hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
PON65869.18.2e-0833.93hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
KAF4375842.18.2e-0846.38hypothetical protein G4B88_026421 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001146.1Lag0001146.1mRNA