Lag0001146.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCACCACCCATGACAGCACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAATATAATGCAGGGGTTGGAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCCTGTGGAAGAAAGCGAGCGGGGAAGCTATTCTTTGGGTCTCTCATAACTCAACTTTATCAGATAGTCAAGATTGTTCCTAGAAAGAATGAGGAACGACATTTTTACAAGCCTACCATTGACTTTCCTCTGATAGGGAAGCTGCAGCAGAACAATGCACAAAGAAAAGATAAAGCTTCTGCCTCTCAAGCTACTCCTTCTCTGGGGCTGACACCTACTTCACCTCCAACACATAGTCCTATTTCAGGGCCTACACCATCAATCAAGGTCCTTGCATTTGCTTTTGCCAGCTAG ATGCCCACCACCCATGACAGCACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAATATAATGCAGGGGTTGGAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCCTGTGGAAGAAAGCGAGCGGGGAAGCTATTCTTTGGGTCTCTCATAACTCAACTTTATCAGATAGTCAAGATTGTTCCTAGAAAGAATGAGGAACGACATTTTTACAAGCCTACCATTGACTTTCCTCTGATAGGGAAGCTGCAGCAGAACAATGCACAAAGAAAAGATAAAGCTTCTGCCTCTCAAGCTACTCCTTCTCTGGGGCTGACACCTACTTCACCTCCAACACATAGTCCTATTTCAGGGCCTACACCATCAATCAAGGTCCTTGCATTTGCTTTTGCCAGCTAG ATGCCCACCACCCATGACAGCACGATTTCAGTAGAGAGGGTCATGCTTCTCTACAATATAATGCAGGGGTTGGAAATTAATATTGGGAGCATCATTAGAGAGGAGATTCTGTCCTGTGGAAGAAAGCGAGCGGGGAAGCTATTCTTTGGGTCTCTCATAACTCAACTTTATCAGATAGTCAAGATTGTTCCTAGAAAGAATGAGGAACGACATTTTTACAAGCCTACCATTGACTTTCCTCTGATAGGGAAGCTGCAGCAGAACAATGCACAAAGAAAAGATAAAGCTTCTGCCTCTCAAGCTACTCCTTCTCTGGGGCTGACACCTACTTCACCTCCAACACATAGTCCTATTTCAGGGCCTACACCATCAATCAAGGTCCTTGCATTTGCTTTTGCCAGCTAG MPTTHDSTISVERVMLLYNIMQGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLYQIVKIVPRKNEERHFYKPTIDFPLIGKLQQNNAQRKDKASASQATPSLGLTPTSPPTHSPISGPTPSIKVLAFAFAS Homology
BLAST of Lag0001146.1 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]) HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09 Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 0
BLAST of Lag0001146.1 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii]) HSP 1 Score: 71.6 bits (174), Expect = 5.7e-09 Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 0
BLAST of Lag0001146.1 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii]) HSP 1 Score: 68.2 bits (165), Expect = 6.3e-08 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of Lag0001146.1 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii]) HSP 1 Score: 67.8 bits (164), Expect = 8.2e-08 Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 0
BLAST of Lag0001146.1 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa]) HSP 1 Score: 67.8 bits (164), Expect = 8.2e-08 Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|