Lag0000193 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000193
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCACTA en-spm transposon protein
Locationchr4: 1332693 .. 1333198 (+)
RNA-Seq ExpressionLag0000193
SyntenyLag0000193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGATTCTTCAACAATGAATAAGGAGTGGATTAAAATTCGAGATAAACTTTCAACGGAGTATAAGGTTGGGGTTGCTCAGTTCCTAGAGGTGGCAAAGCTACACGTTACGATCTAGGAAAAACACGGTGCCCATGTAAGAAATGTATGAATGCAATATGGCAGTCATTAGACGGGGTGGAACGACATCTACTCACATTTGGAATATCTCCCTCTTATAGTCAATGGGTGTATCATGGTGAACCAATCGACTTATCTAGAGGATTTGACGTTCAGAGAACTACTCCAATACGAACTGATCAGAATAGGAGTACTGCTGAGCCAAGTGGTGTAAGCGAGGAAGCCGACATGTTCGACCTCTTAGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCTCCAGTTCAGAACAAGAAGCCTGA

mRNA sequence

ATGGATGTAGATTCTTCAACAATGAATAAGGAGTGGATTAAAATTCGAGATAAACTTTCAACGGAGTATAAGGTTGGGGTTGCTCAGTTCCTAGAGTCATTAGACGGGGTGGAACGACATCTACTCACATTTGGAATATCTCCCTCTTATAGTCAATGGGTGTATCATGGTGAACCAATCGACTTATCTAGAGGATTTGACGTTCAGAGAACTACTCCAATACGAACTGATCAGAATAGGAGTACTGCTGAGCCAAGTGGTGTAAGCGAGGAAGCCGACATGTTCGACCTCTTAGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCTCCAGTTCAGAACAAGAAGCCTGA

Coding sequence (CDS)

ATGGATGTAGATTCTTCAACAATGAATAAGGAGTGGATTAAAATTCGAGATAAACTTTCAACGGAGTATAAGGTTGGGGTTGCTCAGTTCCTAGAGTCATTAGACGGGGTGGAACGACATCTACTCACATTTGGAATATCTCCCTCTTATAGTCAATGGGTGTATCATGGTGAACCAATCGACTTATCTAGAGGATTTGACGTTCAGAGAACTACTCCAATACGAACTGATCAGAATAGGAGTACTGCTGAGCCAAGTGGTGTAAGCGAGGAAGCCGACATGTTCGACCTCTTAGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACCTCCAGTTCAGAACAAGAAGCCTGA

Protein sequence

MDVDSSTMNKEWIKIRDKLSTEYKVGVAQFLESLDGVERHLLTFGISPSYSQWVYHGEPIDLSRGFDVQRTTPIRTDQNRSTAEPSGVSEEADMFDLLDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSSSEQEA
Homology
BLAST of Lag0000193 vs. NCBI nr
Match: KAA0050152.1 (uncharacterized protein E6C27_scaffold675G001830 [Cucumis melo var. makuwa] >TYK06408.1 uncharacterized protein E5676_scaffold163G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-15
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 5   SSTMNKEWIKIRDKLSTEYKVGVAQFL-------------------------ESLDGVER 64
           S TMNK+WIK+++KLS EY+ GV+QFL                         ESL+GVER
Sbjct: 224 SLTMNKDWIKLQNKLSVEYREGVSQFLEVAKLHVNDSGRTRCPCKKCMNSMWESLEGVER 283

Query: 65  HLLTFGISPSYSQWVYHGEPIDLSRGFDVQRTTPIRTDQNRSTAEPSGVSEEADMFDLLD 101
           HLLT GISPSY  W+YHGE ++L RG +      + T  +      S + E+ +M DLL+
Sbjct: 284 HLLTVGISPSYVNWIYHGERVNLPRGLE-----RVATHLHHDDEGTSNLFEQNEMLDLLN 339

BLAST of Lag0000193 vs. NCBI nr
Match: KAA0040340.1 (hypothetical protein E6C27_scaffold460G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 8   MNKEWIKIRDKLSTEYKVGVAQFLE-------------------------SLDGVERHLL 67
           M+K+W+K+R+K S EY+ GV QFLE                         SL+GVERHLL
Sbjct: 1   MDKDWMKLRNKFSLEYRHGVTQFLEFAKFYVDAYGRLRCPCKRCLNLNWSSLEGVERHLL 60

Query: 68  TFGISPSYSQWVYHGEPIDLSRGFDVQRTTPIRTDQNRSTAEPSGVSEEADMFDLLDD 101
           T GISP Y++WVYHGE +  +   + ++ T      N  T+     +EE D+F +L+D
Sbjct: 61  TIGISPYYTEWVYHGESLSFTGTENFEKGTTSSNPFNEGTSRRQ-FNEEGDIFGMLND 117

BLAST of Lag0000193 vs. NCBI nr
Match: TYK23363.1 (hypothetical protein E5676_scaffold142G004270 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 8   MNKEWIKIRDKLSTEYKVGVAQFLE-------------------------SLDGVERHLL 67
           M+K+W+K+R+K S EY+ GV QFLE                         SL+GVERHLL
Sbjct: 1   MDKDWMKLRNKFSLEYRHGVTQFLEFVKFYVDAYGRLRCPCKRCLNLNWSSLEGVERHLL 60

Query: 68  TFGISPSYSQWVYHGEPIDLSRGFDVQRTTPIRTDQNRSTAEPSGVSEEADMFDLLDD 101
           T GISP Y++WVYHGE +  +   + ++ T      N  T+     +EE D+F +L+D
Sbjct: 61  TIGISPYYTEWVYHGESLSFTGTENFEKGTTSSNPFNEGTSRRQ-FNEEGDIFGMLND 117

BLAST of Lag0000193 vs. NCBI nr
Match: TYK28867.1 (uncharacterized protein E5676_scaffold381G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 46/120 (38.33%), Postives = 65/120 (54.17%), Query Frame = 0

Query: 8   MNKEWIKIRDKLSTEYKVGVAQFLE-------------------------SLDGVERHLL 67
           M+K W+K+R+KLS EY+ GV QFLE                         SL+GVERHLL
Sbjct: 130 MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLL 189

Query: 68  TFGISPSYSQWVYHGEPIDL--SRGFDVQRTTPIRTDQNRSTAEPSGVSEEADMFDLLDD 101
           T GISP Y++WVYHGE +    +  F+   ++ +  +   ST      +EE D+F +L+D
Sbjct: 190 TIGISPYYTEWVYHGESLSYRGTENFEEGTSSNLFNEGTSSTQ----FNEEGDIFGMLND 245

BLAST of Lag0000193 vs. NCBI nr
Match: TYJ95864.1 (uncharacterized protein E5676_scaffold110G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 0

Query: 8   MNKEWIKIRDKLSTEYKVGVAQFLE-------------------------SLDGVERHLL 67
           M+K W+K+R+KLS EY+ GV QFLE                         SL+GVERHLL
Sbjct: 52  MDKGWMKLRNKLSLEYRHGVTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLL 111

Query: 68  TFGISPSYSQWVYHGEPIDLSRGFDVQRTTPIRTDQNRSTAEPSGVSEEADMFDLLDD 101
           T GISP Y++WVYHGE +   RG +           N  T+  +  +EE D+F +L+D
Sbjct: 112 TIGISPYYTEWVYHGESLSY-RGTENFEEGTSSNPFNEGTSS-TQFNEEGDIFGMLND 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050152.13.3e-1542.15uncharacterized protein E6C27_scaffold675G001830 [Cucumis melo var. makuwa] >TYK... [more]
KAA0040340.13.4e-1238.14hypothetical protein E6C27_scaffold460G00450 [Cucumis melo var. makuwa][more]
TYK23363.13.4e-1238.14hypothetical protein E5676_scaffold142G004270 [Cucumis melo var. makuwa][more]
TYK28867.15.0e-1138.33uncharacterized protein E5676_scaffold381G00070 [Cucumis melo var. makuwa][more]
TYJ95864.16.5e-1139.83uncharacterized protein E5676_scaffold110G001580 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000193.1Lag0000193.1mRNA